hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02084694/chunk_1/iprscan-20080502-02084694.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0407 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08337.2.ls Plexin cytoplasmic region 1348.4 0 1 PF08337.2.fs Plexin cytoplasmic region 1346.6 0 1 PF01833.14.ls IPT/TIG domain 262.0 1.1e-75 3 PF01833.14.fs IPT/TIG domain 256.6 4.7e-74 3 PF01437.15.fs Plexin repeat 121.6 3.3e-39 3 PF01437.15.ls Plexin repeat 122.7 9.5e-34 3 PF01403.10.fs Sema domain 47.6 3.7e-13 2 PF01403.10.ls Sema domain -1.4 1.6e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01403.10.fs 1/2 43 177 .. 1 150 [. 33.1 3.8e-09 PF01403.10.ls 1/1 43 470 .. 1 490 [] -1.4 1.6e-10 PF01437.15.ls 1/3 489 542 .. 1 63 [] 75.9 1.2e-19 PF01437.15.fs 1/3 489 542 .. 1 63 [] 74.0 1.2e-23 PF01437.15.fs 3/3 1029 1076 .. 1 63 [] 40.2 1.5e-12 PF01437.15.ls 3/3 1029 1076 .. 1 63 [] 41.9 2.1e-09 PF01833.14.ls 1/3 1078 1167 .. 1 104 [] 88.5 1.9e-23 PF01833.14.fs 1/3 1078 1167 .. 1 104 [] 86.7 2.2e-24 PF01833.14.ls 2/3 1170 1256 .. 1 104 [] 79.6 9.2e-21 PF01833.14.fs 2/3 1170 1256 .. 1 104 [] 77.8 8.3e-22 PF01833.14.ls 3/3 1260 1382 .. 1 104 [] 93.9 4.3e-25 PF01833.14.fs 3/3 1260 1382 .. 1 104 [] 92.1 6.1e-26 PF08337.2.fs 1/1 1569 2110 .. 1 586 [] 1346.6 0 PF08337.2.ls 1/1 1569 2110 .. 1 586 [] 1348.4 0 Alignments of top-scoring domains: PF01403.10.fs: domain 1 of 2, from 43 to 177: score 33.1, E = 3.8e-09 *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpsspgeek +++l d+ +g+Ly GA+N ++ L+ + l++ ++ +++ + KIAA0407 43 LQHLARDPTSGTLYLGATNFLFQLS-PGLQL---EATVSTGP--VLD 83 ceeCkmkGkspgc..VeteCqNfirVLqpyndthLyvCGTnaFqPvCtli ++C ++ c++ ++ ++ ++L+++++ L+vCG++ q+vC + KIAA0407 84 SRDCLPPVMPDECpqAQPTNNPNQLLLVSPGA--LVVCGSVH-QGVCEQR 130 nlgdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrtg +lg + + l++e+ ++ ++ + dP+ +++++++qg +g KIAA0407 131 RLGQLEQ----------LLLRPERPGDTQYVAANDPAVSTVGLVAQGLAG 170 e..LYsG<-* e+ L++G KIAA0407 171 EplLFVG 177 PF01403.10.ls: domain 1 of 1, from 43 to 470: score -1.4, E = 1.6e-10 *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpsspgeek +++l d+ +g+Ly GA+N ++ L+ + l++ ++ +++ + KIAA0407 43 LQHLARDPTSGTLYLGATNFLFQLS-PGLQL---EATVSTGP--VLD 83 ceeCkmkGkspgc..VeteCqNfirVLqpyndthLyvCGTnaFqPvCtli ++C ++ c++ ++ ++ ++L+++++ L+vCG++ q+vC + KIAA0407 84 SRDCLPPVMPDECpqAQPTNNPNQLLLVSPGA--LVVCGSVH-QGVCEQR 130 nlgdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrtg +lg + + l++e+ ++ ++ + dP+ +++++++qg +g KIAA0407 131 RLGQLEQ----------LLLRPERPGDTQYVAANDPAVSTVGLVAQGLAG 170 e..LYsGtvaDss.........vaasFsGrdpaIrRslgshdplrTeqhd e+ L++G + s + +++ ++ ++ dp +s ++ + l + + KIAA0407 171 EplLFVGRGYTSRgvgggippiTTRALWPPDPQAAFSYEETAKLAVGRLS 220 skwlnePnFVdsypipyvhsfdDdkVYFFFrEtaveyspncgkaiysRVa ++ + +FV++++ + YF+F + + ++ +a+ ++V KIAA0407 221 EYSH---HFVSAFARG-------ASAYFLFLRRDLQA--QS-RAFRAYVS 257 RvCknDvGGrrylelnkWTTFLKARLnCSvpGeegipkfyFNeLQavfll RvC D+ +y+el+ L C eg + + +Qa+ ++ KIAA0407 258 RVCLRDQHYYSYVELP---------LAC-----EGGR---YGLIQAAAVA 290 ptganlAreLgIserdpviYGVFttssnsiagpgdn........SAVCaF +++ A + +v+++ F++ ++ g++++ + ++ SA+CaF KIAA0407 291 TSREV-A-------HGEVLFAAFSSAAPPTVGRPPSaaagasgaSALCAF 332 smsdIrqvFenGpfkhqssEgpnskwlpyrglkvPyPRPGqCpndssgpn ++ +++ + ++++ +Eg + + + C++ + + KIAA0407 333 PLDEVDRLANRTRDACYTREGRAEDGTEVAY-IEYDVN-SDCAQLPVD-- 378 ytStkdlPDdtlnfikshpLmdevvpPlhnrPlfvgtsvnyrlTqIaVdk l+ + + m Pl+ P++ ++ +lT++aV+ KIAA0407 379 -----TLDAYPCGSDHTPSPMAS-RVPLEATPILEWPGI--QLTAVAVT- 419 rVragdGqlYtVlFlGTddGtvlKkvvvlsrsss.syeevvleelqvfkd +dG +t++FlG ++G ++ +v+l ++s ++++ +q ++ KIAA0407 420 ---MEDG--HTIAFLGDSQGQLH--RVYLGPGSDgHPY-----STQSIQQ 457 priePvqnleisskq<-* + ++v++++++ + KIAA0407 458 G--SAVSRDLTFDGT 470 PF01437.15.ls: domain 1 of 3, from 489 to 542: score 75.9, E = 1.2e-19 *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfygeCprse. +C+q+ +C+sCLa+rdp yCgWC+++grC+r+s eC+r+++ KIAA0407 489 SCAQHLDCASCLAHRDP-YCGWCVLLGRCSRRS-------ECSRGQg 527 pendqwldwswssskCp<-* pe qwl++ + + +C KIAA0407 528 PE--QWLWSFQPELGCL 542 PF01437.15.fs: domain 1 of 3, from 489 to 542: score 74.0, E = 1.2e-23 *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfygeCprse. +C+q+ +C+sCLa+rdp yCgWC+++grC+r+s eC+r+++ KIAA0407 489 SCAQHLDCASCLAHRDP-YCGWCVLLGRCSRRS-------ECSRGQg 527 pendqwldwswssskCp<-* pe qwl++ + + +C KIAA0407 528 PE--QWLWSFQPELGCL 542 PF01437.15.fs: domain 3 of 3, from 1029 to 1076: score 40.2, E = 1.5e-12 *->nCsqy.tsCssCLaardpfyCgWCss.egrCtrgsaytsfygeCprs +Cs+ +++Cs+C a++ ++C WC++++ rC++++ C ++ KIAA0407 1029 DCSVGhGDCSRCQTAMPQYGCVWCEGeRPRCVTRE-------ACGEA 1068 ependqwldwswssskCp<-* e + +Cp KIAA0407 1069 E----------AVATQCP 1076 PF01437.15.ls: domain 3 of 3, from 1029 to 1076: score 41.9, E = 2.1e-09 *->nCsqy.tsCssCLaardpfyCgWCss.egrCtrgsaytsfygeCprs +Cs+ +++Cs+C a++ ++C WC++++ rC++++ C ++ KIAA0407 