Jatropha Genome Database
- Jcr4S26587.10
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Jcr4S26587.10
(339 letters)
Database: trembl
18,215,214 sequences; 5,957,253,786 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
C0LEA6_9ROSI (tr|C0LEA6) DNA-directed RNA polymerase subunit alp... 700 0.0
F2X0E8_HEVBR (tr|F2X0E8) DNA-directed RNA polymerase subunit alp... 663 0.0
B1NWI2_MANES (tr|B1NWI2) DNA-directed RNA polymerase subunit alp... 657 0.0
G1D790_RICCO (tr|G1D790) RNA polymerase alpha subunit OS=Ricinus... 645 0.0
D3WD99_9MAGN (tr|D3WD99) DNA-directed RNA polymerase subunit alp... 628 e-178
D3WEF8_HEUSA (tr|D3WEF8) DNA-directed RNA polymerase subunit alp... 617 e-174
D3WDN3_CORFO (tr|D3WDN3) DNA-directed RNA polymerase subunit alp... 607 e-172
D3WBK6_9AQUA (tr|D3WBK6) DNA-directed RNA polymerase subunit alp... 600 e-170
G2I924_PYRPY (tr|G2I924) RNA polymerase alpha subunit OS=Pyrus p... 598 e-169
F4YKB3_DAVIN (tr|F4YKB3) RNA polymerase alpha subunit protein (F... 596 e-168
E5KUC8_CORLA (tr|E5KUC8) DNA-directed RNA polymerase subunit alp... 595 e-168
E3W0M5_PRUPE (tr|E3W0M5) DNA-directed RNA polymerase subunit alp... 595 e-168
D3WEU4_9ROSI (tr|D3WEU4) DNA-directed RNA polymerase subunit alp... 593 e-167
D3WAW9_AUCJA (tr|D3WAW9) DNA-directed RNA polymerase subunit alp... 590 e-167
F6GPU5_NELLU (tr|F6GPU5) DNA-directed RNA polymerase subunit alp... 587 e-166
F1KLF4_FRAVE (tr|F1KLF4) DNA-directed RNA polymerase subunit alp... 587 e-165
A9QAY1_9APIA (tr|A9QAY1) RNA polymerase alpha subunit (Fragment)... 587 e-165
D3WC13_9MAGN (tr|D3WC13) DNA-directed RNA polymerase subunit alp... 587 e-165
D3WC92_NELNU (tr|D3WC92) DNA-directed RNA polymerase subunit alp... 586 e-165
E0XJK0_PUNGR (tr|E0XJK0) DNA-directed RNA polymerase subunit alp... 586 e-165
F6I9Q3_9LAMI (tr|F6I9Q3) DNA-directed RNA polymerase subunit alp... 585 e-165
F6I9G8_OLEEU (tr|F6I9G8) DNA-directed RNA polymerase subunit alp... 585 e-165
F6I8R3_OLEEU (tr|F6I8R3) DNA-directed RNA polymerase subunit alp... 585 e-165
F4MKS7_OLEEU (tr|F4MKS7) DNA-directed RNA polymerase subunit alp... 585 e-165
D2KLN4_OLEEU (tr|D2KLN4) DNA-directed RNA polymerase subunit alp... 585 e-165
E0XJJ9_PUNGR (tr|E0XJJ9) DNA-directed RNA polymerase subunit alp... 584 e-165
D3WE89_9MAGN (tr|D3WE89) DNA-directed RNA polymerase subunit alp... 584 e-165
G1CCC5_SOLTU (tr|G1CCC5) RNA polymerase alpha subunit OS=Solanum... 582 e-164
G3LV35_9SOLA (tr|G3LV35) RNA polymerase alpha subunit OS=Nicotia... 582 e-164
D7P322_SYZCU (tr|D7P322) DNA-directed RNA polymerase subunit alp... 582 e-164
D3WD28_XIMAM (tr|D3WD28) DNA-directed RNA polymerase subunit alp... 581 e-164
D3WAP0_ANTMA (tr|D3WAP0) DNA-directed RNA polymerase subunit alp... 580 e-164
E9K7T0_9APIA (tr|E9K7T0) DNA-directed RNA polymerase subunit alp... 580 e-163
E3UGZ3_EUCGR (tr|E3UGZ3) DNA-directed RNA polymerase subunit alp... 579 e-163
D3WCH1_NEROL (tr|D3WCH1) DNA-directed RNA polymerase subunit alp... 578 e-163
D3WEM7_LIQST (tr|D3WEM7) DNA-directed RNA polymerase subunit alp... 577 e-162
E3VU19_THECC (tr|E3VU19) DNA-directed RNA polymerase subunit alp... 572 e-161
D3WFE6_9ROSI (tr|D3WFE6) DNA-directed RNA polymerase subunit alp... 572 e-161
B1A967_CARPA (tr|B1A967) DNA-directed RNA polymerase subunit alp... 571 e-161
B0Z576_OENGL (tr|B0Z576) DNA-directed RNA polymerase subunit alp... 571 e-161
B0Z4Z2_OENBI (tr|B0Z4Z2) DNA-directed RNA polymerase subunit alp... 571 e-161
B0Z5G0_OENPA (tr|B0Z5G0) DNA-directed RNA polymerase subunit alp... 570 e-161
B0Z4Q8_OENAR (tr|B0Z4Q8) DNA-directed RNA polymerase subunit alp... 570 e-161
D3WFL7_TROAR (tr|D3WFL7) DNA-directed RNA polymerase subunit alp... 567 e-160
F1AMK6_GOSTH (tr|F1AMK6) DNA-directed RNA polymerase subunit alp... 567 e-160
Q4FGA4_ACOAM (tr|Q4FGA4) RNA polymerase alpha chain (Fragment) O... 566 e-159
B5LMQ5_CICAR (tr|B5LMQ5) DNA-directed RNA polymerase subunit alp... 565 e-159
D3WBC7_9BORA (tr|D3WBC7) DNA-directed RNA polymerase subunit alp... 565 e-159
D3WDV2_9ROSI (tr|D3WDV2) DNA-directed RNA polymerase subunit alp... 565 e-159
B2XWQ5_FAGEA (tr|B2XWQ5) DNA-directed RNA polymerase subunit alp... 564 e-159
D3WF11_PLUAU (tr|D3WF11) DNA-directed RNA polymerase subunit alp... 564 e-159
G0WVQ4_9MAGN (tr|G0WVQ4) RNA polymerase alpha subunit OS=Magnoli... 564 e-159
D3WB48_DILIN (tr|D3WB48) DNA-directed RNA polymerase subunit alp... 560 e-157
Q4FGA1_RANMC (tr|Q4FGA1) RNA polymerase alpha chain (Fragment) O... 560 e-157
B2LMM5_GUIAB (tr|B2LMM5) DNA-directed RNA polymerase subunit alp... 559 e-157
G1FB73_SPIPO (tr|G1FB73) RNA polymerase alpha subunit OS=Spirode... 558 e-157
C3UP04_9MAGN (tr|C3UP04) DNA-directed RNA polymerase subunit alp... 556 e-156
A9QBM7_MUSAC (tr|A9QBM7) RNA polymerase alpha subunit (Fragment)... 555 e-156
Q4QZ04_CHRMO (tr|Q4QZ04) DNA-directed RNA polymerase subunit alp... 553 e-155
B5AH30_9ROSI (tr|B5AH30) DNA-directed RNA polymerase subunit alp... 553 e-155
D3WF78_9ROSI (tr|D3WF78) DNA-directed RNA polymerase subunit alp... 553 e-155
F5C007_ASCSY (tr|F5C007) DNA-directed RNA polymerase subunit alp... 552 e-155
E3W0W0_9ROSI (tr|E3W0W0) DNA-directed RNA polymerase subunit alp... 551 e-155
D3WE20_9ROSA (tr|D3WE20) DNA-directed RNA polymerase subunit alp... 550 e-154
D1L8S0_BRANA (tr|D1L8S0) DNA-directed RNA polymerase subunit alp... 548 e-154
D4PBE3_PHODC (tr|D4PBE3) DNA-directed RNA polymerase subunit alp... 548 e-154
D3WDG7_BULAR (tr|D3WDG7) DNA-directed RNA polymerase subunit alp... 547 e-153
A9QBD4_ELAOL (tr|A9QBD4) RNA polymerase alpha subunit (Fragment)... 546 e-153
A9QC95_TRACE (tr|A9QC95) RNA polymerase alpha subunit (Fragment)... 544 e-153
D7KR04_ARALL (tr|D7KR04) RNA polymerase alpha subunit OS=Arabido... 544 e-152
Q4FG99_9ASPA (tr|Q4FG99) RNA polymerase alpha chain (Fragment) O... 544 e-152
C3KEL6_CERDE (tr|C3KEL6) DNA-directed RNA polymerase subunit alp... 541 e-152
B8R4C0_TRISU (tr|B8R4C0) DNA-directed RNA polymerase subunit alp... 540 e-151
Q4FGA0_TYPLA (tr|Q4FGA0) RNA polymerase alpha chain (Fragment) O... 540 e-151
G3ETS9_CUCME (tr|G3ETS9) RNA polymerase alpha subunit OS=Cucumis... 538 e-151
F6MHQ1_9ASTR (tr|F6MHQ1) DNA-directed RNA polymerase subunit alp... 537 e-150
F6KG62_JACVU (tr|F6KG62) DNA-directed RNA polymerase subunit alp... 536 e-150
D5MAM2_PEA (tr|D5MAM2) DNA-directed RNA polymerase subunit alpha... 533 e-149
B0FIU7_9ASTE (tr|B0FIU7) RNA polymerase alpha subunit (Fragment)... 532 e-149
D3J8J5_VIGRA (tr|D3J8J5) DNA-directed RNA polymerase subunit alp... 530 e-148
G1FBF7_9ARAE (tr|G1FBF7) RNA polymerase alpha subunit OS=Wolffie... 530 e-148
D5HQ58_ONCHC (tr|D5HQ58) DNA-directed RNA polymerase subunit alp... 529 e-148
Q4FGA2_NUPAD (tr|Q4FGA2) RNA polymerase alpha chain (Fragment) O... 527 e-148
B0FIU8_CUSRE (tr|B0FIU8) RNA polymerase alpha subunit (Fragment)... 525 e-147
D5MAQ6_LATSA (tr|D5MAQ6) DNA-directed RNA polymerase subunit alp... 523 e-146
D3WCN7_PHOSE (tr|D3WCN7) DNA-directed RNA polymerase subunit alp... 518 e-145
C7SM26_9POAL (tr|C7SM26) DNA-directed RNA polymerase subunit alp... 517 e-144
B0FIU6_CUSJA (tr|B0FIU6) RNA polymerase alpha subunit (Fragment)... 504 e-141
Q7H6I8_HORMU (tr|Q7H6I8) DNA-directed RNA polymerase subunit alp... 501 e-139
Q7H6F7_PSAFR (tr|Q7H6F7) DNA-directed RNA polymerase subunit alp... 501 e-139
Q7GEC8_HORMG (tr|Q7GEC8) DNA-directed RNA polymerase subunit alp... 501 e-139
Q539W3_9POAL (tr|Q539W3) DNA-directed RNA polymerase subunit alp... 501 e-139
Q539V9_PSAFR (tr|Q539V9) DNA-directed RNA polymerase subunit alp... 501 e-139
Q539V7_9POAL (tr|Q539V7) DNA-directed RNA polymerase subunit alp... 501 e-139
Q539V5_PSARU (tr|Q539V5) DNA-directed RNA polymerase subunit alp... 501 e-139
P92903_9POAL (tr|P92903) DNA-directed RNA polymerase subunit alp... 501 e-139
E3NYY2_9POAL (tr|E3NYY2) DNA-directed RNA polymerase subunit alp... 501 e-139
E3NYX9_9POAL (tr|E3NYX9) DNA-directed RNA polymerase subunit alp... 501 e-139
E3NYX6_9POAL (tr|E3NYX6) DNA-directed RNA polymerase subunit alp... 501 e-139
E3NYX0_9POAL (tr|E3NYX0) DNA-directed RNA polymerase subunit alp... 501 e-139
E3NYW4_LEYCH (tr|E3NYW4) DNA-directed RNA polymerase subunit alp... 501 e-139
E2DRE8_9POAL (tr|E2DRE8) DNA-directed RNA polymerase subunit alp... 501 e-139
E2DRE5_9POAL (tr|E2DRE5) DNA-directed RNA polymerase subunit alp... 501 e-139
E2DRE2_9POAL (tr|E2DRE2) DNA-directed RNA polymerase subunit alp... 501 e-139
E2DRD9_9POAL (tr|E2DRD9) DNA-directed RNA polymerase subunit alp... 501 e-139
E2DRD6_9POAL (tr|E2DRD6) DNA-directed RNA polymerase subunit alp... 501 e-139
E2DRD3_9POAL (tr|E2DRD3) DNA-directed RNA polymerase subunit alp... 501 e-139
E2DRD0_9POAL (tr|E2DRD0) DNA-directed RNA polymerase subunit alp... 501 e-139
E2DRC7_LYMAR (tr|E2DRC7) DNA-directed RNA polymerase subunit alp... 501 e-139
E2DRC1_9POAL (tr|E2DRC1) DNA-directed RNA polymerase subunit alp... 501 e-139
Q7H6I7_9POAL (tr|Q7H6I7) DNA-directed RNA polymerase subunit alp... 499 e-139
Q7GEC7_HORMA (tr|Q7GEC7) DNA-directed RNA polymerase subunit alp... 499 e-139
Q7GEC4_9POAL (tr|Q7GEC4) DNA-directed RNA polymerase subunit alp... 499 e-139
P92900_9POAL (tr|P92900) DNA-directed RNA polymerase subunit alp... 499 e-139
E9L8G8_9POAL (tr|E9L8G8) DNA-directed RNA polymerase subunit alp... 499 e-139
E9L8G3_9POAL (tr|E9L8G3) DNA-directed RNA polymerase subunit alp... 499 e-139
Q6YLW5_9POAL (tr|Q6YLW5) DNA-directed RNA polymerase subunit alp... 499 e-139
Q7H6J3_AUSVE (tr|Q7H6J3) DNA-directed RNA polymerase subunit alp... 499 e-139
Q7H6I6_9POAL (tr|Q7H6I6) DNA-directed RNA polymerase subunit alp... 499 e-139
Q7H6I3_9POAL (tr|Q7H6I3) DNA-directed RNA polymerase subunit alp... 499 e-139
Q7H6I2_9POAL (tr|Q7H6I2) DNA-directed RNA polymerase subunit alp... 499 e-139
Q7H6I1_9POAL (tr|Q7H6I1) DNA-directed RNA polymerase subunit alp... 499 e-139
Q7H6H8_9POAL (tr|Q7H6H8) DNA-directed RNA polymerase subunit alp... 499 e-139
Q7H6H6_9POAL (tr|Q7H6H6) DNA-directed RNA polymerase subunit alp... 499 e-139
Q7H6H1_9POAL (tr|Q7H6H1) DNA-directed RNA polymerase subunit alp... 499 e-139
Q7H6G9_9POAL (tr|Q7H6G9) DNA-directed RNA polymerase subunit alp... 499 e-139
Q7H6G7_9POAL (tr|Q7H6G7) DNA-directed RNA polymerase subunit alp... 499 e-139
Q7H6G6_9POAL (tr|Q7H6G6) DNA-directed RNA polymerase subunit alp... 499 e-139
Q7H6G5_9POAL (tr|Q7H6G5) DNA-directed RNA polymerase subunit alp... 499 e-139
Q7H6G4_9POAL (tr|Q7H6G4) DNA-directed RNA polymerase subunit alp... 499 e-139
Q7H6G2_9POAL (tr|Q7H6G2) DNA-directed RNA polymerase subunit alp... 499 e-139
Q7GED7_9POAL (tr|Q7GED7) DNA-directed RNA polymerase subunit alp... 499 e-139
Q7GEC5_9POAL (tr|Q7GEC5) DNA-directed RNA polymerase subunit alp... 499 e-139
Q6USB6_ELYRE (tr|Q6USB6) DNA-directed RNA polymerase subunit alp... 499 e-139
Q3Y514_9POAL (tr|Q3Y514) DNA-directed RNA polymerase subunit alp... 499 e-139
Q3Y513_9POAL (tr|Q3Y513) DNA-directed RNA polymerase subunit alp... 499 e-139
P92906_LOPEL (tr|P92906) DNA-directed RNA polymerase subunit alp... 499 e-139
E9L8G7_9POAL (tr|E9L8G7) DNA-directed RNA polymerase subunit alp... 499 e-139
E9L8G6_9POAL (tr|E9L8G6) DNA-directed RNA polymerase subunit alp... 499 e-139
E9L8G5_ELYCA (tr|E9L8G5) DNA-directed RNA polymerase subunit alp... 499 e-139
Q7GED2_9POAL (tr|Q7GED2) DNA-directed RNA polymerase subunit alp... 499 e-139
Q7GED1_TRIMO (tr|Q7GED1) DNA-directed RNA polymerase subunit alp... 499 e-139
Q6YLW9_9POAL (tr|Q6YLW9) DNA-directed RNA polymerase subunit alp... 499 e-139
Q6YLW3_9POAL (tr|Q6YLW3) DNA-directed RNA polymerase subunit alp... 499 e-139
Q539V4_9POAL (tr|Q539V4) DNA-directed RNA polymerase subunit alp... 498 e-139
Q3Y512_9POAL (tr|Q3Y512) DNA-directed RNA polymerase subunit alp... 498 e-139
Q6YLW7_AGRCR (tr|Q6YLW7) DNA-directed RNA polymerase subunit alp... 498 e-139
Q6YLW6_9POAL (tr|Q6YLW6) DNA-directed RNA polymerase subunit alp... 498 e-139
Q6YLW4_9POAL (tr|Q6YLW4) DNA-directed RNA polymerase subunit alp... 498 e-139
E2DRC4_9POAL (tr|E2DRC4) DNA-directed RNA polymerase subunit alp... 498 e-139
E2DRB8_9POAL (tr|E2DRB8) DNA-directed RNA polymerase subunit alp... 498 e-139
Q539W0_PSAFR (tr|Q539W0) DNA-directed RNA polymerase subunit alp... 498 e-139
Q539W2_9POAL (tr|Q539W2) DNA-directed RNA polymerase subunit alp... 497 e-139
Q7H6H4_9POAL (tr|Q7H6H4) DNA-directed RNA polymerase subunit alp... 496 e-138
Q6YLV9_9POAL (tr|Q6YLV9) DNA-directed RNA polymerase subunit alp... 496 e-138
Q540Z1_THIBE (tr|Q540Z1) DNA-directed RNA polymerase subunit alp... 496 e-138
Q3Y511_9POAL (tr|Q3Y511) DNA-directed RNA polymerase subunit alp... 495 e-138
F8RXE1_9POAL (tr|F8RXE1) DNA-directed RNA polymerase subunit alp... 494 e-137
F8RY39_9POAL (tr|F8RY39) DNA-directed RNA polymerase subunit alp... 494 e-137
F8RXT0_9POAL (tr|F8RXT0) DNA-directed RNA polymerase subunit alp... 494 e-137
