Gene/Protein Characteristic Table for KIAA0407
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Product ID ORK01666
Accession No AB007867
Description plexin B1, transcript variant 1
Clone name hg01339
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (7308 bp)
Predicted protein sequence (2143 aa)
Flexi ORF Clone FXC01666
Source Human adult brain
Rouge ID mKIAA0407 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 7308 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Features of the protein sequence
Description

Length: 2143 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
O43157 0 100.0 Plexin-B1; Sema...
Homo sapiens
CAB57277 0 99.9 semaphorin rece...
Homo sapiens
XP_001098365 0 94.9 similar to plex...
Macaca mulatta
XP_001916405 0 92.2 plexin B1 [Equu...
Equus caballus
XP_533841 0 91.1 similar to plex...
Canis lupus fam...
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB033032 6.4e-63 46.9 KIAA1206
AB002313 1.8e-32 39.3 KIAA0315
AB014520 5.7e-21 32.9 KIAA0620
AB007932 1.1e-15 32.3 KIAA0463
AB046770 1.6e-15 32.7 KIAA1550
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001627 43 470 PF01403 Semaphorin/CD100 antigen
IPR002165 489 542 PF01437 Plexin
IPR002165 1029 1076 PF01437 Plexin
IPR002909 1078 1167 PF01833 Cell surface receptor IPT/TIG
IPR002909 1170 1256 PF01833 Cell surface receptor IPT/TIG
IPR002909 1260 1382 PF01833 Cell surface receptor IPT/TIG
IPR013548 1569 2110 PF08337 Plexin cytoplasmic region
HMMSmart IPR001627 43 471 SM00630 Semaphorin/CD100 antigen
IPR003659 489 542 SM00423 Plexin/semaphorin/integrin
IPR003659 636 686 SM00423 Plexin/semaphorin/integrin
IPR003659 1029 1076 SM00423 Plexin/semaphorin/integrin
IPR002909 1077 1168 SM00429 Cell surface receptor IPT/TIG
IPR002909 1169 1257 SM00429 Cell surface receptor IPT/TIG
IPR002909 1259 1383 SM00429 Cell surface receptor IPT/TIG
ProfileScan IPR001627 17 487 PS51004 Semaphorin/CD100 antigen
ScanRegExp IPR003006 1028 1034 PS00290 Immunoglobulin/major histocompatibility complex motif
IPR002345 1829 1841 PS00213 Lipocalin

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 7 VTMPALGPALLQALWAGWVLTLQ 29 SECONDARY 23
2 1494 PVAAQVGLGVGTSLLALGVIIIV 1516 PRIMARY 23
Expression profile
Description

RT-PCR
Experimental conditions
Primer_f AAAAGCTGGGTCAATGGAGTC
Primer_r TTGCTGCTGCCACATCCTAGG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 3
Experimental conditions
Panel name GeneBridge 4
Primer_f AAAAGCTGGGTCAATGGAGTC
Primer_r TTGCTGCTGCCACATCCTAGG
PCR product length 176 bp
PCR conditions 95 °C15 sec66 °C60 sec30 cycles
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