BLASTX alignment cluster 2    (11436..18206)

Local alignments in this cluster

gi|3402755|gnl|PID|e1314599[fasta] (AL031187) putative transposable element [Arabidopsis thaliana]
Length 1308 aa
position (link: detail on the area) subject position direction score
75827..75681 (556..604) - 78
17721..18206 (1147..1308) + 590
16512..17654 (771..1151) + 1361
15720..16391 (506..729) + 936
15555..15692 (461..506) + 204
15161..15631 (330..486) + 549
15017..15172 (231..282) + 200
14987..15082 (223..254) + 93
14918..14974 (199..217) + 69
14847..14918 (175..198) + 111
14326..14844 (1..173) + 61
13765..13394 (880..1003) - 286
13333..13214 (1025..1064) - 57
12879..12655 (1153..1227) - 200
12648..12439 (1229..1298) - 120

gi|99721|pir||S05465[fasta] retrovirus-related polyprotein - Arabidopsis thaliana retrotransposon Ta1-3
gi|16534 (X13291) polyprotein [Arabidopsis thaliana]
Length 1291 aa
position (link: detail on the area) subject position direction score
75827..75669 (575..627) - 91
16524..17996 (801..1291) + 1534
15555..16352 (470..735) + 1107
15164..15631 (340..495) + 463
14969..15169 (224..290) + 179
14918..15085 (205..260) + 158
14338..14982 (11..225) + 2667
13756..13394 (909..1029) - 275
13333..13223 (1051..1087) - 60
13004..12912 (1164..1194) - 61
12870..12652 (1209..1281) - 201
11761..11588 (1179..1236) - 102
11576..11475 (1241..1274) - 61

gi|99719|pir||S23319[fasta] hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2 (strain Landsberg) (fragment)
gi|16384 (X53976) orf 2 [Arabidopsis thaliana]
Length 1084 aa
position (link: detail on the area) subject position direction score
17316..17678 (964..1084) + 400
16524..17315 (701..964) + 784
15555..16352 (370..635) + 1073
15176..15631 (244..395) + 474
15011..15169 (138..190) + 190
14918..15085 (105..160) + 164
14847..14918 (81..104) + 87
14620..14841 (5..78) + 120
13896..13855 (746..759) - 37
13828..13781 (784..799) - 39
13756..13394 (809..929) - 298
13291..13214 (964..989) - 51

gi|3687234[fasta] (AC005169) putative copia-like transposable element [Arabidopsis thaliana]
Length 1137 aa
position (link: detail on the area) subject position direction score
17865..18200 (1023..1134) + 319
17547..17810 (933..1020) + 272
16620..17543 (621..928) + 790
16530..16607 (583..608) + 68
15747..16367 (319..525) + 665
15065..15199 (198..242) + 78
14918..15058 (159..205) + 62
14853..14915 (137..157) + 57
14524..14844 (27..133) + 678
13765..13373 (694..824) - 269
13333..13214 (839..878) - 83
13204..13106 (884..916) - 51
13001..12912 (956..985) - 59
12864..12808 (1002..1020) - 80
12756..12658 (1022..1054) - 76
12639..12463 (1060..1118) - 144

gi|1167523|gnl|PID|d1012341[fasta] (D83003) ORF(AA 1-1338) [Nicotiana tabacum]
Length 1338 aa
position (link: detail on the area) subject position direction score
17754..18188 (1178..1322) + 351
17508..17726 (1097..1169) + 229
16842..17510 (872..1094) + 554
16656..16820 (811..865) + 102
16203..16397 (660..724) + 106
15900..16199 (556..655) + 207
15711..15890 (494..553) + 161
15440..15532 (405..435) + 70
15218..15427 (332..401) + 94
15017..15136 (204..243) + 97
14563..14844 (53..146) + 132
13834..13394 (848..994) - 354
13330..13214 (1017..1055) - 61
13225..13100 (1054..1095) - 47
13001..12915 (1133..1161) - 67
12879..12658 (1173..1246) - 179
12633..12409 (1254..1328) - 121

show all (83) hits

   gi|130582|sp|P10978|POLX_TOBAC
   gi|99755|pir||S23312
   gi|2443320|dbj||D85597_1
   gi|2961349|gnl|PID|e1273348
   gi|3513747
   gi|2642431
   gi|2194136
   gi|3319362
   gi|2245104|gnl|PID|e327541
   gi|1169016|sp|P04146|COPI_DROME
   gi|391657|gnl|PID|d1002178
   gi|2586082
   gi|224534|prf||1107279B
   gi|74599|pir||OFFFCP
   gi|3779026
   gi|2244802|gnl|PID|e326892
   gi|531389
   gi|2213582
   gi|3269282|gnl|PID|e1308241
   gi|950319
   gi|4234852
   gi|3935164
   gi|99730|pir||S23315
   gi|3645899
   gi|3600044
   gi|4234854
   gi|2865424
   gi|2865431
   gi|2865427
   gi|3777527
   gi|85105|pir||S00954
   gi|3924609
   gi|479178|pir||S32437
   gi|3021268|gnl|PID|e1285457
   gi|4063762
   gi|3779021
   gi|3269281|gnl|PID|e1308240
   gi|3695393
   gi|345511|pir||PC1232
   gi|2865437
   gi|2245044|gnl|PID|e327020
   gi|99727|pir||S23313
   gi|4239843|gnl|PID|d1038446
   gi|4006831
   gi|1335694|gnl|PID|e1951
   gi|2865202
   gi|1916937
   gi|421955|pir||S25787
   gi|4185312
   gi|1769898|gnl|PID|e283238
   gi|2415368
   gi|2462935|gnl|PID|e353245
   gi|3650035
   gi|3250687|gnl|PID|e1301049
   gi|4249381
   gi|553073
   gi|283051|pir||S27768
   gi|2244959|gnl|PID|e326966
   gi|2462936|gnl|PID|e353246
   gi|2827718|gnl|PID|e1248853
   gi|99729|pir||S23314
   gi|421954|pir||S25786
   gi|2244960|gnl|PID|e326967
   gi|2244942|gnl|PID|e326955
   gi|498931
   gi|3273766
   gi|2636719
   gi|3273718
   gi|1785739|gnl|PID|e283457
   gi|140418|sp|P25600|YCH4_YEAST
   gi|539014|pir||E53226
   gi|539015|pir||F53226
   gi|2146769|pir||S71291
   gi|99726|pir||S23320
   gi|2997694
   gi|320565|pir||A60767
   gi|99726|pir||S23320
   gi|320565|pir||A60767

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