1029 DCSVGhGDCSRCQTAMPQYGCVWCEGeRPRCVTRE-------ACGEA 1068 ependqwldwswssskCp<-* e + +Cp KIAA0407 1069 E----------AVATQCP 1076 PF01833.14.ls: domain 1 of 3, from 1078 to 1167: score 88.5, E = 1.9e-23 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt P I+s++P++gp++GGt++Ti+Gsnlg ++++d ++Vt KIAA0407 1078 PLIHSVEPLTGPVDGGTRVTIRGSNLG---------QHVQDVLGMVT 1115 fggtpvpCdvisssss..tqivCktPpva.ggpsppvvtvsvdgggsgdg ++g+p C v+ ++++ ++++vC t+++ ++ + v+v g g KIAA0407 1116 VAGVP--CAVDAQEYEvsSSLVCITGASGeEVAGA--TAVEVPGRG---- 1157 rssspvtFtY<-* r+ s+ +F Y KIAA0407 1158 RGVSEHDFAY 1167 PF01833.14.fs: domain 1 of 3, from 1078 to 1167: score 86.7, E = 2.2e-24 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt P I+s++P++gp++GGt++Ti+Gsnlg ++++d ++Vt KIAA0407 1078 PLIHSVEPLTGPVDGGTRVTIRGSNLG---------QHVQDVLGMVT 1115 fggtpvpCdvisssss..tqivCktPpva.ggpsppvvtvsvdgggsgdg ++g+p C v+ ++++ ++++vC t+++ ++ + v+v g g KIAA0407 1116 VAGVP--CAVDAQEYEvsSSLVCITGASGeEVAGA--TAVEVPGRG---- 1157 rssspvtFtY<-* r+ s+ +F Y KIAA0407 1158 RGVSEHDFAY 1167 PF01833.14.ls: domain 2 of 3, from 1170 to 1256: score 79.6, E = 9.2e-21 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt P+++si+P +gp +GGt++T+ Gs+l +g +edi+V+ KIAA0407 1170 PKVHSIFPARGPRAGGTRLTLNGSKLLTG----------RLEDIRVV 1206 fggtpvpCdvissssstqivCktPpva.ggpsppvvtvsvdgggsgdgrs +g++p C++ + ++s+q++C+t p +++ + p v v ++ + r+ KIAA0407 1207 VGDQP--CHLLPEQQSEQLRCETSPRPtPATLP--VAVWFGATE----RR 1248 sspvtFtY<-* + ++F Y KIAA0407 1249 LQRGQFKY 1256 PF01833.14.fs: domain 2 of 3, from 1170 to 1256: score 77.8, E = 8.3e-22 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt P+++si+P +gp +GGt++T+ Gs+l +g +edi+V+ KIAA0407 1170 PKVHSIFPARGPRAGGTRLTLNGSKLLTG----------RLEDIRVV 1206 fggtpvpCdvissssstqivCktPpva.ggpsppvvtvsvdgggsgdgrs +g++p C++ + ++s+q++C+t p +++ + p v v ++ + r+ KIAA0407 1207 VGDQP--CHLLPEQQSEQLRCETSPRPtPATLP--VAVWFGATE----RR 1248 sspvtFtY<-* + ++F Y KIAA0407 1249 LQRGQFKY 1256 PF01833.14.ls: domain 3 of 3, from 1260 to 1382: score 93.9, E = 4.3e-25 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt P Its +P++++lsGG ei ++G+nl+ +++Prir Vt KIAA0407 1260 PNITSAGPTKSFLSGGREICVRGQNLDVVQTPRIR----------VT 1296 fggtpv...............................pCdvissssstqi + ++ +++++ +++++ +++ + +++ ++++ ++pC+v+ss+ i KIAA0407 1297 VVSRMLqpsqglgrrrrvvpetacslgpscssqqfeePCHVNSSQL---I 1343 vCktPpva.ggpsppvvtvsvdggg.sgdgrssspvtFtY<-* +C+tP++++ ++p+ v+v++ +++ ++d+++ +p++F+Y KIAA0407 1344 TCRTPALPgLPEDPW-VRVEFILDNlVFDFATLNPTPFSY 1382 PF01833.14.fs: domain 3 of 3, from 1260 to 1382: score 92.1, E = 6.1e-26 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt P Its +P++++lsGG ei ++G+nl+ +++Prir Vt KIAA0407 1260 PNITSAGPTKSFLSGGREICVRGQNLDVVQTPRIR----------VT 1296 fggtpv...............................pCdvissssstqi + ++ +++++ +++++ +++ + +++ ++++ ++pC+v+ss+ i KIAA0407 1297 VVSRMLqpsqglgrrrrvvpetacslgpscssqqfeePCHVNSSQL---I 1343 vCktPpva.ggpsppvvtvsvdggg.sgdgrssspvtFtY<-* +C+tP++++ ++p+ v+v++ +++ ++d+++ +p++F+Y KIAA0407 1344 TCRTPALPgLPEDPW-VRVEFILDNlVFDFATLNPTPFSY 1382 PF08337.2.fs: domain 1 of 1, from 1569 to 2110: score 1346.6, E = 0 *->sGiPfLDYktYaeRvFFpkpGhedHPvLkdlevpesraptveegLtq sGiPfLDYk YaeR+FF pGh+++P+++dl vpesr+ptve+gL+q KIAA0407 1569 SGIPFLDYKVYAERIFF--PGHRESPLHRDLGVPESRRPTVEQGLGQ 1613 FsqLLnNKsFLltfIhTLEsQrsFSvRDRvnvASLLmvaLqgKLeYcTdI +s+LLn+K+FL++fIhTLEsQr+FS+RDR++vASLL+vaL+gKLeY+TdI KIAA0407 1614 LSNLLNSKLFLTKFIHTLESQRTFSARDRAYVASLLTVALHGKLEYFTDI 1663 LktLLrdLIeksvesKnnPKLmLRRTESVVEKMLTNWmSiCLYdfLKeta L+tLL+dL++++ ++K nPKLmLRRTE+VVEK+LTNWmSiCLY+f+++++ KIAA0407 1664 LRTLLSDLVAQY-VAK-NPKLMLRRTETVVEKLLTNWMSICLYTFVRDSV 1711 GepLflLfkAIKqQieKGPVDAvTgkARYTLnEekLLReqveykpltlnC GepL++Lf++IK+Q++KGPVD+vTgkA+YTLn+++LLRe+vey+pltln KIAA0407 1712 GEPLYMLFRGIKHQVDKGPVDSVTGKAKYTLNDNRLLREDVEYRPLTLN- 1760 VilevqpegdeadgvrnvpVkVLDCDTItQVKeKiLdavYkgtPySqRPr ++l+v+p + ea+g vpVkVLDCDTI+Q+KeK+Ld++Ykg+P +qRP+ KIAA0407 1761 ALLAVGPGAGEAQG---VPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPD 1807 vedldLEWrtGrrghliLqDveDvTskiegglwKRLNTLaHYgVpDGAtl +++ld+EWr+G +ghliL+D eDvTs+++g w+RLNTL+HY+VpDGAt+ KIAA0407 1808 PRTLDVEWRSGVAGHLILSD-EDVTSEVQGL-WRRLNTLQHYKVPDGATV 1855 aLvpkqntassynisilStksekstsiltdnssryestlrldssddslgs aLvp+ ++++ ++++d+++g+ KIAA0407 1856 ALVPC----LTKHVL-------------------------RENQDYVPGE 1876 rsdlledgqesGvklwHLVkPtdelveqkkgkRqslklkeredrkKaipE r+++led++e+G+++wHLVkP+de +e+++++R+sl+++ere r+KaipE KIAA0407 1877 RTPMLEDVDEGGIRPWHLVKPSDE-PEPPRPRRGSLRGGERE-RAKAIPE 1924 IYLTRLLstKGTLQKFVDDLFesILStaHrnsalPlAvKYfFDFLDeqAe IYLTRLLs+KGTLQKFVDDLF++ILS +++++PlAvKYfFD+LDeqA+ KIAA0407 1925 IYLTRLLSMKGTLQKFVDDLFQVILS---TSRPVPLAVKYFFDLLDEQAQ 1971 khgIsDpDvvHiWKsNsLPLRFWVNiiKNPqFVFDIhKtdsvDAcLSViA +hgIsD+D++HiWK+NsLPLRFW+NiiKNPqFVFD++++d++DA+L ViA KIAA0407 1972 QHGISDQDTIHIWKTNSLPLRFWINIIKNPQFVFDVQTSDNMDAVLLVIA 2021 