F8RS33_9POAL (tr|F8RS33) DNA-directed RNA polymerase subunit alp... 494 e-137
B2ZE98_9POAL (tr|B2ZE98) DNA-directed RNA polymerase subunit alp... 494 e-137
Q5IBI2_9LAMI (tr|Q5IBI2) RNA polymerase alpha subunit (Fragment)... 494 e-137
Q539W1_9POAL (tr|Q539W1) DNA-directed RNA polymerase subunit alp... 491 e-137
F8RXM3_9POAL (tr|F8RXM3) DNA-directed RNA polymerase subunit alp... 489 e-136
C8XU47_COILA (tr|C8XU47) DNA-directed RNA polymerase subunit alp... 489 e-136
B0FIU3_9ASTE (tr|B0FIU3) RNA polymerase alpha subunit (Fragment)... 487 e-135
E2GJW2_9POAL (tr|E2GJW2) DNA-directed RNA polymerase subunit alp... 487 e-135
B3TN81_BRADI (tr|B3TN81) RNA polymerase alpha subunit (Fragment)... 486 e-135
D8WMU4_9POAL (tr|D8WMU4) DNA-directed RNA polymerase subunit alp... 483 e-134
D8WMR6_9POAL (tr|D8WMR6) DNA-directed RNA polymerase subunit alp... 483 e-134
D8WMS6_9POAL (tr|D8WMS6) DNA-directed RNA polymerase subunit alp... 483 e-134
D8WMU2_9POAL (tr|D8WMU2) DNA-directed RNA polymerase subunit alp... 482 e-134
D8WMT9_9POAL (tr|D8WMT9) DNA-directed RNA polymerase subunit alp... 482 e-134
D8WMS3_9POAL (tr|D8WMS3) DNA-directed RNA polymerase subunit alp... 482 e-134
D8WMS0_9POAL (tr|D8WMS0) DNA-directed RNA polymerase subunit alp... 482 e-134
D8WMS2_9POAL (tr|D8WMS2) DNA-directed RNA polymerase subunit alp... 482 e-134
D8WMT6_9POAL (tr|D8WMT6) DNA-directed RNA polymerase subunit alp... 481 e-134
D8WMS4_9POAL (tr|D8WMS4) DNA-directed RNA polymerase subunit alp... 481 e-134
D8WMS1_9POAL (tr|D8WMS1) DNA-directed RNA polymerase subunit alp... 481 e-133
D8WMU5_9POAL (tr|D8WMU5) DNA-directed RNA polymerase subunit alp... 480 e-133
D8WMT3_9POAL (tr|D8WMT3) DNA-directed RNA polymerase subunit alp... 480 e-133
F8S8D4_9POAL (tr|F8S8D4) DNA-directed RNA polymerase subunit alp... 480 e-133
D8WMR7_9POAL (tr|D8WMR7) DNA-directed RNA polymerase subunit alp... 480 e-133
D8WMT5_9POAL (tr|D8WMT5) DNA-directed RNA polymerase subunit alp... 480 e-133
D8WMS7_9POAL (tr|D8WMS7) DNA-directed RNA polymerase subunit alp... 479 e-133
A9QC21_9ASTR (tr|A9QC21) RNA polymerase alpha subunit (Fragment)... 479 e-133
D8WMU3_9POAL (tr|D8WMU3) DNA-directed RNA polymerase subunit alp... 478 e-133
D8WMT2_9POAL (tr|D8WMT2) DNA-directed RNA polymerase subunit alp... 478 e-133
D8WMT0_9POAL (tr|D8WMT0) DNA-directed RNA polymerase subunit alp... 478 e-133
D3WBT4_LONJA (tr|D3WBT4) RNA polymerase alpha subunit protein OS... 478 e-133
G3EFF9_9POAL (tr|G3EFF9) RNA polymerase alpha subunit OS=Panicum... 478 e-133
B0FIU5_CUSEU (tr|B0FIU5) RNA polymerase alpha subunit (Fragment)... 478 e-133
Q49C94_CUSEU (tr|Q49C94) RpoA OS=Cuscuta europaea GN=rpoA PE=4 SV=1 478 e-133
D8WMT1_9POAL (tr|D8WMT1) DNA-directed RNA polymerase subunit alp... 477 e-132
D8WMU0_9POAL (tr|D8WMU0) DNA-directed RNA polymerase subunit alp... 477 e-132
D8WMS8_9POAL (tr|D8WMS8) DNA-directed RNA polymerase subunit alp... 477 e-132
D8WMS9_9POAL (tr|D8WMS9) DNA-directed RNA polymerase subunit alp... 475 e-132
D8WMR8_9POAL (tr|D8WMR8) DNA-directed RNA polymerase subunit alp... 474 e-132
D8WMU1_9POAL (tr|D8WMU1) DNA-directed RNA polymerase subunit alp... 474 e-131
Q539V6_9POAL (tr|Q539V6) DNA-directed RNA polymerase subunit alp... 474 e-131
F8RYC3_9POAL (tr|F8RYC3) DNA-directed RNA polymerase subunit alp... 472 e-131
C7BFA3_DENLA (tr|C7BFA3) DNA-directed RNA polymerase subunit alp... 472 e-131
C6GJ86_BAMOL (tr|C6GJ86) DNA-directed RNA polymerase subunit alp... 472 e-131
D5HQJ1_ANOMA (tr|D5HQJ1) DNA-directed RNA polymerase subunit alp... 472 e-131
B0FIU4_9ASTE (tr|B0FIU4) RNA polymerase alpha subunit (Fragment)... 472 e-131
E9KJ48_9ORYZ (tr|E9KJ48) DNA-directed RNA polymerase subunit alp... 471 e-131
D8WMS5_9POAL (tr|D8WMS5) DNA-directed RNA polymerase subunit alp... 470 e-130
Q8S1Q6_ORYSJ (tr|Q8S1Q6) Chloroplast RNA polymerase alpha chain ... 470 e-130
E9KIY0_9ORYZ (tr|E9KIY0) DNA-directed RNA polymerase subunit alp... 470 e-130
E9KIR2_ORYSJ (tr|E9KIR2) DNA-directed RNA polymerase subunit alp... 470 e-130
A9L9C8_LEMMI (tr|A9L9C8) RNA polymerase alpha subunit OS=Lemna m... 468 e-130
Q7X6E0_ORYSA (tr|Q7X6E0) OSJNBa0079C19.1 protein OS=Oryza sativa... 465 e-129
Q7DNA8_ORYSJ (tr|Q7DNA8) OSJNBa0061C08.8 protein OS=Oryza sativa... 465 e-129
Q8SAU1_ORYSA (tr|Q8SAU1) Putative RNA polymerase alpha subunit O... 464 e-128
Q7G6A7_ORYSJ (tr|Q7G6A7) DNA-directed RNA polymerase alpha chain... 464 e-128
D8WMT8_9POAL (tr|D8WMT8) DNA-directed RNA polymerase subunit alp... 461 e-128
D8WMT4_9POAL (tr|D8WMT4) DNA-directed RNA polymerase subunit alp... 460 e-127
G1FBL4_9ARAE (tr|G1FBL4) RNA polymerase alpha subunit OS=Wolffia... 458 e-127
C6TK62_SOYBN (tr|C6TK62) Putative uncharacterized protein (Fragm... 454 e-126
A9QB58_CYCMI (tr|A9QB58) RNA polymerase alpha subunit (Fragment)... 452 e-125
C3W1N1_LAROX (tr|C3W1N1) DNA-directed RNA polymerase subunit alp... 446 e-123
C3W219_PINMO (tr|C3W219) DNA-directed RNA polymerase subunit alp... 444 e-122
C3W0T7_CEDDE (tr|C3W0T7) DNA-directed RNA polymerase subunit alp... 443 e-122
F0UWU2_PINLA (tr|F0UWU2) DNA-directed RNA polymerase subunit alp... 443 e-122
C3W281_PINPR (tr|C3W281) DNA-directed RNA polymerase subunit alp... 443 e-122
C3W0Z4_PINCE (tr|C3W0Z4) DNA-directed RNA polymerase subunit alp... 443 e-122
C3VZY0_PINAR (tr|C3VZY0) DNA-directed RNA polymerase subunit alp... 443 e-122
C3VY52_PINSI (tr|C3VY52) DNA-directed RNA polymerase subunit alp... 443 e-122
C3VYB7_9CONI (tr|C3VYB7) DNA-directed RNA polymerase subunit alp... 442 e-122
C3W2E4_PINPE (tr|C3W2E4) DNA-directed RNA polymerase subunit alp... 442 e-122
C3VZJ9_9CONI (tr|C3VZJ9) DNA-directed RNA polymerase subunit alp... 441 e-122
C3W1H9_PINLA (tr|C3W1H9) DNA-directed RNA polymerase subunit alp... 440 e-121
C3W1B5_9CONI (tr|C3W1B5) DNA-directed RNA polymerase subunit alp... 440 e-121
C3W0A1_9CONI (tr|C3W0A1) DNA-directed RNA polymerase subunit alp... 440 e-121
C3VYH6_PINST (tr|C3VYH6) DNA-directed RNA polymerase subunit alp... 440 e-121
Q2LIP2_9ORYZ (tr|Q2LIP2) RNA polymerase subunit (Fragment) OS=Or... 439 e-121
C1IXV8_PINGE (tr|C1IXV8) DNA-directed RNA polymerase subunit alp... 439 e-121
Q2LIN9_9ORYZ (tr|Q2LIN9) RNA polymerase subunit (Fragment) OS=Or... 438 e-121
B7ZIR8_KETDA (tr|B7ZIR8) DNA-directed RNA polymerase subunit alp... 438 e-121
E1CH55_LARDC (tr|E1CH55) DNA-directed RNA polymerase subunit alp... 438 e-121
F0UX83_9CONI (tr|F0UX83) DNA-directed RNA polymerase subunit alp... 438 e-121
C3VZ84_PINTO (tr|C3VZ84) DNA-directed RNA polymerase subunit alp... 438 e-121
C3VZ24_PINTO (tr|C3VZ24) DNA-directed RNA polymerase subunit alp... 438 e-121
Q2LIP3_9ORYZ (tr|Q2LIP3) RNA polymerase subunit (Fragment) OS=Or... 437 e-121
Q2LIP0_9ORYZ (tr|Q2LIP0) RNA polymerase subunit (Fragment) OS=Or... 437 e-121
D8WMT7_9POAL (tr|D8WMT7) RNA polymerase alpha subunit (Fragment)... 437 e-120
C3W041_PINAT (tr|C3W041) DNA-directed RNA polymerase subunit alp... 437 e-120
C3VXH3_PINPO (tr|C3VXH3) DNA-directed RNA polymerase subunit alp... 437 e-120
C3TSB3_PINKR (tr|C3TSB3) DNA-directed RNA polymerase subunit alp... 437 e-120
C3W0M8_9CONI (tr|C3W0M8) DNA-directed RNA polymerase subunit alp... 436 e-120
Q2LIP1_ORYPU (tr|Q2LIP1) RNA polymerase subunit (Fragment) OS=Or... 436 e-120
Q2LIP8_ORYSA (tr|Q2LIP8) RNA polymerase subunit (Fragment) OS=Or... 436 e-120
Q2LIP6_ORYNI (tr|Q2LIP6) RNA polymerase subunit (Fragment) OS=Or... 436 e-120
Q2LIP4_9ORYZ (tr|Q2LIP4) RNA polymerase subunit (Fragment) OS=Or... 436 e-120
C3VXT2_PINRE (tr|C3VXT2) DNA-directed RNA polymerase subunit alp... 436 e-120
Q2LIP7_ORYSA (tr|Q2LIP7) RNA polymerase subunit (Fragment) OS=Or... 435 e-120
C3VYV9_PINTH (tr|C3VYV9) DNA-directed RNA polymerase subunit alp... 435 e-120
C3W2L0_PINPS (tr|C3W2L0) DNA-directed RNA polymerase subunit alp... 435 e-120
C3VYP0_PINTA (tr|C3VYP0) DNA-directed RNA polymerase subunit alp... 435 e-120
F0UX12_9CONI (tr|F0UX12) DNA-directed RNA polymerase subunit alp... 435 e-120
C3VXZ8_PINRZ (tr|C3VXZ8) DNA-directed RNA polymerase subunit alp... 435 e-120
C3W0G5_PINBN (tr|C3W0G5) DNA-directed RNA polymerase subunit alp... 435 e-120
C3VZR7_9CONI (tr|C3VZR7) DNA-directed RNA polymerase subunit alp... 434 e-120
Q2LIP5_9ORYZ (tr|Q2LIP5) RNA polymerase subunit (Fragment) OS=Or... 434 e-119
C3W1V8_9CONI (tr|C3W1V8) DNA-directed RNA polymerase subunit alp... 434 e-119
C1IXP0_PINCO (tr|C1IXP0) DNA-directed RNA polymerase subunit alp... 433 e-119
E1CH08_9CONI (tr|E1CH08) DNA-directed RNA polymerase subunit alp... 433 e-119
C3VZD6_ABIFI (tr|C3VZD6) DNA-directed RNA polymerase subunit alp... 431 e-119
Q4FGA3_GINBI (tr|Q4FGA3) RNA polymerase alpha chain (Fragment) O... 430 e-118
E9NVC7_9ROSI (tr|E9NVC7) RNA polymerase alpha subunit OS=Erodium... 429 e-118
E1CHA2_9CONI (tr|E1CHA2) DNA-directed RNA polymerase subunit alp... 426 e-117
B8Y305_FESAR (tr|B8Y305) RNA polymerase alpha subunit OS=Festuca... 426 e-117
C1IXH8_PICSI (tr|C1IXH8) DNA-directed RNA polymerase subunit alp... 423 e-116
B7T413_SARVA (tr|B7T413) DNA-directed RNA polymerase subunit alp... 421 e-116
B7T379_9ROSI (tr|B7T379) DNA-directed RNA polymerase subunit alp... 421 e-116
B7T309_EROTE (tr|B7T309) RNA polymerase alpha subunit OS=Erodium... 420 e-115
B7T3U2_9ROSI (tr|B7T3U2) DNA-directed RNA polymerase subunit alp... 417 e-114
E1CGP9_9CONI (tr|E1CGP9) DNA-directed RNA polymerase subunit alp... 413 e-113
B7T3M1_9ROSI (tr|B7T3M1) RNA polymerase alpha subunit OS=Geraniu... 407 e-111
B7T2T8_9ROSI (tr|B7T2T8) RNA polymerase alpha subunit OS=Erodium... 406 e-111
C3W150_PINLE (tr|C3W150) DNA-directed RNA polymerase subunit alp... 401 e-110
Q5EFY8_9BRYO (tr|Q5EFY8) DNA-directed RNA polymerase subunit alp... 401 e-109
B7T3F0_9ROSI (tr|B7T3F0) RNA polymerase alpha subunit OS=Geraniu... 399 e-109
Q5EFY2_9BRYO (tr|Q5EFY2) DNA-directed RNA polymerase subunit alp... 388 e-106
Q5EG69_9BRYO (tr|Q5EG69) DNA-directed RNA polymerase subunit alp... 387 e-105
Q5EFZ1_9BRYO (tr|Q5EFZ1) DNA-directed RNA polymerase subunit alp... 386 e-105
Q5EFY4_9BRYO (tr|Q5EFY4) DNA-directed RNA polymerase subunit alp... 383 e-104
Q60F85_9BRYO (tr|Q60F85) DNA-directed RNA polymerase subunit alp... 381 e-104
D3WCW2_RHOSS (tr|D3WCW2) RNA polymerase alpha subunit protein OS... 368 1e-99
F5GV34_9MARC (tr|F5GV34) DNA-directed RNA polymerase subunit alp... 365 8e-99
E3T2H9_9TRAC (tr|E3T2H9) DNA-directed RNA polymerase subunit alp... 360 2e-97
B1VKC7_CRYJA (tr|B1VKC7) DNA-directed RNA polymerase subunit alp... 355 6e-96
B0YPQ7_ANEMR (tr|B0YPQ7) DNA-directed RNA polymerase subunit alp... 350 3e-94
E3T2R4_EQUAR (tr|E3T2R4) DNA-directed RNA polymerase subunit alp... 332 7e-89
C5HY86_9MONI (tr|C5HY86) DNA-directed RNA polymerase subunit alp... 330 3e-88
E2J483_9MONI (tr|E2J483) DNA-directed RNA polymerase subunit alp... 320 3e-85
B7ZI83_GNEPA (tr|B7ZI83) RNA polymerase alpha chain OS=Gnetum pa... 310 3e-82
A6BM49_BRANA (tr|A6BM49) RNA polymerase alpha subunit OS=Brassic... 310 3e-82
E2IH43_PTEAA (tr|E2IH43) DNA-directed RNA polymerase subunit alp... 308 1e-81
B2Y1Z1_WELMI (tr|B2Y1Z1) RNA polymerase alpha chain OS=Welwitsch... 260 2e-67
A9CP51_9BRYO (tr|A9CP51) DNA-directed RNA polymerase alpha chain... 255 7e-66
A9SHY0_PHYPA (tr|A9SHY0) Predicted protein OS=Physcomitrella pat... 255 1e-65
B7ZII6_EPHEU (tr|B7ZII6) RNA polymerase alpha chain OS=Ephedra e... 253 3e-65
C7B2H8_SELML (tr|C7B2H8) RNA polymerase alpha chain OS=Selaginel... 250 3e-64
Q5EFY5_9BRYO (tr|Q5EFY5) RNA polymerase alpha subunit (Fragment)... 241 9e-62
D8G2V3_9CYAN (tr|D8G2V3) DNA-directed RNA polymerase subunit alp... 227 3e-57
D4TV59_9NOST (tr|D4TV59) DNA-directed RNA polymerase subunit alp... 222 9e-56
D4TGB6_9NOST (tr|D4TGB6) DNA-directed RNA polymerase subunit alp... 221 2e-55
F5UMD3_9CYAN (tr|F5UMD3) DNA-directed RNA polymerase subunit alp... 218 1e-54
A0YJS0_LYNSP (tr|A0YJS0) DNA-directed RNA polymerase subunit alp... 216 6e-54
A3IQ28_9CHRO (tr|A3IQ28) DNA-directed RNA polymerase subunit alp... 214 2e-53
C7QS38_CYAP0 (tr|C7QS38) DNA-directed RNA polymerase subunit alp... 214 2e-53
B7K224_CYAP8 (tr|B7K224) DNA-directed RNA polymerase subunit alp... 214 2e-53
A0ZG51_NODSP (tr|A0ZG51) DNA-directed RNA polymerase subunit alp... 214 2e-53
B1WQT5_CYAA5 (tr|B1WQT5) DNA-directed RNA polymerase subunit alp... 214 2e-53
B4VPM9_9CYAN (tr|B4VPM9) DNA-directed RNA polymerase subunit alp... 214 2e-53
D7DYZ7_NOSA0 (tr|D7DYZ7) DNA-directed RNA polymerase subunit alp... 213 3e-53
D3EQH5_UCYNA (tr|D3EQH5) DNA-directed RNA polymerase subunit alp... 213 4e-53
B2ITN1_NOSP7 (tr|B2ITN1) DNA-directed RNA polymerase subunit alp... 211 1e-52
E0UIF9_CYAP2 (tr|E0UIF9) DNA-directed RNA polymerase subunit alp... 208 1e-51
Q4C148_CROWT (tr|Q4C148) DNA-directed RNA polymerase subunit alp... 208 1e-51
B0JY38_MICAN (tr|B0JY38) DNA-directed RNA polymerase subunit alp... 207 2e-51
