information on T27D20
(15164..15631)
Direction: +
Frame: 2
ORF
14891..16052 (Met: 14990 15179 15263 15410 15515 15530 15606 15774 15987 16002 16020 15542 15556)
VWEQDSLSTDVVSSAKSLERKLSETQESNKNVSMALYTTDRGRPQVRNQDKQGQGKNRGR
SNSKTRVTCWFCKKEAHVKRDCFARKKKLENENRATMILLGDDHTVESRGCGTIKLNTHG
GLIRMLKNVRYVPNLRRNLISTGTLHSLGYKHEGGEGKLRFYKNGKTALCGYLMNGLYIL
DGHTVATETCNAESAKNSTKLWHSRLGHMSINNMKIL*QTD*EKKEFKDLDFCEHYVMGK
SKKLSFNVGKHVTEDILGYVHADLWGSPNVTPSISGKQYFLSIIDDKSRKVWLMFLKSKD
ETFDKFCEWKEIVENHVGKKVKTLRTDNGLEFCNNRFNDYCAKTGIERHRTCTYTPQQNG
VTKRMNRTIMEKVRCMLDESGLEETF
GenBank annotation
14338..18209 T27D20.5
BLASTX cluster
None
BLASTN cluster
None
GENSCAN
14338..17984 gene model 4
Suboptimal exon
14892..15470 Intr Phase: 1 Score: 0.122
15113..15509 Intr Phase: 0 Score: 0.161
Grail
15009..15544 exon Phase: 1 Score: 63
Exon-Intron boundary candidatates
Acceptor |
14914 [0.002] (2) |
14919 [0.151] (1) |
14961 [0.002] (1) |
15009 [0.86N/0.030] (1) |
15019 [0.003] (2) |
15113 [0.009] (0) |
15280 [0.005] (2) |
15351 [0.014] (1) |
15444 [0.002] (1) |
15447 [0.004] (1) |
15468 [0.006] (1) |
15505 [0.002] (2) |
15554 [0.002] (0) |
15655 [0.86N/0.035] (2) |
15748 [0.017] (2) |
15810 [0.001] (1) |
15825 [0.003] (1) |
15835 [0.001] (2) |
15902 [0.93N/0.576] (0) |
15924 [0.002] (1) |
15938 [0.001] (0) |
16036 [0.050] (2) |
Donor |
15025 [0.023] (0) |
15047 [0.083] (1) |
15065 [1.00N/0.905] (1) |
15069 [0.025] (2) |
15224 [0.006] (1) |
15251 [0.017] (1) |
15274 [0.010] (0) |
15509 [0.006] (1) |
15639 [0.012] (2) |
15701 [0.74N] (1) |
15720 [1.00N/0.530] (2) |
15854 [0.74N/0.132] (1) |
16010 [0.222] (1) |
16015 [0.014] (0) |
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Entrance