QTFMDACStsEhrLGKDSPSNKLLYAKDIPrYkkmVerYYkdIrdmppiS QTFMDAC++++h+LG+DSP+NKLLYA+DIPrYk+mVerYY+dIr+++p+S KIAA0407 2022 QTFMDACTLADHKLGRDSPINKLLYARDIPRYKRMVERYYADIRQTVPAS 2071 dQEMnaaLaeeSrkhsnefntlvALnELYkYvkKYrdqI<-* dQEMn++Lae+S+++s++++++vAL+ELYkY++KY+dqI KIAA0407 2072 DQEMNSVLAELSWNYSGDLGARVALHELYKYINKYYDQI 2110 PF08337.2.ls: domain 1 of 1, from 1569 to 2110: score 1348.4, E = 0 *->sGiPfLDYktYaeRvFFpkpGhedHPvLkdlevpesraptveegLtq sGiPfLDYk YaeR+FF pGh+++P+++dl vpesr+ptve+gL+q KIAA0407 1569 SGIPFLDYKVYAERIFF--PGHRESPLHRDLGVPESRRPTVEQGLGQ 1613 FsqLLnNKsFLltfIhTLEsQrsFSvRDRvnvASLLmvaLqgKLeYcTdI +s+LLn+K+FL++fIhTLEsQr+FS+RDR++vASLL+vaL+gKLeY+TdI KIAA0407 1614 LSNLLNSKLFLTKFIHTLESQRTFSARDRAYVASLLTVALHGKLEYFTDI 1663 LktLLrdLIeksvesKnnPKLmLRRTESVVEKMLTNWmSiCLYdfLKeta L+tLL+dL++++ ++K nPKLmLRRTE+VVEK+LTNWmSiCLY+f+++++ KIAA0407 1664 LRTLLSDLVAQY-VAK-NPKLMLRRTETVVEKLLTNWMSICLYTFVRDSV 1711 GepLflLfkAIKqQieKGPVDAvTgkARYTLnEekLLReqveykpltlnC GepL++Lf++IK+Q++KGPVD+vTgkA+YTLn+++LLRe+vey+pltln KIAA0407 1712 GEPLYMLFRGIKHQVDKGPVDSVTGKAKYTLNDNRLLREDVEYRPLTLN- 1760 VilevqpegdeadgvrnvpVkVLDCDTItQVKeKiLdavYkgtPySqRPr ++l+v+p + ea+g vpVkVLDCDTI+Q+KeK+Ld++Ykg+P +qRP+ KIAA0407 1761 ALLAVGPGAGEAQG---VPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPD 1807 vedldLEWrtGrrghliLqDveDvTskiegglwKRLNTLaHYgVpDGAtl +++ld+EWr+G +ghliL+D eDvTs+++g w+RLNTL+HY+VpDGAt+ KIAA0407 1808 PRTLDVEWRSGVAGHLILSD-EDVTSEVQGL-WRRLNTLQHYKVPDGATV 1855 aLvpkqntassynisilStksekstsiltdnssryestlrldssddslgs aLvp+ ++++ ++++d+++g+ KIAA0407 1856 ALVPC----LTKHVL-------------------------RENQDYVPGE 1876 rsdlledgqesGvklwHLVkPtdelveqkkgkRqslklkeredrkKaipE r+++led++e+G+++wHLVkP+de +e+++++R+sl+++ere r+KaipE KIAA0407 1877 RTPMLEDVDEGGIRPWHLVKPSDE-PEPPRPRRGSLRGGERE-RAKAIPE 1924 IYLTRLLstKGTLQKFVDDLFesILStaHrnsalPlAvKYfFDFLDeqAe IYLTRLLs+KGTLQKFVDDLF++ILS +++++PlAvKYfFD+LDeqA+ KIAA0407 1925 IYLTRLLSMKGTLQKFVDDLFQVILS---TSRPVPLAVKYFFDLLDEQAQ 1971 khgIsDpDvvHiWKsNsLPLRFWVNiiKNPqFVFDIhKtdsvDAcLSViA +hgIsD+D++HiWK+NsLPLRFW+NiiKNPqFVFD++++d++DA+L ViA KIAA0407 1972 QHGISDQDTIHIWKTNSLPLRFWINIIKNPQFVFDVQTSDNMDAVLLVIA 2021 QTFMDACStsEhrLGKDSPSNKLLYAKDIPrYkkmVerYYkdIrdmppiS QTFMDAC++++h+LG+DSP+NKLLYA+DIPrYk+mVerYY+dIr+++p+S KIAA0407 2022 QTFMDACTLADHKLGRDSPINKLLYARDIPRYKRMVERYYADIRQTVPAS 2071 dQEMnaaLaeeSrkhsnefntlvALnELYkYvkKYrdqI<-* dQEMn++Lae+S+++s++++++vAL+ELYkY++KY+dqI KIAA0407 2072 DQEMNSVLAELSWNYSGDLGARVALHELYKYINKYYDQI 2110 //