Jatropha Genome Database

Jcr4S26587.10  
Related links:
Predicted Sequence Links:
Genome Sequence: Jcr4S26587
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl C0LEA6_9ROSI 700 100.0 100.0 (tr|C0LEA6) DNA-directed RNA polymerase subunit alpha OS=Jatropha curcas GN=rpoA PE=3 SV=1
Arabidopsis_pep ATCG00740.1 540 79.2 88.7 | Symbols: RPOA | RNA polymerase subunit alpha | chrC:77901-78890 REVERSE LENGTH=329
soybean_pep Glyma01g40980.1 100 66.7 80.0  
Medicago_pep IMGA|Medtr4g051380.1 555 84.6 90.9 30S ribosomal protein S11, chloroplastic (AHRD V1 *-*- B5LMQ6); contains Interpro domain(s) IPR011773 DNA-directed RNA polymerase, alpha subunit chr04_pseudomolecule_IMGAG_V3.5 15198125-15196604 E EGN_Mt100125 20100825
grape_pep GSVIVT01024860001 116 71.4 77.9  
castor_bean_cds 29917.m001954 198 95.2 95.2 conserved hypothetical protein
castor_bean_pep 29917.m001954 84.0 92.7 97.6 conserved hypothetical protein
JAT_unigene contig00892 1744 97.8 97.8 length=7086 numreads=664 gene=isogroup00047 status=isotig
A list of protein families, domains and functional sites (searches in InterPro)
Jcr4S26587.10 length: 339 aa.
IPR009025 DNA-directed RNA polymerase, RBP11-like
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
superfamily SSF55257 RNAP_RBP11-like 7.199995576545489E-27 10-233
IPR011260 RNA polymerase, alpha subunit, C-terminal
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
BlastProDom PD001179 RNAP_asu_C 0.0 274-312
HMMPfam PF03118 RNA_pol_A_CTD 2.800000000000005E-17 263-325
superfamily SSF47789 RNAP_alpha_C 1.29999924468179E-16 266-336
IPR011261 DNA-directed RNA polymerase, dimerisation
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
Molecular Function GO:0046983 protein dimerization activity    
HMMPfam PF01193 RNA_pol_L 1.9999999999999944E-18 35-230
IPR011262 DNA-directed RNA polymerase, insert domain
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
Molecular Function GO:0046983 protein dimerization activity    
Gene3D G3DSA:2.170.120.12RNAP_insert T[59-176] 3.0999999999999807E-37  
HMMPfam PF01000 RNA_pol_A_bac 1.3999999999999999E-11 66-158
superfamily SSF56553 RNAP_insert 7.699984805336903E-41 59-177
IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMSmart SM00662 RPOLD 9.70001793430487E-21 29-232
IPR011773 DNA-directed RNA polymerase, alpha subunit
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMTigr TIGR02027 RpoA 1.9000000000000045E-84 29-325
no_ID  
Gene3D G3DSA:1.10.150.20G3DSA:1.10.150.20 T[264-338] 2.3000000000000007E-22