information on T27D20    (16524..17996)

Direction: +

Frame: 3

ORF

    16056..18192  (Met: 16632 16716 16728 16962 16977 16992 17043 17163 17166 17265 17286 17334 17343 17454 17577 17586 17640 17721 17796 17928 17955 17958 18025 18034 16527 16556 16627 17985 17990)
AETAATDAYLINRSPASAVDHNVPEQLWLNREPGYKHLRRFSSIAYVHQEQGKLKPRVLK
GVFLGYPQGTKGYKVWLIDEEKCVISRNVVFNEDSVFKDLQSGSKDEDETVTQESQIEIE
TPPKSELETQNQVQGGATQVQLNDSEDEYNDVEGVVT*QSEDLSVG*IGSEEQLDHLQNL
LTILSLLLL*MAEEVESEEPVCFHDVKEDKDWEKWHGGMIEEMDSLLKNATWDIVDKPKN
QKVISCHWLYKKKLGIPGVELPRYKARLVARGFSHREGIDYQEVFSPVVKHTSIRILLSL
MVKEDMELEQMDVKTAFLHGELDQTLFMEQPEGFEVNPELDQVCLLKKSLYGLKQAPRQW
NKRFNAFMMDQKFSRSVSDSCVYVKEVSNGECVYLLLYVDDMLLAAKSMTEIKKLKKVLS
REFEMKDMGAASRKLGIDIIRNRSEGTLCLSQTSYLERVIQKFRMDGAKVVNTPIGAHFK
LSSVHNDDERVGSEKVPYSSVVGSLMYAMIGTRPDIAYAIGLVSRFMSKQGEVHWTAVKW
LLRYLKWSIGLNLMYTKGFDFKVQGYCDSDHAADLDKNMSISGYVFTVGGNIVSWKSCLQ
PVVALSTTEAEYIALTKAVKEAMWIRNLLDDMMLGTETAEV**HSLHYVYQRTMLFMKEQ
STLVRSIISSETLLKLVKSKFIRFTRLGIQLICSQKVYQFRSLKQHWSS

GenBank annotation

    14338..18209    T27D20.5

BLASTX cluster

    None

BLASTN cluster

    None

GENSCAN

    14338..17984    gene model 4
    14338..17984    gene model 4
    Suboptimal exon

        16094..16526    Term    Phase: 2    Score: 0.538
        16632..17984    Sngl    Phase: 0    Score: 0.481

Grail

    16069..16282    exon    Phase: 1    Score: 49
    16342..16529    exon    Phase: 1    Score: 82
    16551..17066    exon    Phase: 0    Score: 72
    17454..17987    exon    Phase: 0    Score: 89
    18077..18209    exon    Phase: 2    Score: 51

Exon-Intron boundary candidatates

Acceptor
16094 [0.708] (2) 16111 [0.005] (1) 16129 [0.002] (1) 16134 [0.007] (0)
16189 [0.003] (1) 16313 [0.003] (2) 16316 [0.94N/0.079] (2) 16336 [0.032] (1)
16342 [0.005] (1) 16350 [0.024] (0) 16359 [0.020] (0) 16363 [0.004] (1)
16395 [0.005] (0) 16446 [0.002] (0) 16516 [0.003] (1) 16522 [0.008] (1)
16542 [0.001] (0) 16551 [0.015] (0) 16559 [0.003] (2) 16565 [0.014] (2)
16614 [0.002] (0) 16630 [0.003] (1) 16639 [0.033] (1) 16654 [0.002] (1)
16683 [0.020] (0) 16821 [0.001] (0) 16894 [0.001] (1) 16992 [0.031] (0)
17127 [0.93N/0.255] (0) 17218 [0.002] (1) 17278 [0.437] (1) 17293 [0.011] (1)
17324 [0.006] (2) 17340 [0.003] (0) 17360 [0.004] (2) 17374 [0.001] (1)
17390 [0.006] (2) 17418 [0.004] (0) 17445 [0.005] (0) 17453 [0.004] (2)
17512 [0.007] (1) 17536 [0.085] (1) 17573 [0.003] (2) 17600 [0.001] (2)
17629 [0.006] (1) 17633 [0.001] (2) 17636 [0.314] (2) 17734 [0.003] (1)
17749 [0.76N/0.037] (1) 17754 [0.96N/0.752] (0) 17770 [0.079] (1) 17782 [0.012] (1)
17807 [0.001] (2) 17824 [0.195] (1) 18077 [0.027] (2) 18091 [0.002] (1)
18128 [0.001] (2) 18178 [0.004] (1) 18181 [0.022] (1)
Donor
16093 [0.013] (2) 16209 [0.92N] (1) 16269 [0.204] (1) 16277 [1.00N/0.194] (0)
16282 [0.043] (2) 16451 [0.044] (0) 16458 [0.014] (1) 16565 [0.019] (0)
16661 [0.055] (0) 16861 [0.180] (2) 16997 [0.005] (0) 17066 [1.00N/0.757] (0)
17087 [0.94N/0.106] (0) 17189 [0.045] (0) 17219 [1.00N/0.918] (0) 17229 [0.033] (1)
17283 [0.011] (1) 17435 [0.012] (0) 17468 [0.011] (0) 17578 [0.140] (2)
17635 [0.011] (2) 17680 [0.019] (2) 17689 [1.00N/0.875] (2) 17701 [0.085] (2)
17998 [0.004] (2) 18054 [0.85N/0.062] (1) 18153 [0.129] (1)

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