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Gene/Protein Characteristic Table for KIAA0620

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Product ID	ORK00578
Accession No	AB014520
Description	plexin D1
Clone name	hg04174
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328, AmpR). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACG CGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (6753 bp) Predicted protein sequence (1984 aa)
HaloTag ORF Clone	FHC00578
Flexi ORF Clone	FXC00578
Source	Human adult brain
Rouge ID	mKIAA0620 by Kazusa Mouse cDNA Project

Length: 6753 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 1984 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against HUGE database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001627	119	589	PF01403	Semaphorin/CD100 antigen
	IPR002165	608	661	PF01437	Plexin
	IPR002165	761	813	PF01437	Plexin
	IPR002909	951	1038	PF01833	Cell surface receptor IPT/TIG
	IPR002909	1041	1125	PF01833	Cell surface receptor IPT/TIG
	IPR002909	1129	1210	PF01833	Cell surface receptor IPT/TIG
	IPR013548	1404	1948	PF08337	Plexin cytoplasmic region
HMMSmart	IPR001627	119	589	SM00630	Semaphorin/CD100 antigen
	IPR003659	608	661	SM00423	Plexin/semaphorin/integrin
	IPR003659	761	813	SM00423	Plexin/semaphorin/integrin
	IPR003659	908	949	SM00423	Plexin/semaphorin/integrin
	IPR002909	950	1039	SM00429	Cell surface receptor IPT/TIG
	IPR002909	1040	1126	SM00429	Cell surface receptor IPT/TIG
	IPR002909	1128	1207	SM00429	Cell surface receptor IPT/TIG
ProfileScan	IPR001627	96	606	PS51004	Semaphorin/CD100 antigen

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1329	ETAIIVSIVICSVLLLLSVVALF	1351	PRIMARY	23

RT-PCR

RT-PCR-ELISA

Experimental conditions

Chromosome No. 3
Experimental conditions

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