B1XJI4_SYNP2 (tr|B1XJI4) DNA-directed RNA polymerase subunit alp... 207 2e-51
B7KI11_CYAP7 (tr|B7KI11) DNA-directed RNA polymerase subunit alp... 207 3e-51
A8YCU3_MICAE (tr|A8YCU3) DNA-directed RNA polymerase subunit alp... 206 5e-51
D8WMR9_9POAL (tr|D8WMR9) RNA polymerase alpha subunit (Fragment)... 205 1e-50
B5W6Q8_SPIMA (tr|B5W6Q8) DNA-directed RNA polymerase subunit alp... 203 3e-50
F7UMY7_SYNY3 (tr|F7UMY7) DNA-directed RNA polymerase subunit alp... 203 4e-50
B0C430_ACAM1 (tr|B0C430) DNA-directed RNA polymerase subunit alp... 203 4e-50
F4Y387_9CYAN (tr|F4Y387) DNA-directed RNA polymerase subunit alp... 202 7e-50
D4ZPI5_SPIPL (tr|D4ZPI5) DNA-directed RNA polymerase subunit alp... 201 1e-49
B4WHD8_9SYNE (tr|B4WHD8) DNA-directed RNA polymerase subunit alp... 201 1e-49
B8HMS8_CYAP4 (tr|B8HMS8) DNA-directed RNA polymerase subunit alp... 198 1e-48
D2ISB5_9CRYP (tr|D2ISB5) DNA-directed RNA polymerase subunit alp... 197 2e-48
Q6J226_9STRA (tr|Q6J226) RNA polymerase alpha subunit (Fragment)... 184 2e-44
Q2WGF4_SELUN (tr|Q2WGF4) RNA polymerase alpha chain like (Fragme... 182 7e-44
E7BWN9_THAOC (tr|E7BWN9) DNA-directed RNA polymerase subunit alp... 181 1e-43
Q2KKK3_9BRYO (tr|Q2KKK3) RNA polymerase alpha subunit (Fragment)... 179 6e-43
Q6J225_9STRA (tr|Q6J225) RNA polymerase alpha subunit (Fragment)... 178 1e-42
B8E1G0_DICTD (tr|B8E1G0) DNA-directed RNA polymerase subunit alp... 178 1e-42
B6G0E8_9CLOT (tr|B6G0E8) DNA-directed RNA polymerase subunit alp... 176 7e-42
Q6J224_9STRA (tr|Q6J224) RNA polymerase alpha subunit (Fragment)... 175 8e-42
Q6J222_9STRA (tr|Q6J222) RNA polymerase alpha subunit (Fragment)... 175 8e-42
D4MNC6_9FIRM (tr|D4MNC6) DNA-directed RNA polymerase subunit alp... 175 1e-41
D4JX84_9FIRM (tr|D4JX84) DNA-directed RNA polymerase subunit alp... 175 1e-41
B0MKM8_9FIRM (tr|B0MKM8) DNA-directed RNA polymerase subunit alp... 175 1e-41
F3Y7D3_9STRA (tr|F3Y7D3) DNA-directed RNA polymerase subunit alp... 174 2e-41
D7PJ85_9DINO (tr|D7PJ85) DNA-directed RNA polymerase subunit alp... 174 2e-41
A3YUJ6_9SYNE (tr|A3YUJ6) DNA-directed RNA polymerase subunit alp... 174 2e-41
B5YDX0_DICT6 (tr|B5YDX0) DNA-directed RNA polymerase subunit alp... 174 3e-41
D7PJJ9_9DINO (tr|D7PJJ9) DNA-directed RNA polymerase subunit alp... 173 4e-41
B5IPS6_9CHRO (tr|B5IPS6) DNA-directed RNA polymerase subunit alp... 173 5e-41
B1CA43_9FIRM (tr|B1CA43) DNA-directed RNA polymerase subunit alp... 172 1e-40
G1C6L9_9LILI (tr|G1C6L9) RNA polymerase A alpha chain (Fragment)... 171 1e-40
E6SKX3_THEM7 (tr|E6SKX3) DNA-directed RNA polymerase subunit alp... 171 2e-40
C9YHQ5_CLODR (tr|C9YHQ5) DNA-directed RNA polymerase subunit alp... 170 3e-40
C9XIL9_CLODC (tr|C9XIL9) DNA-directed RNA polymerase subunit alp... 170 3e-40
A4CSN9_SYNPV (tr|A4CSN9) DNA-directed RNA polymerase subunit alp... 170 4e-40
C7BED9_9CHLO (tr|C7BED9) DNA-directed RNA polymerase subunit alp... 169 4e-40
F2MKL5_LACCD (tr|F2MKL5) DNA-directed RNA polymerase subunit alp... 169 5e-40
F2MC23_LACCC (tr|F2MC23) DNA-directed RNA polymerase subunit alp... 169 5e-40
D8GCI9_LACCZ (tr|D8GCI9) DNA-directed RNA polymerase subunit alp... 169 5e-40
C5F9J7_LACPA (tr|C5F9J7) DNA-directed RNA polymerase subunit alp... 169 5e-40
C2FCG3_LACPA (tr|C2FCG3) DNA-directed RNA polymerase subunit alp... 169 5e-40
C7TM68_LACRL (tr|C7TM68) DNA-directed RNA polymerase subunit alp... 169 6e-40
C7T719_LACRG (tr|C7T719) DNA-directed RNA polymerase subunit alp... 169 6e-40
C2JYK5_LACRH (tr|C2JYK5) DNA-directed RNA polymerase subunit alp... 169 6e-40
B5QPU1_LACRH (tr|B5QPU1) DNA-directed RNA polymerase subunit alp... 169 6e-40
D8IIP7_LACFC (tr|D8IIP7) DNA-directed RNA polymerase subunit alp... 169 7e-40
B2GDU3_LACF3 (tr|B2GDU3) DNA-directed RNA polymerase subunit alp... 169 7e-40
D0DT00_LACFE (tr|D0DT00) DNA-directed RNA polymerase subunit alp... 169 7e-40
C0WZT2_LACFE (tr|C0WZT2) DNA-directed RNA polymerase subunit alp... 169 7e-40
F7NF69_9FIRM (tr|F7NF69) DNA-directed RNA polymerase subunit alp... 169 7e-40
G1C6L7_9LILI (tr|G1C6L7) RNA polymerase A alpha chain (Fragment)... 169 9e-40
G1C6M1_9LILI (tr|G1C6M1) RNA polymerase A alpha chain (Fragment)... 168 1e-39
F4A8Y6_CLOBO (tr|F4A8Y6) DNA-directed RNA polymerase subunit alp... 168 1e-39
B0A6D6_9CLOT (tr|B0A6D6) DNA-directed RNA polymerase subunit alp... 167 2e-39
F7MKV4_CLOBO (tr|F7MKV4) DNA-directed RNA polymerase subunit alp... 167 3e-39
C5VRA2_CLOBO (tr|C5VRA2) DNA-directed RNA polymerase subunit alp... 167 3e-39
C0E8L5_9CLOT (tr|C0E8L5) DNA-directed RNA polymerase subunit alp... 167 3e-39
E4M533_9FIRM (tr|E4M533) DNA-directed RNA polymerase subunit alp... 167 3e-39
Q6J227_9STRA (tr|Q6J227) RNA polymerase alpha subunit (Fragment)... 167 3e-39
D5Q1K2_CLODI (tr|D5Q1K2) DNA-directed RNA polymerase subunit alp... 167 3e-39
Q6J221_9STRA (tr|Q6J221) RNA polymerase alpha subunit (Fragment)... 166 4e-39
F2I816_AERUA (tr|F2I816) DNA-directed RNA polymerase subunit alp... 166 4e-39
C9KPD4_9FIRM (tr|C9KPD4) DNA-directed RNA polymerase subunit alp... 166 4e-39
F1DTJ5_9LACO (tr|F1DTJ5) DNA-directed RNA polymerase subunit alp... 166 8e-39
A6NXF9_9FIRM (tr|A6NXF9) DNA-directed RNA polymerase subunit alp... 166 8e-39
E0QLM9_9FIRM (tr|E0QLM9) DNA-directed RNA polymerase subunit alp... 165 9e-39
B1BDF7_CLOBO (tr|B1BDF7) DNA-directed RNA polymerase subunit alp... 165 1e-38
F4AED9_LACJH (tr|F4AED9) DNA-directed RNA polymerase subunit alp... 165 1e-38
C2E340_LACJH (tr|C2E340) DNA-directed RNA polymerase subunit alp... 165 1e-38
D7V597_9LACO (tr|D7V597) DNA-directed RNA polymerase subunit alp... 165 1e-38
E5WBS6_9BACI (tr|E5WBS6) DNA-directed RNA polymerase subunit alp... 164 2e-38
D0R1M3_LACJF (tr|D0R1M3) DNA-directed RNA polymerase subunit alp... 164 2e-38
D9RZP0_THEOJ (tr|D9RZP0) DNA-directed RNA polymerase subunit alp... 164 2e-38
E3R7T4_9LACO (tr|E3R7T4) DNA-directed RNA polymerase subunit alp... 164 2e-38
D1YLD3_9LACO (tr|D1YLD3) DNA-directed RNA polymerase subunit alp... 164 2e-38
C4VSA8_9LACO (tr|C4VSA8) DNA-directed RNA polymerase subunit alp... 164 2e-38
B1YGX7_EXIS2 (tr|B1YGX7) DNA-directed RNA polymerase subunit alp... 164 2e-38
E4SWI0_LACDN (tr|E4SWI0) DNA-directed RNA polymerase subunit alp... 164 2e-38
C4KZL9_EXISA (tr|C4KZL9) DNA-directed RNA polymerase subunit alp... 164 3e-38
F4XGU6_9FIRM (tr|F4XGU6) DNA-directed RNA polymerase subunit alp... 164 3e-38
Q6J223_CYLFU (tr|Q6J223) RNA polymerase alpha subunit (Fragment)... 163 3e-38
F0PR53_BACT0 (tr|F0PR53) DNA-directed RNA polymerase subunit alp... 163 3e-38
D8GXK1_BACAI (tr|D8GXK1) DNA-directed RNA polymerase subunit alp... 163 3e-38
D5TKE0_BACT1 (tr|D5TKE0) DNA-directed RNA polymerase subunit alp... 163 3e-38
C3P9T2_BACAA (tr|C3P9T2) DNA-directed RNA polymerase subunit alp... 163 3e-38
C3LJX1_BACAC (tr|C3LJX1) DNA-directed RNA polymerase subunit alp... 163 3e-38
C1ET66_BACC3 (tr|C1ET66) DNA-directed RNA polymerase subunit alp... 163 3e-38
B9IZM1_BACCQ (tr|B9IZM1) DNA-directed RNA polymerase subunit alp... 163 3e-38
B7JKE7_BACC0 (tr|B7JKE7) DNA-directed RNA polymerase subunit alp... 163 3e-38
B7IT46_BACC2 (tr|B7IT46) DNA-directed RNA polymerase subunit alp... 163 3e-38
B7HQX1_BACC7 (tr|B7HQX1) DNA-directed RNA polymerase subunit alp... 163 3e-38
B7HJ75_BACC4 (tr|B7HJ75) DNA-directed RNA polymerase subunit alp... 163 3e-38
Q4MH26_BACCE (tr|Q4MH26) DNA-directed RNA polymerase subunit alp... 163 3e-38
F2H0Q7_BACTU (tr|F2H0Q7) DNA-directed RNA polymerase subunit alp... 163 3e-38
D7WLA2_BACCE (tr|D7WLA2) DNA-directed RNA polymerase subunit alp... 163 3e-38
C3IDL4_BACTU (tr|C3IDL4) DNA-directed RNA polymerase subunit alp... 163 3e-38
C3HUH6_BACTU (tr|C3HUH6) DNA-directed RNA polymerase subunit alp... 163 3e-38
C3HCI1_BACTU (tr|C3HCI1) DNA-directed RNA polymerase subunit alp... 163 3e-38
C3GVB1_BACTU (tr|C3GVB1) DNA-directed RNA polymerase subunit alp... 163 3e-38
C3GD09_BACTU (tr|C3GD09) DNA-directed RNA polymerase subunit alp... 163 3e-38
C3FX69_BACTU (tr|C3FX69) DNA-directed RNA polymerase subunit alp... 163 3e-38
C3FEC1_BACTB (tr|C3FEC1) DNA-directed RNA polymerase subunit alp... 163 3e-38
C3EVS9_BACTU (tr|C3EVS9) DNA-directed RNA polymerase subunit alp... 163 3e-38
C3EEX5_BACTK (tr|C3EEX5) DNA-directed RNA polymerase subunit alp... 163 3e-38
C3DXP8_BACTU (tr|C3DXP8) DNA-directed RNA polymerase subunit alp... 163 3e-38
C3DDW7_BACTS (tr|C3DDW7) DNA-directed RNA polymerase subunit alp... 163 3e-38
C3CVU0_BACTU (tr|C3CVU0) DNA-directed RNA polymerase subunit alp... 163 3e-38
C3CCU2_BACTU (tr|C3CCU2) DNA-directed RNA polymerase subunit alp... 163 3e-38
C3BWF9_BACTU (tr|C3BWF9) DNA-directed RNA polymerase subunit alp... 163 3e-38
C2Y4S9_BACCE (tr|C2Y4S9) DNA-directed RNA polymerase subunit alp... 163 3e-38
C2X606_BACCE (tr|C2X606) DNA-directed RNA polymerase subunit alp... 163 3e-38
C2WXW3_BACCE (tr|C2WXW3) DNA-directed RNA polymerase subunit alp... 163 3e-38
C2VMU3_BACCE (tr|C2VMU3) DNA-directed RNA polymerase subunit alp... 163 3e-38
C2V618_BACCE (tr|C2V618) DNA-directed RNA polymerase subunit alp... 163 3e-38
C2UPP8_BACCE (tr|C2UPP8) DNA-directed RNA polymerase subunit alp... 163 3e-38
C2U852_BACCE (tr|C2U852) DNA-directed RNA polymerase subunit alp... 163 3e-38
C2TRI9_BACCE (tr|C2TRI9) DNA-directed RNA polymerase subunit alp... 163 3e-38
C2TAG1_BACCE (tr|C2TAG1) DNA-directed RNA polymerase subunit alp... 163 3e-38
C2SV40_BACCE (tr|C2SV40) DNA-directed RNA polymerase subunit alp... 163 3e-38
C2RXR6_BACCE (tr|C2RXR6) DNA-directed RNA polymerase subunit alp... 163 3e-38
C2RH95_BACCE (tr|C2RH95) DNA-directed RNA polymerase subunit alp... 163 3e-38
C2R2A1_BACCE (tr|C2R2A1) DNA-directed RNA polymerase subunit alp... 163 3e-38
C2QM61_BACCE (tr|C2QM61) DNA-directed RNA polymerase subunit alp... 163 3e-38
C2Q675_BACCE (tr|C2Q675) DNA-directed RNA polymerase subunit alp... 163 3e-38
C2NT14_BACCE (tr|C2NT14) DNA-directed RNA polymerase subunit alp... 163 3e-38
C2NBS7_BACCE (tr|C2NBS7) DNA-directed RNA polymerase subunit alp... 163 3e-38
C2MV17_BACCE (tr|C2MV17) DNA-directed RNA polymerase subunit alp... 163 3e-38
C2MEY4_BACCE (tr|C2MEY4) DNA-directed RNA polymerase subunit alp... 163 3e-38
B5UVN1_BACCE (tr|B5UVN1) DNA-directed RNA polymerase subunit alp... 163 3e-38
B3ZD75_BACCE (tr|B3ZD75) DNA-directed RNA polymerase subunit alp... 163 3e-38
B3J7E5_BACAN (tr|B3J7E5) DNA-directed RNA polymerase subunit alp... 163 3e-38
B1UY61_BACAN (tr|B1UY61) DNA-directed RNA polymerase subunit alp... 163 3e-38
B1GQL1_BACAN (tr|B1GQL1) DNA-directed RNA polymerase subunit alp... 163 3e-38
B0QAF6_BACAN (tr|B0QAF6) DNA-directed RNA polymerase subunit alp... 163 3e-38
D0CKL7_9SYNE (tr|D0CKL7) DNA-directed RNA polymerase subunit alp... 163 3e-38
Q05QD6_9SYNE (tr|Q05QD6) DNA-directed RNA polymerase subunit alp... 163 3e-38
A3Z8V2_9SYNE (tr|A3Z8V2) DNA-directed RNA polymerase subunit alp... 163 3e-38
F9N6G6_9FIRM (tr|F9N6G6) DNA-directed RNA polymerase, alpha subu... 163 4e-38
D6S466_9LACO (tr|D6S466) DNA-directed RNA polymerase subunit alp... 163 4e-38
D1WCW2_9LACO (tr|D1WCW2) DNA-directed RNA polymerase subunit alp... 163 4e-38
D0DYL0_9LACO (tr|D0DYL0) DNA-directed RNA polymerase subunit alp... 163 4e-38
C7Y1L1_9LACO (tr|C7Y1L1) DNA-directed RNA polymerase subunit alp... 163 4e-38
E3GGZ5_EUBLK (tr|E3GGZ5) DNA-directed RNA polymerase subunit alp... 163 4e-38
A9BCM4_PROM4 (tr|A9BCM4) DNA-directed RNA polymerase subunit alp... 163 4e-38
C2ZIM1_BACCE (tr|C2ZIM1) DNA-directed RNA polymerase subunit alp... 163 5e-38
C2YKU0_BACCE (tr|C2YKU0) DNA-directed RNA polymerase subunit alp... 163 5e-38
C2P956_BACCE (tr|C2P956) DNA-directed RNA polymerase subunit alp... 163 5e-38
Q3XYW3_ENTFC (tr|Q3XYW3) DNA-directed RNA polymerase subunit alp... 163 5e-38
E4JDN3_ENTFC (tr|E4JDN3) DNA-directed RNA polymerase subunit alp... 163 5e-38
E4J4D7_ENTFC (tr|E4J4D7) DNA-directed RNA polymerase subunit alp... 163 5e-38
E4IW05_ENTFC (tr|E4IW05) DNA-directed RNA polymerase subunit alp... 163 5e-38
E4INM3_ENTFC (tr|E4INM3) DNA-directed RNA polymerase subunit alp... 163 5e-38
E4IIQ2_ENTFC (tr|E4IIQ2) DNA-directed RNA polymerase subunit alp... 163 5e-38
E4I582_ENTFC (tr|E4I582) DNA-directed RNA polymerase subunit alp... 163 5e-38
D4W0J9_ENTFC (tr|D4W0J9) DNA-directed RNA polymerase subunit alp... 163 5e-38
D4SLD7_ENTFC (tr|D4SLD7) DNA-directed RNA polymerase subunit alp... 163 5e-38
D4RNZ2_ENTFC (tr|D4RNZ2) DNA-directed RNA polymerase subunit alp... 163 5e-38
D4RH20_ENTFC (tr|D4RH20) DNA-directed RNA polymerase subunit alp... 163 5e-38
D4R9I8_ENTFC (tr|D4R9I8) DNA-directed RNA polymerase subunit alp... 163 5e-38
D4R2A7_ENTFC (tr|D4R2A7) DNA-directed RNA polymerase subunit alp... 163 5e-38
D4QS07_ENTFC (tr|D4QS07) DNA-directed RNA polymerase subunit alp... 163 5e-38
D4QI86_ENTFC (tr|D4QI86) DNA-directed RNA polymerase subunit alp... 163 5e-38
