information on T27D20    (15164..15631)

Direction: +

Frame: 2

ORF

    14891..16052  (Met: 14990 15179 15263 15410 15515 15530 15606 15774 15987 16002 16020 15542 15556)
VWEQDSLSTDVVSSAKSLERKLSETQESNKNVSMALYTTDRGRPQVRNQDKQGQGKNRGR
SNSKTRVTCWFCKKEAHVKRDCFARKKKLENENRATMILLGDDHTVESRGCGTIKLNTHG
GLIRMLKNVRYVPNLRRNLISTGTLHSLGYKHEGGEGKLRFYKNGKTALCGYLMNGLYIL
DGHTVATETCNAESAKNSTKLWHSRLGHMSINNMKIL*QTD*EKKEFKDLDFCEHYVMGK
SKKLSFNVGKHVTEDILGYVHADLWGSPNVTPSISGKQYFLSIIDDKSRKVWLMFLKSKD
ETFDKFCEWKEIVENHVGKKVKTLRTDNGLEFCNNRFNDYCAKTGIERHRTCTYTPQQNG
VTKRMNRTIMEKVRCMLDESGLEETF

GenBank annotation

    14338..18209    T27D20.5

BLASTX cluster

    None

BLASTN cluster

    None

GENSCAN

    14338..17984    gene model 4
    Suboptimal exon

        14892..15470    Intr    Phase: 1    Score: 0.122
        15113..15509    Intr    Phase: 0    Score: 0.161

Grail

    15009..15544    exon    Phase: 1    Score: 63

Exon-Intron boundary candidatates

Acceptor
14914 [0.002] (2) 14919 [0.151] (1) 14961 [0.002] (1) 15009 [0.86N/0.030] (1)
15019 [0.003] (2) 15113 [0.009] (0) 15280 [0.005] (2) 15351 [0.014] (1)
15444 [0.002] (1) 15447 [0.004] (1) 15468 [0.006] (1) 15505 [0.002] (2)
15554 [0.002] (0) 15655 [0.86N/0.035] (2) 15748 [0.017] (2) 15810 [0.001] (1)
15825 [0.003] (1) 15835 [0.001] (2) 15902 [0.93N/0.576] (0) 15924 [0.002] (1)
15938 [0.001] (0) 16036 [0.050] (2)
Donor
15025 [0.023] (0) 15047 [0.083] (1) 15065 [1.00N/0.905] (1) 15069 [0.025] (2)
15224 [0.006] (1) 15251 [0.017] (1) 15274 [0.010] (0) 15509 [0.006] (1)
15639 [0.012] (2) 15701 [0.74N] (1) 15720 [1.00N/0.530] (2) 15854 [0.74N/0.132] (1)
16010 [0.222] (1) 16015 [0.014] (0)

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Entrance