information on T27D20    (15900..16199)

Direction: +

Frame: 3

ORF

    15534..16526  (Met: 15606 15774 15987 16002 16020 16075 16053 16058 16084)
RSYKANRLIEKKEFKDLDFCEHYVMGKSKKLSFNVGKHVTEDILGYVHADLWGSPNVTPS
ISGKQYFLSIIDDKSRKVWLMFLKSKDETFDKFCEWKEIVENHVGKKVKTLRTDNGLEFC
NNRFNDYCAKTGIERHRTCTYTPQQNGVTKRMNRTIMEKVRCMLDESGLEETF**LQQQM
HT*NRSPASAVDHNVPEQLWLNREPGYKHLRRFSSIAYVHQEQGKLKPRVLKGVFLGYPQ
GTKGYKVWLIDEEKCVISRNVVFNEDSVFKDLQSGSKDEDETVTQESQIEIETPPKSELE
TQNQVQGGATQVQLNDSEDEYNDVEGVVT

GenBank annotation

    14338..18209    T27D20.5

BLASTX cluster

    None

BLASTN cluster

    None

GENSCAN

    14338..17984    gene model 4
    Suboptimal exon

        15655..16015    Intr    Phase: 1    Score: 0.359
        16094..16526    Term    Phase: 2    Score: 0.538

Grail

    15554..15720    exon    Phase: 2    Score: 89
    15774..16010    exon    Phase: 0    Score: 55
    16069..16282    exon    Phase: 1    Score: 49
    16342..16529    exon    Phase: 1    Score: 82

Exon-Intron boundary candidatates

Acceptor
15554 [0.002] (2) 15655 [0.86N/0.035] (1) 15748 [0.017] (1) 15810 [0.001] (0)
15825 [0.003] (0) 15835 [0.001] (1) 15902 [0.93N/0.576] (2) 15924 [0.002] (0)
15938 [0.001] (2) 16036 [0.050] (1) 16094 [0.708] (2) 16111 [0.005] (1)
16129 [0.002] (1) 16134 [0.007] (0) 16189 [0.003] (1) 16313 [0.003] (2)
16316 [0.94N/0.079] (2) 16336 [0.032] (1) 16342 [0.005] (1) 16350 [0.024] (0)
16359 [0.020] (0) 16363 [0.004] (1) 16395 [0.005] (0) 16446 [0.002] (0)
16516 [0.003] (1) 16522 [0.008] (1)
Donor
15639 [0.012] (1) 15701 [0.74N] (0) 15720 [1.00N/0.530] (1) 15854 [0.74N/0.132] (0)
16010 [0.222] (0) 16015 [0.014] (2) 16093 [0.013] (2) 16209 [0.92N] (1)
16269 [0.204] (1) 16277 [1.00N/0.194] (0) 16282 [0.043] (2) 16451 [0.044] (0)
16458 [0.014] (1)

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