D3LDX6_ENTFC (tr|D3LDX6) DNA-directed RNA polymerase subunit alp... 163 5e-38
D0AK24_ENTFC (tr|D0AK24) DNA-directed RNA polymerase subunit alp... 163 5e-38
D0ACZ5_ENTFC (tr|D0ACZ5) DNA-directed RNA polymerase subunit alp... 163 5e-38
C9CAP1_ENTFC (tr|C9CAP1) DNA-directed RNA polymerase subunit alp... 163 5e-38
C9C431_ENTFC (tr|C9C431) DNA-directed RNA polymerase subunit alp... 163 5e-38
C9BUV7_ENTFC (tr|C9BUV7) DNA-directed RNA polymerase subunit alp... 163 5e-38
C9BKB6_ENTFC (tr|C9BKB6) DNA-directed RNA polymerase subunit alp... 163 5e-38
C9BFA5_ENTFC (tr|C9BFA5) DNA-directed RNA polymerase subunit alp... 163 5e-38
C9B8L8_ENTFC (tr|C9B8L8) DNA-directed RNA polymerase subunit alp... 163 5e-38
C9AQQ6_ENTFC (tr|C9AQQ6) DNA-directed RNA polymerase subunit alp... 163 5e-38
C9AH81_ENTFC (tr|C9AH81) DNA-directed RNA polymerase subunit alp... 163 5e-38
C2H905_ENTFC (tr|C2H905) DNA-directed RNA polymerase subunit alp... 163 5e-38
D7CJJ4_SYNLT (tr|D7CJJ4) DNA-directed RNA polymerase subunit alp... 162 5e-38
D1WAH4_9LACO (tr|D1WAH4) DNA-directed RNA polymerase subunit alp... 162 6e-38
>C0LEA6_9ROSI (tr|C0LEA6) DNA-directed RNA polymerase subunit alpha OS=Jatropha
curcas GN=rpoA PE=3 SV=1
Length = 339
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/339 (100%), Positives = 339/339 (100%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE
Sbjct: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN
Sbjct: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI
Sbjct: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
>F2X0E8_HEVBR (tr|F2X0E8) DNA-directed RNA polymerase subunit alpha OS=Hevea
brasiliensis GN=rpoA PE=3 SV=1
Length = 341
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/341 (94%), Positives = 330/341 (96%), Gaps = 2/341 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHEFSTIAGIQESIHEILMNLK +VL+SNLYGTC+ASI V+GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKEIVLRSNLYGTCNASICVEGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQ--DGSYPIDAVFMP 178
IILPPFVEIIDNTQHIASLTE+IDLCIGLQIERNRGYRI PTNNFQ DGSY IDAVFMP
Sbjct: 121 IILPPFVEIIDNTQHIASLTEAIDLCIGLQIERNRGYRINPTNNFQVQDGSYSIDAVFMP 180
Query: 179 VRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLH 238
VRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID FIPFLHAEEENLH
Sbjct: 181 VRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDFFIPFLHAEEENLH 240
Query: 239 LEINQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDL 298
LE NQHKVTLPLFTFH RLTKLRKN+KEIALKYIFIDQSELTPK YNCLKRSNIHTLSDL
Sbjct: 241 LEKNQHKVTLPLFTFHDRLTKLRKNKKEIALKYIFIDQSELTPKIYNCLKRSNIHTLSDL 300
Query: 299 LNKSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
L KSQEDLMKIE+FRIDDVKHILGILEIEKHFAIDLPKNKI
Sbjct: 301 LKKSQEDLMKIEHFRIDDVKHILGILEIEKHFAIDLPKNKI 341
>B1NWI2_MANES (tr|B1NWI2) DNA-directed RNA polymerase subunit alpha OS=Manihot
esculenta GN=rpoA PE=3 SV=1
Length = 343
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/343 (93%), Positives = 330/343 (96%), Gaps = 4/343 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREK+TISTRTLQWKC+ESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKITISTRTLQWKCIESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHEFSTIAGIQESIHEILMNLK +VL+SNLYGTCDASI VKGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKEIVLRSNLYGTCDASICVKGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNF--QDGSYPIDAVFMP 178
IILPPFVEIIDNTQHIASLT++IDLCIGLQIERNRGYRIKPTNNF QDGSY IDAVFMP
Sbjct: 121 IILPPFVEIIDNTQHIASLTKAIDLCIGLQIERNRGYRIKPTNNFQVQDGSYSIDAVFMP 180
Query: 179 VRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLH 238
VRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID FIPFLHAEEENLH
Sbjct: 181 VRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDFFIPFLHAEEENLH 240
Query: 239 LEI--NQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLS 296
LEI NQHKVTLPLF FH +LTKLRKN+KEI LKYIFIDQSELTPK YNCLKRSNIHTLS
Sbjct: 241 LEIEKNQHKVTLPLFCFHDKLTKLRKNKKEIVLKYIFIDQSELTPKIYNCLKRSNIHTLS 300
Query: 297 DLLNKSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
DLLNKSQEDLMKIE+FRIDDVKHILGILEIEKHF IDLPKNKI
Sbjct: 301 DLLNKSQEDLMKIEHFRIDDVKHILGILEIEKHFTIDLPKNKI 343
>G1D790_RICCO (tr|G1D790) RNA polymerase alpha subunit OS=Ricinus communis
GN=rpoA PE=4 SV=1
Length = 332
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/332 (93%), Positives = 321/332 (96%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+REKVTISTRTLQWKCVESRTDNKRL+YGRFILSPLMKGQADTIGIA RRALLGEIEGT
Sbjct: 1 MIREKVTISTRTLQWKCVESRTDNKRLFYGRFILSPLMKGQADTIGIATRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHEFSTIAGIQESIHEILMNLK +VL+SNLYGTCDASI VKGPGY+TAQD
Sbjct: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKEIVLRSNLYGTCDASICVKGPGYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPPFVEIIDNTQHIASLTE IDLCIGLQIERNRGYRIKPTNNF +GSYPIDAVFMPVR
Sbjct: 121 IILPPFVEIIDNTQHIASLTEPIDLCIGLQIERNRGYRIKPTNNFHEGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEN HLE
Sbjct: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENFHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQHKVTLPLFTF+ RLTKLRKNQ EI LKY+FIDQSELTPK YNCLKRSNIHTLSDLLN
Sbjct: 241 KNQHKVTLPLFTFYDRLTKLRKNQNEITLKYVFIDQSELTPKIYNCLKRSNIHTLSDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAI 332
KSQEDLMKIE+FRIDDVKHILGILEIEK+FAI
Sbjct: 301 KSQEDLMKIEHFRIDDVKHILGILEIEKNFAI 332
>D3WD99_9MAGN (tr|D3WD99) DNA-directed RNA polymerase subunit alpha
OS=Berberidopsis corallina GN=rpoA PE=3 SV=1
Length = 337
Score = 628 bits (1619), Expect = e-178, Method: Compositional matrix adjust.
Identities = 303/338 (89%), Positives = 316/338 (93%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVT+STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+STI GIQES+HEILMNLK +VL+SNLYGTCDASI V+GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP VEI+DNTQHIASLTE IDLCIGLQIERNRGYRIK NNFQDGSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDNTQHIASLTEPIDLCIGLQIERNRGYRIKTLNNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQHK T PLFTFH RL KLRKN+KEIALKYIFIDQ EL P+ YNCLKRSNIHTLSDLLN
Sbjct: 241 DNQHKATFPLFTFHDRLAKLRKNKKEIALKYIFIDQLELPPRIYNCLKRSNIHTLSDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
SQEDLMKIE+FRI+DVK ILGIL EKHF IDLPKNK
Sbjct: 301 NSQEDLMKIEHFRIEDVKQILGIL--EKHFTIDLPKNK 336
>D3WEF8_HEUSA (tr|D3WEF8) DNA-directed RNA polymerase subunit alpha OS=Heuchera
sanguinea GN=rpoA PE=3 SV=1
Length = 337
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 300/338 (88%), Positives = 314/338 (92%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVT+STRTL+WKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLEWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+STI GIQES+HEILMNLK VVL+SNLYGT +ASI V GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGTRNASICVSGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP VEI+DNTQHIASLTE IDLCIGLQIE+NRGYRIK NNFQDGSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDNTQHIASLTEPIDLCIGLQIEKNRGYRIKTPNNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQHKVTLPLFTFH RL KLRKN+KEIALKYIFIDQSEL P+ Y CLKRSNIHTL DLLN
Sbjct: 241 DNQHKVTLPLFTFHDRLAKLRKNKKEIALKYIFIDQSELPPRIYTCLKRSNIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
SQEDLMKIE+FRI+DVK ILG L EKHF IDLPKNK
Sbjct: 301 NSQEDLMKIEHFRIEDVKEILGFL--EKHFEIDLPKNK 336
>D3WDN3_CORFO (tr|D3WDN3) DNA-directed RNA polymerase subunit alpha OS=Cornus
florida GN=rpoA PE=3 SV=1
Length = 337
Score = 607 bits (1565), Expect = e-172, Method: Compositional matrix adjust.
Identities = 291/338 (86%), Positives = 313/338 (92%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVT+STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKI HE+STI GIQES+HEILMNLK +VL+S LYGTCDASI VKGPGYVTAQD
Sbjct: 61 CITRAKSEKIQHEYSTIVGIQESVHEILMNLKEIVLRSTLYGTCDASICVKGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP+VEI+DNTQ+IASLTE IDLCIGLQIERNRGYRIKP NNFQDG+YPIDAVFMPVR
Sbjct: 121 IISPPYVEIVDNTQYIASLTEPIDLCIGLQIERNRGYRIKPPNNFQDGNYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EEENLHLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQHKVTLP FTFH +L KLRKN+K+IA KYIFIDQSEL+P+ YNCLKRSNI+TL DLLN
Sbjct: 241 DNQHKVTLPTFTFHDKLAKLRKNKKKIAFKYIFIDQSELSPRIYNCLKRSNIYTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
SQEDLMK+++FRI+DVK IL IL EK FA DL KN+
Sbjct: 301 NSQEDLMKMKDFRIEDVKEILDIL--EKRFATDLLKNR 336
>D3WBK6_9AQUA (tr|D3WBK6) DNA-directed RNA polymerase subunit alpha OS=Ilex
cornuta GN=rpoA PE=3 SV=1
Length = 337
Score = 600 bits (1548), Expect = e-170, Method: Compositional matrix adjust.
Identities = 290/338 (85%), Positives = 309/338 (91%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVT+STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK EKIPHE+STI GIQES+HEILMNLK +VL+SNLYGTCDASI V+GPGYVT QD
Sbjct: 61 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTTQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP+VEI+DNTQHIASLTE IDLCIGLQIERNRGY IK NNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKTPNNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EEENLHLE
Sbjct: 181 NANHSIHSYRNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQH + LP F FH +L KLRKN+K+IALK IFIDQ EL P+ YNCLKRSNI+TL DLLN
Sbjct: 241 DNQHTIPLPPFNFHDKLAKLRKNKKKIALKSIFIDQLELPPRIYNCLKRSNIYTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
QEDLMKIE+FRI+DVK ILG+L EKHFAIDLPKNK
Sbjct: 301 NVQEDLMKIEHFRIEDVKQILGVL--EKHFAIDLPKNK 336
>G2I924_PYRPY (tr|G2I924) RNA polymerase alpha subunit OS=Pyrus pyrifolia GN=rpoA
PE=4 SV=1
Length = 331
Score = 598 bits (1541), Expect = e-169, Method: Compositional matrix adjust.
Identities = 288/330 (87%), Positives = 309/330 (93%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVT+STRTLQWKCVESR D+KRLYYGRFIL+PLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CIT AKSEKIPHE+STI GIQES+HEILMNLK +VLKSNLYGT +ASI VKGPGYVTAQD
Sbjct: 61 CITCAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLKSNLYGTRNASICVKGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+DNTQ+IA+LTE I+LCI LQIERNRGYRIK NNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPSVEIVDNTQYIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLI+LFIPFLHAEEENLHLE
Sbjct: 181 NANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEENLHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQHKVTLPLFT+H RL K RKN+KEIALKYIFIDQSEL P+ YNCLKRSNIHTL DLLN
Sbjct: 241 NNQHKVTLPLFTYHDRLAKQRKNKKEIALKYIFIDQSELLPRVYNCLKRSNIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHF 330
SQEDLMK+++FRI+DVKHIL ILEI+KHF
Sbjct: 301 NSQEDLMKMKHFRIEDVKHILNILEIKKHF 330
>F4YKB3_DAVIN (tr|F4YKB3) RNA polymerase alpha subunit protein (Fragment)
OS=Davidia involucrata GN=rpoA PE=3 SV=1
Length = 328
Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust.
Identities = 285/325 (87%), Positives = 304/325 (93%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVT+STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK E+IPHE+STI G QES+HEILMNLK +VL+SNLYGTCDASI VKGPGYVTAQD
Sbjct: 61 CITRAKFERIPHEYSTIVGTQESVHEILMNLKEIVLRSNLYGTCDASICVKGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP+VEI+D+TQ+IASLTE IDLCIGLQIERNRGYRIK NNFQDGSYPIDAVFMPVR
Sbjct: 121 IISPPYVEIVDSTQYIASLTEPIDLCIGLQIERNRGYRIKMPNNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EEENLHLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQHKVTLPLFTFH +L KLRKN+K+IALKYIFIDQSEL + YNCLKRSNI+TL D LN
Sbjct: 241 DNQHKVTLPLFTFHEKLAKLRKNKKKIALKYIFIDQSELPTRIYNCLKRSNIYTLLDFLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILE 325
SQEDLMKIE+FRI+DVK ILGILE
Sbjct: 301 NSQEDLMKIEHFRIEDVKEILGILE 325
>E5KUC8_CORLA (tr|E5KUC8) DNA-directed RNA polymerase subunit alpha
OS=Corynocarpus laevigatus GN=rpoA PE=3 SV=1
Length = 331
Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust.
Identities = 286/331 (86%), Positives = 307/331 (92%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREK+ +STRTL+WKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMR+ALLGEIEGT
Sbjct: 1 MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+STI GIQES+HEI MNLK +VL+SNLYGT DASI VKGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEIFMNLKEIVLRSNLYGTRDASICVKGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+DNTQHIA+LTE I+LCI LQIERNRGYRIK NNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLID FIPFLHAEEEN HL+
Sbjct: 181 NANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDFFIPFLHAEEENFHLK 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQHKVTLPLFTFH RL KLRKN+KEIALKYIFIDQSEL P+ YNCLKRSNIHTL DLLN
Sbjct: 241 NNQHKVTLPLFTFHDRLAKLRKNKKEIALKYIFIDQSELPPRIYNCLKRSNIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFA 331
S +DLMKI++FRI+DVKHIL ILEIEKHFA
Sbjct: 301 NSPDDLMKIKHFRIEDVKHILDILEIEKHFA 331
>E3W0M5_PRUPE (tr|E3W0M5) DNA-directed RNA polymerase subunit alpha OS=Prunus
persica GN=rpoA PE=3 SV=1
Length = 326
Score = 595 bits (1534), Expect = e-168, Method: Compositional matrix adjust.
