hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02084694/chunk_1/iprscan-20080502-02084694.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0407 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00630 392.6 2.3e-113 1 SM00429 261.7 5.8e-74 3 SM00423 126.6 2.7e-33 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00630 1/1 43 471 .. 1 532 [] 392.6 2.3e-113 SM00423 1/3 489 542 .. 1 56 [] 61.1 1.4e-13 SM00423 2/3 636 686 .. 1 56 [] 27.6 0.0017 SM00423 3/3 1029 1076 .. 1 56 [] 37.9 1.3e-06 SM00429 1/3 1077 1168 .. 1 111 [] 88.3 9.2e-22 SM00429 2/3 1169 1257 .. 1 111 [] 93.3 2.9e-23 SM00429 3/3 1259 1383 .. 1 111 [] 80.2 2.6e-19 Alignments of top-scoring domains: SM00630: domain 1 of 1, from 43 to 471: score 392.6, E = 2.3e-113 *->fnhllldedsgierlyVGArNriysLslpnlsllsevvtgpvldwps ++hl+ d+ sg +ly+GA+N +++Ls p l+l+++v+tgpvld+++ KIAA0407 43 LQHLARDPTSG--TLYLGATNFLFQLS-PGLQLEATVSTGPVLDSRD 86 ceepnekclkceeCaakgkeeCssneteCdNyirvLlvdndhiadthLyv c + + ++++ +++++++N +++Llv++ + L+v KIAA0407 87 CLP--------PVMPDEC-----PQAQPTNNPNQLLLVSP-----GALVV 118 CGTnafgPdVtCrlinlgdlepadeseaedqiltlclyskevnlsesgrg CG++ +g+ C+ ++lg+ +q l +++++++ ++++ KIAA0407 119 CGSVHQGV---CEQRRLGQ---------LEQLLLRPERPGDTQYVAA--- 153 kCPydPlgsstsvvvdggvPgggeLYsgtsadfsgvalsysssdpiifRs +dP++s++++v++g + g + L++g ++ +gv+ ++pi+ R KIAA0407 154 ---NDPAVSTVGLVAQGLA-GEPLLFVGRGYTSRGVGGG---IPPITTRA 196 lgttqdgfefefhslrttiydskwgydlnepnFVyaFeipesgdgdfVYF l++++++++f+++ + ++ +++ + +FV+aF+ g +YF KIAA0407 197 LWPPDPQAAFSYEETAKLAVGRLS---EYSHHFVSAFAR-----GASAYF 238 FFrEtaveainrdcssekavvsRVARvCknDvGGqrlLqkkWtSFLKarL +F ++ +a +s +a++++V RvC++D ++++S+++++L KIAA0407 239 LFLRRDLQA----QS--RAFRAYVSRVCLRD--------QHYYSYVELPL 274 nCsvpgkggvrefyFneLQavfllppGaLArelgiesddvlYgVFsqgqq C gg r ++++Qa+ ++++ re + +vl+++Fs ++ KIAA0407 275 ACE----GG-R---YGLIQAAAVATS----REVA--HGEVLFAAFSSAAP 310 tssr...d.aanpipgSAVCaFslkdInavFneGpfkcyegpnsawlpve +++++++ aa++ + SA+CaF+l+++++ n+ +++cy+++ +a+ +e KIAA0407 311 PTVGrppSaAAGASGASALCAFPLDEVDRLANRTRDACYTREGRAEDGTE 360 gnkvPyprPGtCisntfregrndssskdlPddvlnfikdhpLmdeavpPl +++ y +++C ++ d d ++++ ++ p++ ++ Pl KIAA0407 361 VAYIEYDVNSDC----------AQLPVDTLDAYPCGSDHTPSPMASRVPL 400 tgrPllvktgtdyrlTsiaVdrvrgldGgkneytVlFlGTsdGrvlKvvv +++P+l ++ + +lT++aV++++g +t++FlG s+G++++v++ KIAA0407 401 EATPILEWP--GIQLTAVAVTMEDG-------HTIAFLGDSQGQLHRVYL 441 srsssssssaglesvlleelqvfppgsepirdmvlsskk<-* ++s+ +++++ ++ + gs+++rd++++++ KIAA0407 442 GPGSD--------GHPYSTQSIQQ-GSAVSRDLTFDGTF 471 SM00423: domain 1 of 3, from 489 to 542: score 61.1, E = 1.4e-13 *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw C+q+ +C++Cl++rdpy CgWC++ grC+r+++C++++g++q + KIAA0407 489 SCAQH--LDCASCLAHRDPY-CGWCVLLGRCSRRSECSRGQGPEQWL 532 ssg.pssqCp<-* s +p+ +C KIAA0407 533 WSFqPELGCL 542 SM00423: domain 2 of 3, from 636 to 686: score 27.6, E = 0.0017 *->rCsqygv....tsCseCllardpygCgWCssegrCtrgerCderrgs +C + ++ +++ C++C+++r++ C WC++++ Ct++++Cd KIAA0407 636 DCVAVTElrpsAQCQACVSSRWG--CNWCVWQHLCTHKASCDA---G 677 rqnwssgpssqCp<-* ++ +s+ q p KIAA0407 678 PMVASH----QSP 686 SM00423: domain 3 of 3, from 1029 to 1076: score 37.9, E = 1.3e-06 *->rCsqygvtsCseCllardpygCgWCss.egrCtrgerCderrgsrqn +Cs+++ ++Cs C a + ygC WC +++ rC+++e+C+e ++ KIAA0407 1029 DCSVGH-GDCSRCQTAMPQYGCVWCEGeRPRCVTREACGE-----AE 1069 wssgpssqCp<-* ++ +qCp KIAA0407 1070 AVA---TQCP 1076 SM00429: domain 1 of 3, from 1077 to 1168: score 88.3, E = 9.2e-22 *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe P I++++P +Gp+ GGt r+t++G+nL+ ++++v + v+v+ + KIAA0407 1077 APLIHSVEPLTGPVDGGT-RVTIRGSNLGQHVQDVLGMVTVA----G 1118 vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdngg vpC ++ ++++ s+++vC t+++ ++ +g v ev +++g KIAA0407 1119 VPCAVDAQEYE---VSSSLVCITGASGEE--VAGATAV----EVPGRGRG 1159 vrtelsppspFtYv<-* v+ +F Y KIAA0407 1160 VSE-----HDFAYQ 1168 SM00429: domain 2 of 3, from 1169 to 1257: score 93.3, E = 2.9e-23 *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe dP++++i+P +Gp++GGt r+tl G+ L + g + +rv vg KIAA0407 1169 DPKVHSIFPARGPRAGGT-RLTLNGSKLLT-GRLEDIRVVVG----D 1209 vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdngg +pC++lp++++ ++++C+t p + +p++ pv v+f+ + KIAA0407 1210 QPCHLLPEQQS-----EQLRCETSPRP----TPATLPV----AVWFGATE 1246 vrtelsppspFtYv<-* +r + +F Y+ KIAA0407 1247 RRLQ---RGQFKYT 1257 SM00429: domain 3 of 3, from 1259 to 1383: score 80.2, E = 2.6e-19 *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe dP It+ P++++lsGG+ +i ++G+nLd+ ++ +++rv+v KIAA0407 1259 DPNITSAGPTKSFLSGGR-EICVRGQNLDV-VQTPRIRVTV------ 1297 vpCtflpsdvhG...........................kdsstaivCrt v+ +++ps+ G++++ +++ + +++ ++++ +++ +++ss i+Crt KIAA0407 1298 VSRMLQPSQGLGrrrrvvpetacslgpscssqqfeepchVNSSQLITCRT 1347 Ppylnqspgpgsvpvrvtgevgfdnggvrtel.sppspFtYv<-* P+ ++ +p + vrv e+ +dn +++ +++p pF+Y KIAA0407 1348 PALPG---LPEDPWVRV--EFILDNLVFDF-AtLNPTPFSYE 1383 //