information on T27D20
(13765..13394)
Direction: -
Frame: 1
ORF
13882..13019 (Met: 13861 13612 13561 13438)
RSYNSSSMEGRYCSRDELPRGKKTVTSKWVFTIKYKSDGEIERYKARLVARGFTQTYGED
YLDTFAPVAKLHTFRVVLSLATNLEWDLWQMDVKNAFLQGELEEEVYMKPPPGLEVINAP
NKVFKLKKAIYGLKQSPRAWYHKLSTTLMGRGFKTSEADNTLFTLPSQKGIVVILVYVDD
IIISGNDKVGIQDTKTFLKSVFDIKDLGELKYFLGIEVCRSKEGLFLSQRKYTLDLLAQV
GKLGVKPAKTPLEDDYKAKRKGEHDNKPFEDATRYRRLVGKLIYLTIT
GenBank annotation
13861..12394 T27D20.7
BLASTX cluster
18206..11436 cluster 2 83 hits for protein gene
BLASTN cluster
None
GENSCAN
14159..9109 gene model 3
14159..9109 gene model 3
Suboptimal exon
13861..13261 Init Phase: 0 Score: 0.131
13861..13319 Init Phase: 0 Score: 0.102
Grail
Shadow exon
13861..13016 exon Phase: 0 Score: 99
Exon-Intron boundary candidatates
Acceptor |
13161 [0.56N/0.612] (1) |
13193 [0.001] (2) |
13216 [0.002] (0) |
13223 [0.94N/0.078] (2) |
13230 [0.002] (1) |
13233 [0.009] (1) |
13266 [0.021] (1) |
13347 [0.117] (1) |
13480 [0.004] (0) |
13584 [0.020] (1) |
13841 [0.007] (2) |
13855 [0.004] (0) |
Donor |
13045 [0.92N/0.152] (1) |
13162 [0.009] (1) |
13213 [0.007] (1) |
13261 [0.007] (1) |
13315 [0.530] (1) |
13319 [1.00N/0.975] (0) |
13375 [0.99N/0.501] (1) |
13419 [0.008] (2) |
13428 [0.007] (2) |
13538 [0.013] (0) |
13546 [0.004] (1) |
13716 [0.014] (2) |
13822 [0.89N/0.953] (1) |
[help]
Entrance