Identities = 286/326 (87%), Positives = 306/326 (93%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVT+STRTLQWKCVESR D+KRLYYGRFIL+PLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+STI GIQES+HEILMNLK +VL+SNLYGT +ASI +KGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIIGIQESVHEILMNLKEIVLRSNLYGTRNASICIKGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+DNTQHIA+LTE I+LCI LQIERNRGYRIK NNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSY NGNEKQEILFLEIWTNGSLTPKEALH+ASRNLIDLFIPFLHAEEENL LE
Sbjct: 181 NANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHDASRNLIDLFIPFLHAEEENLQLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQHKVTLPLFTFHGRL K RKN+KEIAL+YIFIDQSEL P+ YNCLKRSNIHTL DLLN
Sbjct: 241 NNQHKVTLPLFTFHGRLAKQRKNKKEIALQYIFIDQSELFPRVYNCLKRSNIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEI 326
SQEDLMKI++FRI+DVKHIL ILEI
Sbjct: 301 NSQEDLMKIKHFRIEDVKHILNILEI 326
>D3WEU4_9ROSI (tr|D3WEU4) DNA-directed RNA polymerase subunit alpha OS=Oxalis
latifolia GN=rpoA PE=3 SV=1
Length = 339
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 291/340 (85%), Positives = 310/340 (91%), Gaps = 4/340 (1%)
Query: 1 MVREKVTIST--RTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIE 58
MVREKVT+ST RTLQWKCVESR D KRLYYGRFILSPLMKGQADTIGIA+RRALLGEIE
Sbjct: 1 MVREKVTVSTSTRTLQWKCVESRADGKRLYYGRFILSPLMKGQADTIGIAIRRALLGEIE 60
Query: 59 GTCITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTA 118
GTCITRAKSEKIPHE+ST+AGIQESIHEILMNLK +VL+SNLYGT DAS+ VKGPGYVTA
Sbjct: 61 GTCITRAKSEKIPHEYSTLAGIQESIHEILMNLKEIVLRSNLYGTHDASLCVKGPGYVTA 120
Query: 119 QDIILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMP 178
QDIILPP VEIIDNTQHIASLTE I+LCIGLQIERNRGY K NNFQDGSYPIDAVFMP
Sbjct: 121 QDIILPPSVEIIDNTQHIASLTEPIELCIGLQIERNRGYHKKTPNNFQDGSYPIDAVFMP 180
Query: 179 VRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLH 238
VRNANHS+HSY NGNEKQE+LFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEN H
Sbjct: 181 VRNANHSIHSYRNGNEKQEMLFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENSH 240
Query: 239 LEINQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDL 298
LE NQHKVTLPLFTFH RL KLRK +K+I+LKYIFIDQ ELTP+ YNCLKRSNIHTL DL
Sbjct: 241 LETNQHKVTLPLFTFHDRLAKLRKIKKKISLKYIFIDQLELTPRIYNCLKRSNIHTLLDL 300
Query: 299 LNKSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
LN SQEDLM IE+F I+DVKHI+G+L E + AIDLPK K
Sbjct: 301 LNNSQEDLMNIEHFHIEDVKHIMGVL--ENNLAIDLPKKK 338
>D3WAW9_AUCJA (tr|D3WAW9) DNA-directed RNA polymerase subunit alpha OS=Aucuba
japonica GN=rpoA PE=3 SV=1
Length = 349
Score = 590 bits (1522), Expect = e-167, Method: Compositional matrix adjust.
Identities = 286/333 (85%), Positives = 302/333 (90%), Gaps = 2/333 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVT+STRTLQWKCVESR D+KRLYYGRFILSPLMK QADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKSQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+STI GIQESIHEILMNLK +VL+SNLYGTCD SI V+GPGY+TAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLRSNLYGTCDTSICVRGPGYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP+VEI+D TQHIASLTE IDLCIGLQIERNRGY IK NNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDKTQHIASLTEPIDLCIGLQIERNRGYLIKTPNNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EEENLHLE
Sbjct: 181 NVNYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQH V L FTFH +L KLRKN+ +IALK IFIDQSEL P+ YNCLKRSNI+TL DLLN
Sbjct: 241 DNQHTVPLSPFTFHDKLAKLRKNKNKIALKSIFIDQSELPPRIYNCLKRSNIYTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAID 333
SQEDLMKIE FRI DVK ILGIL EKHFAID
Sbjct: 301 NSQEDLMKIEQFRIQDVKQILGIL--EKHFAID 331
>F6GPU5_NELLU (tr|F6GPU5) DNA-directed RNA polymerase subunit alpha OS=Nelumbo
lutea GN=rpoA PE=3 SV=1
Length = 339
Score = 587 bits (1514), Expect = e-166, Method: Compositional matrix adjust.
Identities = 286/340 (84%), Positives = 311/340 (91%), Gaps = 4/340 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE++ +STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEIAVSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+STI GI+ES+HEILMNLK +VL+SNLYGT DA I V+GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAFICVRGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP VEI+D TQHIASLTE IDLCIGLQIERNRGYR+K NN QDGSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDTTQHIASLTEPIDLCIGLQIERNRGYRMKTPNNSQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI+LFIPFL A+EE++ LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLDAQEEDIQLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKN--QKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDL 298
NQ+KVTLP FTFH RLTKLRKN +KEIALK IFIDQSEL P+TYNCLKRSNIHTL DL
Sbjct: 241 DNQNKVTLPFFTFHDRLTKLRKNKKEKEIALKCIFIDQSELPPRTYNCLKRSNIHTLLDL 300
Query: 299 LNKSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
LN SQEDLMK+E+F+I+DVK IL IL +KHFAIDLPKNK
Sbjct: 301 LNNSQEDLMKMEHFQIEDVKQILDIL--QKHFAIDLPKNK 338
>F1KLF4_FRAVE (tr|F1KLF4) DNA-directed RNA polymerase subunit alpha OS=Fragaria
vesca subsp. vesca GN=rpoA PE=3 SV=1
Length = 331
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 281/330 (85%), Positives = 304/330 (92%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVT+STRTLQWKCVESR D+KRLYYGRFIL+PLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+ST GIQES+HEILMNLK +VL+SNLYGT +ASI VKGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTFVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP +EI+DNTQHIA+LTE I+LCI LQIERNRGYRIK NNFQ+GSYPIDAVFMPVR
Sbjct: 121 IILPPSIEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQEGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSY NGNEKQEILF+EIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLH E
Sbjct: 181 NANHSIHSYVNGNEKQEILFIEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQHKVTLPLFTFHG+L +K +KE LKYIFIDQSEL P+ YNCLKRSNIHTL DLLN
Sbjct: 241 NNQHKVTLPLFTFHGKLANPKKIKKENTLKYIFIDQSELPPRVYNCLKRSNIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHF 330
SQEDLMKI++ RI+DVKHIL ILEI+KHF
Sbjct: 301 NSQEDLMKIKHLRIEDVKHILNILEIKKHF 330
>A9QAY1_9APIA (tr|A9QAY1) RNA polymerase alpha subunit (Fragment) OS=Anethum
graveolens GN=rpoA PE=3 SV=1
Length = 338
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 286/339 (84%), Positives = 311/339 (91%), Gaps = 5/339 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVT+STRTLQWKCVES+ DNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESKADNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKS+KIPHE+ST+ GIQES+H+ILMNLK +VL+SNLYGTCDASI V+GPGYVTAQD
Sbjct: 61 CITRAKSKKIPHEYSTLVGIQESVHDILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIK-PTNNFQDGSYPIDAVFMPV 179
IILPP+VE++DNTQHIASLTE I+L IGLQIER+RGY IK P NNFQDGSYPIDAVFMP+
Sbjct: 121 IILPPYVEVVDNTQHIASLTEPIELHIGLQIERSRGYLIKTPNNNFQDGSYPIDAVFMPI 180
Query: 180 RNANHSVHSY--GNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENL 237
RNANHS+HSY GNGN+KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EEENL
Sbjct: 181 RNANHSIHSYGNGNGNDKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENL 240
Query: 238 HLEINQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSD 297
HL NQH V LP FTFH L KLRKN+K+IALK IFIDQSEL P+ YNCLKRSNI+TL D
Sbjct: 241 HLADNQHMVPLPPFTFHDNLDKLRKNKKKIALKSIFIDQSELPPRIYNCLKRSNIYTLLD 300
Query: 298 LLNKSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPK 336
LLN SQEDLMKIE+FRI+DVK ILGIL EKHF+IDLPK
Sbjct: 301 LLNNSQEDLMKIEHFRINDVKQILGIL--EKHFSIDLPK 337
>D3WC13_9MAGN (tr|D3WC13) DNA-directed RNA polymerase subunit alpha OS=Meliosma
aff. cuneifolia Moore 333 GN=rpoA PE=3 SV=1
Length = 337
Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust.
Identities = 281/339 (82%), Positives = 310/339 (91%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V +STRTLQWKCVESR D+KRLYYGRFI+SPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEVAVSTRTLQWKCVESRADSKRLYYGRFIMSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSE IPHE+STI GI+ES+HEILMNLK +VL+SNLYGT DASI V+GPGYVTAQD
Sbjct: 61 CITRAKSETIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II P VEI+D TQHIASLTE I+LCIGLQIERN GYR+K N QDGSYPIDAVFMPVR
Sbjct: 121 IISPSSVEIVDTTQHIASLTEPINLCIGLQIERNHGYRMKTPKNSQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EEE++ +E
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEEDIIIE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQ++ T+P FTFH RL KLRKN+KEIALK+IFIDQSEL P+TYNCLKRSNIHTL DLLN
Sbjct: 241 DNQNRFTVPFFTFHDRLAKLRKNKKEIALKFIFIDQSELPPRTYNCLKRSNIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
KSQEDLM+IE+FRI+DVKHILGIL +KHF I+LPKNK+
Sbjct: 301 KSQEDLMRIEHFRIEDVKHILGIL--QKHFEINLPKNKL 337
>D3WC92_NELNU (tr|D3WC92) DNA-directed RNA polymerase subunit alpha OS=Nelumbo
nucifera GN=rpoA PE=3 SV=1
Length = 339
Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust.
Identities = 286/340 (84%), Positives = 310/340 (91%), Gaps = 4/340 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE++ +STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEIAVSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+STI GI+ES+HEILMNLK +VL+SNLYGT DA I V+GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAFICVRGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP VEI+D TQHIASLTE IDLCIGLQIERNRGYR+K NN QDGSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDTTQHIASLTEPIDLCIGLQIERNRGYRMKTPNNSQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFL A+EE++ LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLDAQEEDIQLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKN--QKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDL 298
NQ+KVTLP FTFH RLTKLRKN +KEIALK IFIDQSEL P+TYNCLKRSNIHTL DL
Sbjct: 241 DNQNKVTLPFFTFHDRLTKLRKNKKEKEIALKCIFIDQSELPPRTYNCLKRSNIHTLLDL 300
Query: 299 LNKSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
LN SQEDLMK+ +F+I+DVK IL IL +KHFAIDLPKNK
Sbjct: 301 LNNSQEDLMKMFHFQIEDVKQILDIL--QKHFAIDLPKNK 338
>E0XJK0_PUNGR (tr|E0XJK0) DNA-directed RNA polymerase subunit alpha 2 OS=Punica
granatum GN=rpoA PE=3 SV=1
Length = 337
Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust.
Identities = 287/330 (86%), Positives = 303/330 (91%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKV +STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVRVSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK EKIPHE+STI GIQES+HEILMNLK +VL+SNLYGTC+ASI VKGPG VTAQD
Sbjct: 61 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGCVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEIIDNTQHIASL E I+LCIGLQIERNRGY IK NNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPSVEIIDNTQHIASLMEPINLCIGLQIERNRGYHIKTPNNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDL IPFLHAEEENLHLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHAEEENLHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQ+KVTLPLFTFH RLTKLRK +K IALKYIFIDQ EL P+ YN LK+SNIHTL DLLN
Sbjct: 241 NNQYKVTLPLFTFHDRLTKLRKTKKGIALKYIFIDQLELPPRIYNFLKKSNIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHF 330
KSQEDLMKI++FR +DVK IL ILEIEK F
Sbjct: 301 KSQEDLMKIKHFRREDVKQILDILEIEKVF 330
>F6I9Q3_9LAMI (tr|F6I9Q3) DNA-directed RNA polymerase subunit alpha OS=Olea
woodiana subsp. woodiana GN=rpoA PE=3 SV=1
Length = 337
Score = 585 bits (1508), Expect = e-165, Method: Compositional matrix adjust.
Identities = 283/338 (83%), Positives = 306/338 (90%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVT+STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR KSE +PHE+STIAGIQES+HEILMNLK +VL+SNLYGTCDASI V+GPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP+VEI+DNTQHIASLTE IDLCIGLQI+RNRGY IK +NFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLH EEENL LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQH V L TFH +L KLRKN+K+IALK IFIDQSE +P+ YNCLKRSNI+TL DLLN
Sbjct: 241 DNQHTVPLSPLTFHDKLDKLRKNKKKIALKSIFIDQSEFSPRVYNCLKRSNIYTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
S EDLMKIE+ R++D+K IL IL EKHFAIDLPK K
Sbjct: 301 NSPEDLMKIEHLRLEDIKQILVIL--EKHFAIDLPKKK 336
>F6I9G8_OLEEU (tr|F6I9G8) DNA-directed RNA polymerase subunit alpha OS=Olea
europaea subsp. maroccana GN=rpoA PE=3 SV=1
Length = 337
Score = 585 bits (1508), Expect = e-165, Method: Compositional matrix adjust.
Identities = 283/338 (83%), Positives = 306/338 (90%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVT+STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR KSE +PHE+STIAGIQES+HEILMNLK +VL+SNLYGTCDASI V+GPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP+VEI+DNTQHIASLTE IDLCIGLQI+RNRGY IK +NFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLH EEENL LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQH V L TFH +L KLRKN+K+IALK IFIDQSE +P+ YNCLKRSNI+TL DLLN
Sbjct: 241 DNQHTVPLSPLTFHDKLDKLRKNKKKIALKSIFIDQSEFSPRVYNCLKRSNIYTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
S EDLMKIE+ R++D+K IL IL EKHFAIDLPK K
Sbjct: 301 NSPEDLMKIEHLRLEDIKQILVIL--EKHFAIDLPKKK 336
>F6I8R3_OLEEU (tr|F6I8R3) DNA-directed RNA polymerase subunit alpha OS=Olea
europaea subsp. cuspidata GN=rpoA PE=3 SV=1
Length = 337
Score = 585 bits (1508), Expect = e-165, Method: Compositional matrix adjust.
Identities = 283/338 (83%), Positives = 306/338 (90%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVT+STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR KSE +PHE+STIAGIQES+HEILMNLK +VL+SNLYGTCDASI V+GPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP+VEI+DNTQHIASLTE IDLCIGLQI+RNRGY IK +NFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLH EEENL LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQH V L TFH +L KLRKN+K+IALK IFIDQSE +P+ YNCLKRSNI+TL DLLN
Sbjct: 241 DNQHTVPLSPLTFHDKLDKLRKNKKKIALKSIFIDQSEFSPRVYNCLKRSNIYTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
S EDLMKIE+ R++D+K IL IL EKHFAIDLPK K
Sbjct: 301 NSPEDLMKIEHLRLEDIKQILVIL--EKHFAIDLPKKK 336
>F4MKS7_OLEEU (tr|F4MKS7) DNA-directed RNA polymerase subunit alpha OS=Olea
europaea subsp. europaea GN=rpoA PE=3 SV=1
Length = 337
Score = 585 bits (1508), Expect = e-165, Method: Compositional matrix adjust.
Identities = 283/338 (83%), Positives = 306/338 (90%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVT+STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR KSE +PHE+STIAGIQES+HEILMNLK +VL+SNLYGTCDASI V+GPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP+VEI+DNTQHIASLTE IDLCIGLQI+RNRGY IK +NFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLH EEENL LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQH V L TFH +L KLRKN+K+IALK IFIDQSE +P+ YNCLKRSNI+TL DLLN
Sbjct: 241 DNQHTVPLSPLTFHDKLDKLRKNKKKIALKSIFIDQSEFSPRVYNCLKRSNIYTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
S EDLMKIE+ R++D+K IL IL EKHFAIDLPK K
Sbjct: 301 NSPEDLMKIEHLRLEDIKQILVIL--EKHFAIDLPKKK 336
>D2KLN4_OLEEU (tr|D2KLN4) DNA-directed RNA polymerase subunit alpha OS=Olea
europaea GN=rpoA PE=3 SV=1
Length = 337
Score = 585 bits (1508), Expect = e-165, Method: Compositional matrix adjust.
Identities = 283/338 (83%), Positives = 306/338 (90%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVT+STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR KSE +PHE+STIAGIQES+HEILMNLK +VL+SNLYGTCDASI V+GPGYVTAQD
Sbjct: 61 CITRVKSENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP+VEI+DNTQHIASLTE IDLCIGLQI+RNRGY IK +NFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLH EEENL LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQH V L TFH +L KLRKN+K+IALK IFIDQSE +P+ YNCLKRSNI+TL DLLN
Sbjct: 241 DNQHTVPLSPLTFHDKLDKLRKNKKKIALKSIFIDQSEFSPRVYNCLKRSNIYTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
S EDLMKIE+ R++D+K IL IL EKHFAIDLPK K
Sbjct: 301 NSPEDLMKIEHLRLEDIKQILVIL--EKHFAIDLPKKK 336
>E0XJJ9_PUNGR (tr|E0XJJ9) DNA-directed RNA polymerase subunit alpha 1 OS=Punica
granatum GN=rpoA PE=3 SV=1
Length = 337
Score = 584 bits (1506), Expect = e-165, Method: Compositional matrix adjust.
