information on T27D20    (13765..13373)

Direction: -

Frame: 1

ORF

    13882..13019  (Met: 13861 13612 13561 13438)
RSYNSSSMEGRYCSRDELPRGKKTVTSKWVFTIKYKSDGEIERYKARLVARGFTQTYGED
YLDTFAPVAKLHTFRVVLSLATNLEWDLWQMDVKNAFLQGELEEEVYMKPPPGLEVINAP
NKVFKLKKAIYGLKQSPRAWYHKLSTTLMGRGFKTSEADNTLFTLPSQKGIVVILVYVDD
IIISGNDKVGIQDTKTFLKSVFDIKDLGELKYFLGIEVCRSKEGLFLSQRKYTLDLLAQV
GKLGVKPAKTPLEDDYKAKRKGEHDNKPFEDATRYRRLVGKLIYLTIT

GenBank annotation

    13861..12394    T27D20.7

BLASTX cluster

    18206..11436    cluster 2    83 hits for protein gene

BLASTN cluster

    None

GENSCAN

    14159..9109    gene model 3
    14159..9109    gene model 3

    Suboptimal exon

        13861..13261    Init    Phase: 0    Score: 0.131
        13861..13319    Init    Phase: 0    Score: 0.102

Grail



    Shadow exon

        13861..13016    exon    Phase: 0    Score: 99



Exon-Intron boundary candidatates



Acceptor




13161 [0.56N/0.612] (1)
13193 [0.001] (2)
13216 [0.002] (0)
13223 [0.94N/0.078] (2)




13230 [0.002] (1)
13233 [0.009] (1)
13266 [0.021] (1)
13347 [0.117] (1)




13480 [0.004] (0)
13584 [0.020] (1)
13841 [0.007] (2)
13855 [0.004] (0)





Donor



13045 [0.92N/0.152] (1)
13162 [0.009] (1)
13213 [0.007] (1)
13261 [0.007] (1)



13315 [0.530] (1)
13319 [1.00N/0.975] (0)
13375 [0.99N/0.501] (1)
13419 [0.008] (2)



13428 [0.007] (2)
13538 [0.013] (0)
13546 [0.004] (1)
13716 [0.014] (2)



13822 [0.89N/0.953] (1)










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Entrance