Identities = 286/330 (86%), Positives = 303/330 (91%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKV +STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVRVSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK EKIPHE+STI GIQES+HEILMNLK +VL+S LYGTC+ASI VKGPG VTAQD
Sbjct: 61 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSYLYGTCNASICVKGPGCVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEIIDNTQHIASL E I+LCIGLQIERNRGY IK NNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPSVEIIDNTQHIASLMEPINLCIGLQIERNRGYHIKTPNNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDL IPFLHAEEENLHLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHAEEENLHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQ+KVTLPLFTFH RLTKLRK +KEIALKYIFIDQ EL P+ YN LK+SNIHTL DLLN
Sbjct: 241 NNQYKVTLPLFTFHDRLTKLRKTKKEIALKYIFIDQLELPPRIYNFLKKSNIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHF 330
KSQEDLMKI++FR +DV+ IL ILEIEK F
Sbjct: 301 KSQEDLMKIKHFRREDVEQILDILEIEKVF 330
>D3WE89_9MAGN (tr|D3WE89) DNA-directed RNA polymerase subunit alpha OS=Gunnera
manicata GN=rpoA PE=3 SV=1
Length = 330
Score = 584 bits (1506), Expect = e-165, Method: Compositional matrix adjust.
Identities = 281/329 (85%), Positives = 302/329 (91%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREK+T+STRTLQWKCVESRTD+KRLYYGRFI+SPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKITVSTRTLQWKCVESRTDSKRLYYGRFIMSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+STI GIQES+HEILMNLK ++LKSN+YGT DASI V+GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIILKSNIYGTRDASICVRGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP VEI+DNTQHIASLTE IDLCI LQIE+NRGYRIK N +QDGSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDNTQHIASLTEPIDLCIQLQIEKNRGYRIKTPNTYQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNG EKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE
Sbjct: 181 NANHSIHSYGNGKEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQ+KVTLP FTFH RL KLRKN+KEIALK IFIDQSEL +TYNCLK SNIHTL DLLN
Sbjct: 241 DNQYKVTLPFFTFHDRLAKLRKNKKEIALKSIFIDQSELPSRTYNCLKSSNIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKH 329
SQEDLMKI++F I+DVK IL ILE + H
Sbjct: 301 NSQEDLMKIKHFSIEDVKQILDILEKQFH 329
>G1CCC5_SOLTU (tr|G1CCC5) RNA polymerase alpha subunit OS=Solanum tuberosum
GN=rpoA PE=4 SV=1
Length = 337
Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust.
Identities = 281/338 (83%), Positives = 307/338 (90%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVT+STRTLQWKCVESRTD+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR KSEK+PHE+STI GIQES+HEILMNLK +VL+SNLYGT DASI VKGPGYVTAQD
Sbjct: 61 CITRVKSEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP+VEI+DNTQHIASLTE ID CIGLQIERNRGY IK +NFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILF+EIWTNGSLTPKEALH+ASRNLIDLFIPFLH EE+NL+L+
Sbjct: 181 NANHSIHSYGNGNEKQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQ 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQH V L FTFH +L KL KN+K+IALK IFIDQSEL+ + YNCLK SNI+TL DLLN
Sbjct: 241 DNQHTVPLSPFTFHDKLAKLIKNKKKIALKSIFIDQSELSSRIYNCLKMSNIYTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
SQEDLMKIE+FR +D+K ILGIL EK+F IDL KNK
Sbjct: 301 NSQEDLMKIEHFRSEDIKQILGIL--EKYFVIDLAKNK 336
>G3LV35_9SOLA (tr|G3LV35) RNA polymerase alpha subunit OS=Nicotiana undulata
GN=rpoA PE=4 SV=1
Length = 337
Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust.
Identities = 284/338 (84%), Positives = 305/338 (90%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVT+STRTLQWKCVESRTD+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR KSEK+PHE+STI GIQES+HEILMNLK +VL+SNLYGT DASI VKGPGYVTAQD
Sbjct: 61 CITRVKSEKVPHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPPFVEI+DNTQHIASLTE ID CIGLQIERNRGY IK +NFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPFVEIVDNTQHIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EE+NL+L+
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQ 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQH V L FT H +L KL KN+K+IALK IFIDQSEL + YNCLK SNI+TL DLLN
Sbjct: 241 DNQHTVPLSPFTVHDKLAKLIKNKKKIALKSIFIDQSELPSRIYNCLKMSNIYTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
SQEDLMKIE+FR +DVK ILGIL EK+F IDL KNK
Sbjct: 301 NSQEDLMKIEHFRSEDVKQILGIL--EKYFVIDLAKNK 336
>D7P322_SYZCU (tr|D7P322) DNA-directed RNA polymerase subunit alpha OS=Syzygium
cumini GN=rpoA PE=3 SV=1
Length = 337
Score = 582 bits (1500), Expect = e-164, Method: Compositional matrix adjust.
Identities = 285/330 (86%), Positives = 301/330 (91%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKV +STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVRVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK EKIPHE+STI GIQES+HEILMNLK +VL+SNLYGT +ASI VKGPG VTAQD
Sbjct: 61 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGPGCVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILP VEI+DNTQ+IASLTE I+LCIGLQIERNRGY IK NFQDGSYPIDAVFMPVR
Sbjct: 121 IILPTSVEIVDNTQYIASLTEPINLCIGLQIERNRGYHIKTPKNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQ+KVTLPLFTFH RL KLRK +KEIALK IFIDQ EL P+TYNCLKR NIHTL DLLN
Sbjct: 241 NNQYKVTLPLFTFHDRLVKLRKTKKEIALKSIFIDQFELPPRTYNCLKRYNIHTLFDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHF 330
KSQEDLMK+E FRI+DVK IL LEIEK F
Sbjct: 301 KSQEDLMKMEYFRIEDVKQILNSLEIEKAF 330
>D3WD28_XIMAM (tr|D3WD28) DNA-directed RNA polymerase subunit alpha OS=Ximenia
americana GN=rpoA PE=3 SV=1
Length = 337
Score = 581 bits (1498), Expect = e-164, Method: Compositional matrix adjust.
Identities = 281/338 (83%), Positives = 307/338 (90%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVTI+TRTLQWKCVESR D+KRLYYGRFILSPLMKG+ADTIGIAMRR LLGEIEGT
Sbjct: 1 MVREKVTIATRTLQWKCVESRVDSKRLYYGRFILSPLMKGRADTIGIAMRRVLLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSE++PHE+ST GIQESIHEILMNLK +VL+SNLYGTC+ASI V+GP Y+TAQD
Sbjct: 61 CITRAKSEQVPHEYSTAIGIQESIHEILMNLKEIVLRSNLYGTCNASICVRGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP VEI+DNTQ+IASLTE ID CI LQIERNRGY IK NNFQDGSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDNTQYIASLTEPIDFCIELQIERNRGYHIKMPNNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPK+AL+EAS+NLIDLFIPFLHAEEENLHLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKKALYEASQNLIDLFIPFLHAEEENLHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQHKV LPLFT H RL KLRKN+++IALK IFIDQSEL + YNCLKRSNIHTL DL N
Sbjct: 241 DNQHKVILPLFTPHDRLAKLRKNKEKIALKSIFIDQSELPSRIYNCLKRSNIHTLLDLFN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
SQ+DLMKIE+FR++D K ILGIL EKHFA+DLPKNK
Sbjct: 301 NSQKDLMKIEHFRVEDGKQILGIL--EKHFAVDLPKNK 336
>D3WAP0_ANTMA (tr|D3WAP0) DNA-directed RNA polymerase subunit alpha
OS=Antirrhinum majus GN=rpoA PE=3 SV=1
Length = 336
Score = 580 bits (1496), Expect = e-164, Method: Compositional matrix adjust.
Identities = 282/338 (83%), Positives = 306/338 (90%), Gaps = 3/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVT+STRTLQWKCVESRTD+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR KSE IPHE+STI GIQES+HEILMNLK +VL++NLYGTCDASI +GPGYVTAQD
Sbjct: 61 CITRVKSENIPHEYSTITGIQESVHEILMNLKEIVLRTNLYGTCDASICARGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP+VEI+DNTQHIASLTE I+ CIGL+IERNRGY IK +NFQDGSY IDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPINFCIGLEIERNRGYLIKMPHNFQDGSYSIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N NHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EEENL L+
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLD 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQH + L F+FH +L KLRKN+K IALK IFIDQSEL+P+ YNCLKRSNI+TL DLLN
Sbjct: 241 DNQHTIPLSPFSFHDKLDKLRKNKK-IALKSIFIDQSELSPRAYNCLKRSNIYTLFDLLN 299
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
SQEDLMKIE+FR+ DVK ILGIL EKHFAIDLPK K
Sbjct: 300 NSQEDLMKIEHFRLKDVKEILGIL--EKHFAIDLPKKK 335
>E9K7T0_9APIA (tr|E9K7T0) DNA-directed RNA polymerase subunit alpha OS=Anthriscus
cerefolium GN=rpoA PE=3 SV=1
Length = 338
Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust.
Identities = 282/337 (83%), Positives = 305/337 (90%), Gaps = 6/337 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVT+STRTLQWKCVES+ DNKRLYYGRFI+SPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESKADNKRLYYGRFIMSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +KIPHE+ST+ GIQES+H+ILMNLK +VL+SNLYGTCDASI V+GPGYVTAQD
Sbjct: 61 CITRAKFDKIPHEYSTLMGIQESVHDILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIK-PTNNFQDGSYPIDAVFMPV 179
IILPP+VE++DNTQHIASLTE I+LCIGLQIERNRGY IK P NN QDGSYPIDAVFMPV
Sbjct: 121 IILPPYVEVVDNTQHIASLTEPIELCIGLQIERNRGYLIKTPNNNSQDGSYPIDAVFMPV 180
Query: 180 RNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHL 239
RNANHS+HSYGNGN+KQEILFLEIWTNGSLTPKEALHEASRNLIDLFI FLH EEENLHL
Sbjct: 181 RNANHSIHSYGNGNDKQEILFLEIWTNGSLTPKEALHEASRNLIDLFITFLHTEEENLHL 240
Query: 240 EINQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLL 299
NQH V LP FTFH KLRK QK+IALK IFIDQSEL P+ YNCLKRSNI+TL DLL
Sbjct: 241 ADNQHMVPLPPFTFHD---KLRKKQKKIALKSIFIDQSELPPRIYNCLKRSNIYTLLDLL 297
Query: 300 NKSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPK 336
N SQ+DLMKI+ FRI DVKHILGIL EKH +IDLPK
Sbjct: 298 NNSQKDLMKIDRFRIKDVKHILGIL--EKHLSIDLPK 332
>E3UGZ3_EUCGR (tr|E3UGZ3) DNA-directed RNA polymerase subunit alpha OS=Eucalyptus
grandis GN=rpoA PE=3 SV=1
Length = 337
Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust.
Identities = 283/330 (85%), Positives = 300/330 (90%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKV +STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVRVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK EKIPHE+STI GIQES+HEILMNLK +VL+SNLYGT +ASI VKGPG VTAQD
Sbjct: 61 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGPGCVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILP VEI+DNTQ+IA+LTE I+LCIGLQIERNRGY IK NFQDGSYPIDAVFMPVR
Sbjct: 121 IILPTSVEIVDNTQYIANLTEPINLCIGLQIERNRGYHIKTPKNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQ+KVTLP FTFH RL KLRK +KEIALK IFIDQ EL P+TYNCLKR NIHTL DLLN
Sbjct: 241 NNQYKVTLPFFTFHDRLAKLRKTKKEIALKSIFIDQFELPPRTYNCLKRYNIHTLFDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHF 330
KSQEDLMK+E FRI+DVK IL LEIEK F
Sbjct: 301 KSQEDLMKMEYFRIEDVKQILDSLEIEKAF 330
>D3WCH1_NEROL (tr|D3WCH1) DNA-directed RNA polymerase subunit alpha OS=Nerium
oleander GN=rpoA PE=3 SV=1
Length = 337
Score = 578 bits (1491), Expect = e-163, Method: Compositional matrix adjust.
Identities = 281/338 (83%), Positives = 305/338 (90%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREK+T+STRTLQWKCVESRT++KRLYYGRFILSPL+KGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKITVSTRTLQWKCVESRTESKRLYYGRFILSPLLKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K +K+PHE+STI GIQES+HEILMNLK +VL+SNLYGTCDASI V+GPGYVTAQD
Sbjct: 61 CITRVKFDKVPHEYSTIKGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
I+LPP+VEI+DNTQHIASL E I+LCIGLQIERNRGY I+ NFQDGSYPIDAVFMPVR
Sbjct: 121 IVLPPYVEIVDNTQHIASLMEPINLCIGLQIERNRGYLIQTPQNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EEEN HLE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENSHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQH V L F FH +LTKL KN+KEIALK IFIDQ EL P+ YNCLKRSNI+TL DLLN
Sbjct: 241 NNQHAVPLFPFIFHDKLTKLIKNKKEIALKSIFIDQLELPPRIYNCLKRSNIYTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
SQEDLMKIE+FRI+DVK IL IL EKH AI LPKNK
Sbjct: 301 NSQEDLMKIEHFRIEDVKQILVIL--EKHLAIFLPKNK 336
>D3WEM7_LIQST (tr|D3WEM7) DNA-directed RNA polymerase subunit alpha
OS=Liquidambar styraciflua GN=rpoA PE=3 SV=1
Length = 338
Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust.
Identities = 289/339 (85%), Positives = 306/339 (90%), Gaps = 3/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVT+STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+STI GIQES+HEILMNLK VVL+SNLYGT DASI V+GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGTRDASICVRGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP VEI+DNTQHIASLTE IDLCIGL++ERNRGYRIK NNFQD SYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDNTQHIASLTEPIDLCIGLKMERNRGYRIKTPNNFQDRSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGN NEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE
Sbjct: 181 NANHSIHSYGNENEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKY-IFIDQSELTPKTYNCLKRSNIHTLSDLL 299
NQHK LPLFTFH RL KL++ K+ IFIDQSEL P+ Y CLKRSNIHTL DLL
Sbjct: 241 DNQHKTILPLFTFHDRLAKLKEKTKKKKALKSIFIDQSELPPRIYTCLKRSNIHTLLDLL 300
Query: 300 NKSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
N +QEDLMKIE+FRI+DVK ILGIL EKHFAIDLPKNK
Sbjct: 301 NNNQEDLMKIEHFRIEDVKKILGIL--EKHFAIDLPKNK 337
>E3VU19_THECC (tr|E3VU19) DNA-directed RNA polymerase subunit alpha OS=Theobroma
cacao GN=rpoA PE=3 SV=1
Length = 327
Score = 572 bits (1474), Expect = e-161, Method: Compositional matrix adjust.
Identities = 285/327 (87%), Positives = 300/327 (91%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKV +STRTLQWKCVESRTD+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVKVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+STI GIQES+HEILMNLK +VL+SNLYGT +A I KGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNAFICAKGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+DNTQHIASLTE IDLCIGLQIERNRGYRIK NNF DGSYP+DAVFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIASLTEPIDLCIGLQIERNRGYRIKTPNNFHDGSYPLDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+H YGN NEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE
Sbjct: 181 NANHSIHCYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQH VTLP F FH RL KLRK +KEIALKYIFIDQSEL P+ YNCLK+SNIHTL DLLN
Sbjct: 241 NNQHNVTLPFFPFHDRLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKKSNIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIE 327
SQEDLMKIE+FRI+DVK ILGILE E
Sbjct: 301 NSQEDLMKIEHFRIEDVKQILGILEKE 327
>D3WFE6_9ROSI (tr|D3WFE6) DNA-directed RNA polymerase subunit alpha OS=Staphylea
colchica GN=rpoA PE=3 SV=1
Length = 342
Score = 572 bits (1473), Expect = e-161, Method: Compositional matrix adjust.
Identities = 289/343 (84%), Positives = 308/343 (89%), Gaps = 7/343 (2%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVT+STRTLQWKCVESR D KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADRKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+STI GIQES+HEILMNLK +VL+SNLYGT DASI +KGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICIKGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNN--FQDGSYPIDAVFMP 178
IILPP VEI+DNTQHIASLTE +DLCIGLQIERNRGY IK NN FQDGSYPIDAVFMP
Sbjct: 121 IILPPSVEIVDNTQHIASLTEPMDLCIGLQIERNRGYSIKTPNNFHFQDGSYPIDAVFMP 180
Query: 179 VRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLH 238
VRN N+S+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE+N H
Sbjct: 181 VRNVNYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEDNGH 240
Query: 239 LEINQHKVTLPLFTFHG---RLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTL 295
LE N HK+TLPLFTFH +L K +K QKEI LKYIFIDQSEL+P+ YNCLKRSNIHTL
Sbjct: 241 LENNHHKLTLPLFTFHDRLAKLRKKKKEQKEIVLKYIFIDQSELSPRIYNCLKRSNIHTL 300
Query: 296 SDLLNKSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
DLLN SQEDL+KIE+ RI+DVK IL ILEIE IDLPKNK
Sbjct: 301 LDLLNNSQEDLLKIEDLRIEDVKQILDILEIEN--TIDLPKNK 341
>B1A967_CARPA (tr|B1A967) DNA-directed RNA polymerase subunit alpha OS=Carica
papaya GN=rpoA PE=3 SV=1
Length = 327
Score = 571 bits (1472), Expect = e-161, Method: Compositional matrix adjust.
Identities = 276/325 (84%), Positives = 294/325 (90%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKV +STRTLQWKCVESRTD+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVKVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+STI GIQES+HEILMNLK +VL+SNLYGT DA I VKGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDAFICVKGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
I+LPP VEI+DNTQHIASLTE IDL IGLQIERNRGY IK NNFQDGSYPIDAVFMPV+
Sbjct: 121 IVLPPSVEIVDNTQHIASLTEPIDLRIGLQIERNRGYGIKTPNNFQDGSYPIDAVFMPVQ 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYG GNEKQEILFLEIWTNGSLTPKEALHEASRNLI+LFIPFLHAEEE +LE
Sbjct: 181 NANHSIHSYGTGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEEKFYLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQHKVTLP F FH RL KLRK + EIA +YIFIDQ EL P+ YNCLK+SNIHTL DLLN
Sbjct: 241 NNQHKVTLPFFPFHDRLAKLRKKKTEIAFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILE 325
SQEDLMKIE+FR +DVK IL ILE
Sbjct: 301 NSQEDLMKIEHFRTEDVKQILSILE 325
>B0Z576_OENGL (tr|B0Z576) DNA-directed RNA polymerase subunit alpha OS=Oenothera
glazioviana GN=rpoA PE=3 SV=1
Length = 366
Score = 571 bits (1472), Expect = e-161, Method: Compositional matrix adjust.
Identities = 278/330 (84%), Positives = 297/330 (90%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKV +STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVRVSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK EKIPHE+STI GIQES+HEILMNLK +VL+SNLYGTC+ASI VKGPG VTAQD
Sbjct: 61 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGCVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
I+LPP VEIIDNTQHIASL E I LCIGLQIERNRGY IK NNFQDGSYPIDAVFMPVR
Sbjct: 121 ILLPPSVEIIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGN NEKQEILFLEIWTNGSLTPKEALHEASRNLIDLF+PFLHAEEENLHL
Sbjct: 181 NANHSIHSYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHLG 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N++ VT PLFTFH +L KLRK + EIALK IFIDQ EL P+ YN LK S IHTLSDLLN
Sbjct: 241 KNKYNVTFPLFTFHKKLAKLRKPKNEIALKSIFIDQLELPPRIYNSLKGSKIHTLSDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHF 330
KSQEDLMK+++FRI+DVK IL ILEIEK F
Sbjct: 301 KSQEDLMKMKHFRIEDVKQILDILEIEKAF 330
>B0Z4Z2_OENBI (tr|B0Z4Z2) DNA-directed RNA polymerase subunit alpha OS=Oenothera
biennis GN=rpoA PE=3 SV=1
Length = 366
Score = 571 bits (1472), Expect = e-161, Method: Compositional matrix adjust.
Identities = 278/330 (84%), Positives = 297/330 (90%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKV +STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVRVSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK EKIPHE+STI GIQES+HEILMNLK +VL+SNLYGTC+ASI VKGPG VTAQD
Sbjct: 61 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGCVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
I+LPP VEIIDNTQHIASL E I LCIGLQIERNRGY IK NNFQDGSYPIDAVFMPVR
Sbjct: 121 ILLPPSVEIIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGN NEKQEILFLEIWTNGSLTPKEALHEASRNLIDLF+PFLHAEEENLHL
Sbjct: 181 NANHSIHSYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHLG 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N++ VT PLFTFH +L KLRK + EIALK IFIDQ EL P+ YN LK S IHTLSDLLN
Sbjct: 241 KNKYNVTFPLFTFHKKLAKLRKPKNEIALKSIFIDQLELPPRIYNSLKGSKIHTLSDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHF 330
KSQEDLMK+++FRI+DVK IL ILEIEK F
Sbjct: 301 KSQEDLMKMKHFRIEDVKQILDILEIEKAF 330
>B0Z5G0_OENPA (tr|B0Z5G0) DNA-directed RNA polymerase subunit alpha OS=Oenothera
parviflora GN=rpoA PE=3 SV=1
Length = 366
Score = 570 bits (1470), Expect = e-161, Method: Compositional matrix adjust.
Identities = 278/330 (84%), Positives = 297/330 (90%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKV +STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVRVSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK EKIPHE+STI GIQES+HEILMNLK +VL+SNLYGTC+ASI VKGPG VTAQD
Sbjct: 61 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGCVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
I+LPP VEIIDNTQHIASL E I LCIGLQIERNRGY IK NNFQDGSYPIDAVFMPVR
Sbjct: 121 ILLPPSVEIIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGN NEKQEILFLEIWTNGSLTPKEALHEASRNLIDLF+PFLHAEEENLHL
Sbjct: 181 NANHSIHSYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHLG 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N++ VT PLFTFH +L KLRK + EIALK IFIDQ EL P+ YN LK S IHTLSDLLN
Sbjct: 241 NNKYNVTFPLFTFHKKLAKLRKPKNEIALKSIFIDQLELPPRIYNSLKGSKIHTLSDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHF 330
KSQEDLMK+++FRI+DVK IL ILEIEK F
Sbjct: 301 KSQEDLMKMKHFRIEDVKQILDILEIEKAF 330
>B0Z4Q8_OENAR (tr|B0Z4Q8) DNA-directed RNA polymerase subunit alpha OS=Oenothera
argillicola GN=rpoA PE=3 SV=1
Length = 366
Score = 570 bits (1470), Expect = e-161, Method: Compositional matrix adjust.
Identities = 278/330 (84%), Positives = 297/330 (90%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKV +STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVRVSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK EKIPHE+STI GIQES+HEILMNLK +VL+SNLYGTC+ASI VKGPG VTAQD
Sbjct: 61 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGCVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
I+LPP VEIIDNTQHIASL E I LCIGLQIERNRGY IK NNFQDGSYPIDAVFMPVR
Sbjct: 121 ILLPPSVEIIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGN NEKQEILFLEIWTNGSLTPKEALHEASRNLIDLF+PFLHAEEENLHL
Sbjct: 181 NANHSIHSYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEEENLHLG 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N++ VT PLFTFH +L KLRK + EIALK IFIDQ EL P+ YN LK S IHTLSDLLN
Sbjct: 241 NNKYNVTFPLFTFHKKLAKLRKPKNEIALKSIFIDQLELPPRIYNSLKGSKIHTLSDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHF 330
KSQEDLMK+++FRI+DVK IL ILEIEK F
Sbjct: 301 KSQEDLMKMKHFRIEDVKQILDILEIEKAF 330
>D3WFL7_TROAR (tr|D3WFL7) DNA-directed RNA polymerase subunit alpha
OS=Trochodendron aralioides GN=rpoA PE=3 SV=1
Length = 337
Score = 567 bits (1462), Expect = e-160, Method: Compositional matrix adjust.
Identities = 276/338 (81%), Positives = 305/338 (90%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE++T+ST TLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREQITLSTWTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+STI GI+ES+ EIL+NLK +VL+SNLYGT DASI V+GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIEESVQEILLNLKEIVLRSNLYGTLDASICVRGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP VEI+D TQHIASLTE IDLCIGLQIERNRGYR+K NN QDGSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDATQHIASLTEPIDLCIGLQIERNRGYRMKTPNNSQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NA+HS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEE++ LE
Sbjct: 181 NASHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEESIKLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQ+ ++LP F FH RL L+K +KEIA K IFIDQSEL P+TYNCLKRSNI+TL DLLN
Sbjct: 241 DNQNGISLPFFAFHDRLANLKKKKKEIAFKCIFIDQSELPPRTYNCLKRSNIYTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
SQEDLMKI++F I+DVK IL IL +KHF+IDLPKNK
Sbjct: 301 NSQEDLMKIDHFHIEDVKQILDIL--QKHFSIDLPKNK 336
>F1AMK6_GOSTH (tr|F1AMK6) DNA-directed RNA polymerase subunit alpha OS=Gossypium
thurberi GN=rpoA PE=3 SV=1
Length = 329
Score = 567 bits (1462), Expect = e-160, Method: Compositional matrix adjust.
Identities = 276/327 (84%), Positives = 293/327 (89%), Gaps = 2/327 (0%)
Query: 1 MVREKVTIST--RTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIE 58
MVREKV +ST RT QWKCVESRTD+KRLYYGRFILSPLMKGQADTIGIAMRRALLGE+E
Sbjct: 1 MVREKVKVSTSTRTRQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGELE 60
Query: 59 GTCITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTA 118
GTCITRAKSEKIPHE+STI GIQES+HEILMNLK +VL+ NLYGT +A I KGPGYVTA
Sbjct: 61 GTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRGNLYGTRNAFICAKGPGYVTA 120
Query: 119 QDIILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMP 178
QDIILPP VEI+DNTQH+ASLTE IDLCIGLQIERNRGY IK NF DGSYPIDAVFMP
Sbjct: 121 QDIILPPSVEIVDNTQHVASLTEPIDLCIGLQIERNRGYGIKTPKNFHDGSYPIDAVFMP 180
Query: 179 VRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLH 238
VRNANHS+H YGN NEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EEENLH
Sbjct: 181 VRNANHSIHCYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLH 240
Query: 239 LEINQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDL 298
LE NQH VTLP F FH RL KL K +KEIALKYIFIDQSEL P+ YNCLK+SNIHTL DL
Sbjct: 241 LENNQHDVTLPFFPFHDRLVKLTKKKKEIALKYIFIDQSELPPRIYNCLKKSNIHTLLDL 300
Query: 299 LNKSQEDLMKIENFRIDDVKHILGILE 325
LN S+EDLMKIE+FRI+DVK ILGILE
Sbjct: 301 LNNSREDLMKIEHFRIEDVKQILGILE 327
>Q4FGA4_ACOAM (tr|Q4FGA4) RNA polymerase alpha chain (Fragment) OS=Acorus
americanus GN=rpoA PE=3 SV=1
Length = 337
Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust.
Identities = 274/338 (81%), Positives = 303/338 (89%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V STR LQWKCVESR D+KRLYYGRFILSPL+KGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEVVGSTRALQWKCVESRADSKRLYYGRFILSPLLKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEK+PHE+STIAGI+ES+HEILMNLK +VL+SNLYGT DASI V+GP VTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIAGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRCVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP VE++D TQHIASLTE IDLCIGLQI+R+RGYR+K T N QDGSYPIDAV MPVR
Sbjct: 121 IISPPSVEVVDTTQHIASLTEPIDLCIGLQIQRDRGYRMKTTKNSQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGN+KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEE+++ E
Sbjct: 181 NANHSIHSYGNGNQKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEDINFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQ++ T+P FTF RL L+KN+KEIALK IFIDQSEL P+TYNCLKRSNIHTL DLL+
Sbjct: 241 ENQNRFTVPPFTFPDRLANLKKNKKEIALKCIFIDQSELPPRTYNCLKRSNIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
SQEDLMKIE FRI+DVK IL L +KHFAIDLPKNK
Sbjct: 301 NSQEDLMKIEYFRIEDVKQILDTL--QKHFAIDLPKNK 336
>B5LMQ5_CICAR (tr|B5LMQ5) DNA-directed RNA polymerase subunit alpha OS=Cicer
arietinum GN=rpoA PE=3 SV=1
Length = 333
Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust.
Identities = 275/333 (82%), Positives = 301/333 (90%), Gaps = 2/333 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+REKV +STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRR LLGEIEGT
Sbjct: 1 MIREKVKVSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRILLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+STI GIQESIHEILMNLK +VL+SNLYGT DASI KGPG VTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLRSNLYGTRDASICFKGPGSVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+DNTQHIA+LTE I+LC+ L++ERNRGYRIK NN QD SY IDAVFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINLCMELKLERNRGYRIKTLNNIQDESYTIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEAL EASRNLIDLFIPFLHAEE+ L+LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALFEASRNLIDLFIPFLHAEEDKLNLE 240
Query: 241 INQHKVTLPLFTFHGRLT--KLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDL 298
NQ KVTLPLFTFH R KLRKN+KEIALK IFIDQ EL P+ YNCLK+SNIHTL +L
Sbjct: 241 NNQQKVTLPLFTFHDRFVKDKLRKNKKEIALKSIFIDQLELPPRIYNCLKKSNIHTLLEL 300
Query: 299 LNKSQEDLMKIENFRIDDVKHILGILEIEKHFA 331
LNKSQE+LMKIE+FR++DVK+IL +L+IEKHFA
Sbjct: 301 LNKSQEELMKIEHFRVEDVKNILNLLQIEKHFA 333
>D3WBC7_9BORA (tr|D3WBC7) DNA-directed RNA polymerase subunit alpha OS=Ehretia
acuminata GN=rpoA PE=3 SV=1
Length = 339
Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust.
Identities = 288/340 (84%), Positives = 310/340 (91%), Gaps = 4/340 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKV +STRTLQWKCVESRTD+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVIVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSE--KIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTA 118
ITR KSE K+PHE+STI+GIQES+HEILMNLK +VL+SNLYGTCDASI V+GPGYVTA
Sbjct: 61 SITRVKSESEKVPHEYSTISGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTA 120
Query: 119 QDIILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMP 178
QDIILPP+VEI+DNTQHIASLTE IDLCIGLQIERNRGY IK +NFQDGSYPIDAVFMP
Sbjct: 121 QDIILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMP 180
Query: 179 VRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLH 238
VRNANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EEEN+H
Sbjct: 181 VRNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENVH 240
Query: 239 LEINQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDL 298
LE NQH V L F FH +L KLRK +K+IALK IFIDQSEL P+ YNCLKRSNI+TL DL
Sbjct: 241 LEDNQHTVPLSPFIFHDKLAKLRKKKKKIALKSIFIDQSELPPRIYNCLKRSNIYTLLDL 300
Query: 299 LNKSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
LN SQEDLMKIE+FRI+DVK ILGIL EKHFAIDL K+K
Sbjct: 301 LNNSQEDLMKIEHFRIEDVKQILGIL--EKHFAIDLSKSK 338
>D3WDV2_9ROSI (tr|D3WDV2) DNA-directed RNA polymerase subunit alpha OS=Euonymus
americanus GN=rpoA PE=3 SV=1
Length = 338
Score = 565 bits (1455), Expect = e-159, Method: Compositional matrix adjust.
Identities = 273/339 (80%), Positives = 305/339 (89%), Gaps = 1/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKV +STRTLQWKCVESRTD+KRL+YGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVKVSTRTLQWKCVESRTDSKRLFYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
ITRAKSEKIPHE+ST+ GIQE++HE+LMNLK +VL+ NLYG + SI +KGPGYVTAQD
Sbjct: 61 SITRAKSEKIPHEYSTVVGIQETVHELLMNLKEIVLRGNLYGIQNGSICIKGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
++LPP VEI+DNTQHIA LTE I CI LQIER+RGY IK NNFQ+GS+PIDAVFMPVR
Sbjct: 121 LVLPPSVEIVDNTQHIAILTEPIYFCIELQIERHRGYHIKTPNNFQEGSFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ SY NG+EK+EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE
Sbjct: 181 NTNYSIQSYRNGSEKEEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
+ +KVTLPLFTFH RLTKL+KNQKE+ALKYIFIDQ ELT +TYNCLKRSNIHTL DLLN
Sbjct: 241 NDWYKVTLPLFTFHDRLTKLKKNQKEMALKYIFIDQLELTSRTYNCLKRSNIHTLFDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
KS E LMK+E+F I+DVKHIL ILE +K FA DLPKNK+
Sbjct: 301 KSHEYLMKMEHFHIEDVKHILNILE-KKKFATDLPKNKL 338
>B2XWQ5_FAGEA (tr|B2XWQ5) DNA-directed RNA polymerase subunit alpha OS=Fagopyrum
esculentum subsp. ancestrale GN=rpoA PE=3 SV=1
Length = 337
Score = 564 bits (1454), Expect = e-159, Method: Compositional matrix adjust.
Identities = 272/339 (80%), Positives = 300/339 (88%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MV +K+ +STRTLQWKCVESRTD+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVEDKIRVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+STI GIQES+HEILMNLK +VL+S YGTCDASI V+GPG VTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSTFYGTCDASICVRGPGGVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP+VEI+D TQHIA+LTE IDL I LQ+ERNRGYRIK NNFQDGSYPID VFMPVR
Sbjct: 121 IISPPYVEIVDTTQHIANLTEPIDLRIELQLERNRGYRIKTPNNFQDGSYPIDVVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N NHS+HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFL+AE+EN HLE
Sbjct: 181 NVNHSIHSYSNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQ +VTLPLF FH RL +LRKN+K+IALK IFIDQ EL P+ YNCLK SNIHTL DLL
Sbjct: 241 DNQDRVTLPLFLFHDRLIELRKNKKKIALKSIFIDQLELPPRIYNCLKNSNIHTLLDLLT 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
SQ+D+MKIE+F I+DVK IL L EKHFAI+LPK K+
Sbjct: 301 NSQDDIMKIEHFSIEDVKQILDTL--EKHFAINLPKKKV 337
>D3WF11_PLUAU (tr|D3WF11) DNA-directed RNA polymerase subunit alpha OS=Plumbago
auriculata GN=rpoA PE=3 SV=1
Length = 333
Score = 564 bits (1454), Expect = e-159, Method: Compositional matrix adjust.
Identities = 274/334 (82%), Positives = 300/334 (89%), Gaps = 2/334 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREK+ +STRTLQWKCVESRTDNKRL YGRFIL PL KGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKIRVSTRTLQWKCVESRTDNKRLSYGRFILFPLRKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKI HE+ST+ GIQES+HEILMNLK +VL+SNLYGT DASI V+GP +TA D
Sbjct: 61 CITRAKSEKIAHEYSTLVGIQESVHEILMNLKEIVLRSNLYGTRDASICVRGPRCITAHD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEIIDNTQHIA+LTE IDLCIGLQ+ERNRGYRI+ NNFQDGSYPIDAVFMPVR
Sbjct: 121 IILPPGVEIIDNTQHIATLTEPIDLCIGLQLERNRGYRIQTQNNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N NHS+HSYGNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEENLH E
Sbjct: 181 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLHFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQHKVTLP FTFH +L +LRK++K+IALK IFIDQ E P+ YNCLK SNIHTL DLLN
Sbjct: 241 ANQHKVTLPPFTFHDKLNELRKDKKKIALKSIFIDQLEFPPRIYNCLKNSNIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDL 334
KSQEDLM+IE+FRI+D+K I G L EK+F+IDL
Sbjct: 301 KSQEDLMQIEDFRIEDLKQIWGTL--EKNFSIDL 332
>G0WVQ4_9MAGN (tr|G0WVQ4) RNA polymerase alpha subunit OS=Magnolia kwangsiensis
GN=rpoA PE=4 SV=1
Length = 337
Score = 564 bits (1454), Expect = e-159, Method: Compositional matrix adjust.
Identities = 271/339 (79%), Positives = 305/339 (89%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V +STRTLQWKCVESRTD+KRLYYGRFIL+PLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEVAVSTRTLQWKCVESRTDSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEK+PHE+STI GI+ES+H ILMNLK +VL+S+LYGT DASI V+GP YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHAILMNLKEIVLRSHLYGTRDASICVRGPRYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP VEI+D TQHIASLTE IDLCI LQI+R+RGYR+K NN+QDGSYPIDAV MPVR
Sbjct: 121 IIPPPSVEIVDTTQHIASLTEPIDLCIELQIDRDRGYRMKTPNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE++++LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDINLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N ++ T+P FTFH L +RKN+K I LK IFIDQSEL P+TYNCLKRSNIHTL DLL+
Sbjct: 241 DNPNRFTVPFFTFHDILANIRKNKKGITLKCIFIDQSELPPRTYNCLKRSNIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
SQEDLM+IE+FRI+DVK IL IL +KHF IDLPKNK+
Sbjct: 301 NSQEDLMRIEHFRIEDVKQILDIL--QKHFTIDLPKNKL 337
>D3WB48_DILIN (tr|D3WB48) DNA-directed RNA polymerase subunit alpha OS=Dillenia
indica GN=rpoA PE=3 SV=1
Length = 353
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 276/338 (81%), Positives = 296/338 (87%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE++ +S RTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREQIRVSIRTLQWKCVESRIDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+ST+ GIQES+HEILMNLK +VL+SNLYGT +ASI +GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTMRGIQESVHEILMNLKEIVLRSNLYGTRNASICARGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEIIDNTQHIASLTE I+L I LQIERNRGY IK NNFQD SYPIDAVFMPVR
Sbjct: 121 IILPPSVEIIDNTQHIASLTEPINLYIELQIERNRGYHIKTPNNFQDESYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRN IDLFIPF+H E+ENL+L
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNFIDLFIPFIHVEKENLYLG 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQ K T PLFTFH L KLRKN+KEIALKY+FIDQ EL P+ YNCLKRSNIHTL DLLN
Sbjct: 241 DNQDKDTFPLFTFHDELAKLRKNKKEIALKYLFIDQLELPPRIYNCLKRSNIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
SQEDLMKIE FR +DVK I GIL EKH L KNK
Sbjct: 301 NSQEDLMKIEYFRREDVKQIFGIL--EKHLNFFLTKNK 336
>Q4FGA1_RANMC (tr|Q4FGA1) RNA polymerase alpha chain (Fragment) OS=Ranunculus
macranthus GN=rpoA PE=3 SV=1
Length = 339
Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust.
Identities = 275/340 (80%), Positives = 302/340 (88%), Gaps = 4/340 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R++V +S RTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MLRDEVAVSARTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+STI GI+ES+HEILMNLK +VL+SNLYGT DASI VKGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP VEI+D TQHIASLTE +D CIGLQIE NRGYR+K NN Q GSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDTTQHIASLTEPVDFCIGLQIESNRGYRMKTPNNAQKGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNE QEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE++ +L+
Sbjct: 181 NANHSIHSYGNGNENQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDQNLK 240
Query: 241 INQ-HKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLL 299
NQ + VTLP FTFH KL+KN+KEI LK IFIDQSEL +TYNCLKR+NIHTL DLL
Sbjct: 241 DNQKNGVTLPFFTFHDGFDKLKKNKKEIELKCIFIDQSELPSRTYNCLKRANIHTLLDLL 300
Query: 300 NKSQEDLMKIENFRIDDVKHILGILEIEKHF-AIDLPKNK 338
NKSQEDLMKIE+FRI+DVK IL I I+KHF IDLPKNK
Sbjct: 301 NKSQEDLMKIEHFRIEDVKQILDI--IQKHFVVIDLPKNK 338
>B2LMM5_GUIAB (tr|B2LMM5) DNA-directed RNA polymerase subunit alpha OS=Guizotia
abyssinica GN=rpoA PE=3 SV=1
Length = 335
Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust.
Identities = 274/338 (81%), Positives = 302/338 (89%), Gaps = 4/338 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREK+T+STRTLQWKCVES D+KRL YGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKITVSTRTLQWKCVESAADSKRLLYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKS+KI HE+STI GIQES+HEILMNLK +VL+SNLYGT +ASI V+GPGYVTAQD
Sbjct: 61 CITRAKSDKISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTYEASICVRGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP+VEI+DNTQHIASLTE I+L IGLQIE+NRGY IK N FQDGSYPID VFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSY NGN +EILFLEIWTNGSLTPKEALHEASRNLIDL IPFLH +EENL+LE
Sbjct: 181 NANHSIHSYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNLE 238
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQH V LP FTF+ +L KL KN+K++ALK IFIDQSEL P+ YNCLKRSNI+TL DLLN
Sbjct: 239 DNQHIVPLPPFTFYDKLAKLTKNKKKMALKSIFIDQSELPPRIYNCLKRSNIYTLLDLLN 298
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
SQEDLMKIE+FRI+DVK ILGIL EK+F IDLPKNK
Sbjct: 299 NSQEDLMKIEHFRIEDVKQILGIL--EKNFVIDLPKNK 334
>G1FB73_SPIPO (tr|G1FB73) RNA polymerase alpha subunit OS=Spirodela polyrrhiza
GN=rpoA PE=4 SV=1
Length = 339
Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust.
Identities = 266/338 (78%), Positives = 305/338 (90%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE++ STRTLQWKCVESR D+KRL+YGRF+LSPLMKGQADTIGIAMRRALL E+EGT
Sbjct: 1 MVREEIAGSTRTLQWKCVESRVDSKRLHYGRFVLSPLMKGQADTIGIAMRRALLEEMEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEK+PHE+STIAGI+ES+HEILMNLK +VL+SNLYGT DASI VKGP Y+TAQD
Sbjct: 61 CITRAKSEKVPHEYSTIAGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILP VEI+D TQHIA+LTE +DLCIGLQI+R+RGYR++PTN+ QDGSYPIDAVFMPVR
Sbjct: 121 IILPASVEIVDTTQHIATLTEPLDLCIGLQIQRDRGYRMRPTNDSQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS++SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE++++LE
Sbjct: 181 NANHSIYSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEKDINLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+ + TLPLFTFH RL L KN+KEIALK IFIDQ EL +TYNCLKRSNIHTLSDLL+
Sbjct: 241 ENKSRFTLPLFTFHDRLANLTKNKKEIALKCIFIDQLELPSRTYNCLKRSNIHTLSDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
SQEDLMKIE ++D++ I+ IL +KHF I+LPKNK
Sbjct: 301 NSQEDLMKIEYLHLEDIQQIVDIL--QKHFTINLPKNK 336
>C3UP04_9MAGN (tr|C3UP04) DNA-directed RNA polymerase subunit alpha
OS=Megaleranthis saniculifolia GN=rpoA PE=3 SV=1
Length = 328
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 268/325 (82%), Positives = 295/325 (90%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+RE+V +STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MLREEVAVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+STI GI+ES+HEILMNLK +VL+SNLYGT DASI VKGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP VEI+D TQHIASLTE IDLCI LQIERNRGYR+K NN Q+ SYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDITQHIASLTEPIDLCIELQIERNRGYRMKTPNNAQERSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWT+GSLTPKEAL+EASRNLIDLFIPFLHAEE++ LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTDGSLTPKEALYEASRNLIDLFIPFLHAEEQDTKLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQ +VTLP FTFH L K+RKN+KEI LK IFIDQSEL +TYNCLKR NIHTL DLLN
Sbjct: 241 DNQSRVTLPFFTFHDGLDKVRKNKKEIELKCIFIDQSELPSRTYNCLKRFNIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILE 325
KSQEDLMK+E+FRI+DV+ ILGI++
Sbjct: 301 KSQEDLMKMEHFRIEDVRRILGIIK 325
>A9QBM7_MUSAC (tr|A9QBM7) RNA polymerase alpha subunit (Fragment) OS=Musa
acuminata GN=rpoA PE=3 SV=1
Length = 339
Score = 555 bits (1430), Expect = e-156, Method: Compositional matrix adjust.
Identities = 266/338 (78%), Positives = 300/338 (88%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V STRTLQW+CVESR D+KRLYYGRF+LSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEVAGSTRTLQWRCVESRVDSKRLYYGRFVLSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRA SEK+PHE+STI GI+ES+HEIL+NLK +VL+SN+YG DASI +GP YVTAQD
Sbjct: 61 CITRANSEKVPHEYSTIIGIEESVHEILLNLKEIVLRSNIYGVRDASICARGPKYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP VEI+D TQHIA+LTE IDLCIGLQI R+RGYR KPT N Q+GSYPIDAV MPVR
Sbjct: 121 IISPPSVEIVDTTQHIANLTEPIDLCIGLQIRRDRGYRTKPTTNSQNGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE+++ +
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFK 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ TLP+FTF RLT L+KN+KEI LK IFIDQSEL +TYNCLKRSNIHTL DLLN
Sbjct: 241 ENKNRFTLPIFTFQDRLTNLKKNKKEIPLKCIFIDQSELPSRTYNCLKRSNIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
KSQEDLM+IE FRI+DVK I L +KHFAIDLPKN+
Sbjct: 301 KSQEDLMRIEYFRIEDVKEISDTL--QKHFAIDLPKNQ 336
>Q4QZ04_CHRMO (tr|Q4QZ04) DNA-directed RNA polymerase subunit alpha
OS=Chrysanthemum morifolium GN=rpoA PE=3 SV=1
Length = 335
Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust.
Identities = 269/338 (79%), Positives = 301/338 (89%), Gaps = 4/338 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREK+T+STRTLQWKCVES D+KR +YGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKITVSTRTLQWKCVESAADSKRPFYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK EKI HE+STI GIQES+HEILMNLK +VL+SNLYGTC+ASI V+GPGYVTAQD
Sbjct: 61 CITRAKFEKISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP+VEI+DNTQHIA+LTE I+L IGLQIE+NRGY IK N FQDGSYPID VFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIATLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSY NGN +EILFLEIWTNGSLTPKEALHEASRNLIDL IPFLH +EENL+LE
Sbjct: 181 NANHSIHSYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNLE 238
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQH + LP FTF+ +L KL KN+K++ALK IFIDQSEL P+ YNCLKRSNI+TL DLLN
Sbjct: 239 DNQHMIPLPPFTFYDKLAKLTKNKKKMALKSIFIDQSELPPRIYNCLKRSNIYTLLDLLN 298
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
SQ+DLMK+E+F I+DVK ILGIL EK+F IDLPKNK
Sbjct: 299 NSQDDLMKMEHFHIEDVKQILGIL--EKNFVIDLPKNK 334
>B5AH30_9ROSI (tr|B5AH30) DNA-directed RNA polymerase subunit alpha OS=Gonystylus
bancanus GN=rpoA PE=3 SV=1
Length = 329
Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust.
Identities = 277/325 (85%), Positives = 293/325 (90%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREK +STRTLQWKCVESR D+K LYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 3 MVREKGKVSTRTLQWKCVESRIDSKHLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 62
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+S IAGIQES+HEILMNLK +VL+SNLYGT +A I KGPGYVTAQD
Sbjct: 63 CITRAKSEKIPHEYSIIAGIQESVHEILMNLKEIVLRSNLYGTRNAFICAKGPGYVTAQD 122
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+DNTQHIASLTE IDLCIGLQIERNRGY IK NNF DGSYPID VFMPVR
Sbjct: 123 IILPPSVEIVDNTQHIASLTEPIDLCIGLQIERNRGYGIKTPNNFHDGSYPIDVVFMPVR 182
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N NHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEN HLE
Sbjct: 183 NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENSHLE 242
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
+QHKVTLP F FH +LTKLRK +KEIALKY FIDQSEL P+ YNCLK SNIHTL DLLN
Sbjct: 243 NSQHKVTLPFFPFHDKLTKLRKKKKEIALKYFFIDQSELPPRIYNCLKTSNIHTLFDLLN 302
Query: 301 KSQEDLMKIENFRIDDVKHILGILE 325
KSQEDLMKIE+F +DVK ILGI+E
Sbjct: 303 KSQEDLMKIEHFHREDVKQILGIIE 327
>D3WF78_9ROSI (tr|D3WF78) DNA-directed RNA polymerase subunit alpha OS=Quercus
nigra GN=rpoA PE=3 SV=1
Length = 331
Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust.
Identities = 271/331 (81%), Positives = 291/331 (87%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKV +STRTLQWKCVESR D+ LYYGRFILSPLMKGQADTIGIA+RRALLGEIEGT
Sbjct: 1 MVREKVIVSTRTLQWKCVESRGDSNSLYYGRFILSPLMKGQADTIGIAVRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+STI GIQES+HEILMNLK +VL+SNLYG ASI VKGP YVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIIGIQESVHEILMNLKEIVLRSNLYGISGASICVKGPRYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+I+DNTQHIA+LTE I+L I LQIER+RGYRIK TNN QDGSYPIDAVFMPVR
Sbjct: 121 IILPPSVQIVDNTQHIANLTEPINLYIELQIERDRGYRIKTTNNSQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLI+LFIPFLHAEEE LHLE
Sbjct: 181 NANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIELFIPFLHAEEEKLHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQ KVTLP FT H RL KL KN EIALK IFIDQSEL P+ YNCLK SNIHTL DLLN
Sbjct: 241 NNQQKVTLPFFTCHDRLAKLNKNSTEIALKSIFIDQSELPPRIYNCLKGSNIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFA 331
SQ D MK+++FR +D+KHIL ILEIEK F
Sbjct: 301 NSQTDFMKMKHFRREDIKHILDILEIEKDFV 331
>F5C007_ASCSY (tr|F5C007) DNA-directed RNA polymerase subunit alpha OS=Asclepias
syriaca GN=rpoA PE=3 SV=1
Length = 340
Score = 552 bits (1422), Expect = e-155, Method: Compositional matrix adjust.
Identities = 271/338 (80%), Positives = 297/338 (87%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREK+T+STRTLQWKCVESRT++KRLYYGRFILSPL+K QADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKITVSTRTLQWKCVESRTESKRLYYGRFILSPLLKSQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CIT K +KIPHE+STI GIQES+HEILMNLK +VL+SNLY CDA I V+GP VTAQD
Sbjct: 61 CITHVKFDKIPHEYSTIKGIQESVHEILMNLKEIVLRSNLYEPCDAYICVRGPRSVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
I+LPP+VEI+DNTQHIA+LTE I+LCI L+IERNRGY I+ N DGSYPIDAVFMPVR
Sbjct: 121 IVLPPYVEIVDNTQHIANLTEPINLCIVLKIERNRGYLIQTPQNVPDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EEEN HLE
Sbjct: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENSHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQH+V L FTFH +LTKL KN+KEIALK IFIDQ EL P+ YNCLKRSNI+TL DLLN
Sbjct: 241 NNQHRVPLFPFTFHDKLTKLIKNKKEIALKSIFIDQLELPPRIYNCLKRSNIYTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
SQEDLMKIE+FRI+DVK IL +L EKH AI LPK K
Sbjct: 301 NSQEDLMKIEHFRIEDVKQILVVL--EKHLAIFLPKKK 336
>E3W0W0_9ROSI (tr|E3W0W0) DNA-directed RNA polymerase subunit alpha OS=Castanea
mollissima GN=rpoA PE=3 SV=1
Length = 331
Score = 551 bits (1420), Expect = e-155, Method: Compositional matrix adjust.
Identities = 270/331 (81%), Positives = 290/331 (87%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKV +STRTLQWKCVESR D+ LYYGRFILSPLMKGQADTIGIA+RRALLGEIEGT
Sbjct: 1 MVREKVIVSTRTLQWKCVESRGDSNSLYYGRFILSPLMKGQADTIGIAVRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+STI GIQES+HEILMNLK +VL+SNLYG ASI VKGP YVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIIGIQESVHEILMNLKEIVLRSNLYGISGASICVKGPRYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+I+DNTQHIA+LTE I+L I LQIER+RGYRIK TNN QDGSYPIDAVFMPVR
Sbjct: 121 IILPPSVQIVDNTQHIANLTEPINLYIELQIERDRGYRIKTTNNSQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLI+LFIPFLHAEEE LHLE
Sbjct: 181 NANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIELFIPFLHAEEEKLHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQ KVTLP FT H RL KL KN EI LK IFIDQSEL P+ YNCLK SNIHTL DLLN
Sbjct: 241 NNQQKVTLPFFTCHDRLAKLNKNSTEITLKSIFIDQSELPPRIYNCLKGSNIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFA 331
SQ D MK+++FR +D+KHIL ILEIEK F
Sbjct: 301 NSQTDFMKMKHFRREDIKHILDILEIEKDFV 331
>D3WE20_9ROSA (tr|D3WE20) DNA-directed RNA polymerase subunit alpha OS=Ficus sp.
Moore 315 GN=rpoA PE=3 SV=1
Length = 323
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 267/326 (81%), Positives = 292/326 (89%), Gaps = 3/326 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MV+EKVT+STR LQWKCVESR D+KRLYYGRFIL+PLM+GQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVQEKVTVSTRPLQWKCVESRADSKRLYYGRFILAPLMRGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K EK+PHE+STI GIQES+HEILMNLK +VL+SNLYGT DASI VKGP YVTAQD
Sbjct: 61 CITRVKFEKLPHEYSTIIGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPRYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+DNTQHIA+LTE I LCI LQI+R+RGYRIK NNFQ+GSYPIDAVFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPITLCIELQIKRDRGYRIKTPNNFQNGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSY NGNE QEILFLEIWTNGSLTPKEALHEASRNLIDLFIPF HAEE HLE
Sbjct: 181 NANHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFFHAEE---HLE 237
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQHK TLPLF FHGRL K RK +KE ALKYI+IDQSELTP+ YNCLKRSNI+T DLLN
Sbjct: 238 NNQHKGTLPLFNFHGRLAKPRKTKKEKALKYIYIDQSELTPRVYNCLKRSNINTFLDLLN 297
Query: 301 KSQEDLMKIENFRIDDVKHILGILEI 326
SQE+LMKI++F I+DVKHIL +LEI
Sbjct: 298 NSQEELMKIKDFTIEDVKHILDVLEI 323
>D1L8S0_BRANA (tr|D1L8S0) DNA-directed RNA polymerase subunit alpha OS=Brassica
napus GN=rpoA PE=3 SV=1
Length = 327
Score = 548 bits (1412), Expect = e-154, Method: Compositional matrix adjust.
Identities = 260/325 (80%), Positives = 292/325 (89%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKV +STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVKVSTRTLQWKCVESRRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSE IPH++S I GIQES+HEILMNL +VLKSNLYGT +A I V+GPGY+TA+D
Sbjct: 61 CITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNALICVQGPGYITARD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
I+LPP VEI+DNTQHIA+LTE I+LCIGL+IERNRGY +K +NNF+D SYPIDAVFMPV+
Sbjct: 121 IVLPPSVEIVDNTQHIATLTEPINLCIGLKIERNRGYSLKMSNNFEDRSYPIDAVFMPVQ 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI+LFIPFLH EEE +LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQH+VTLPLF FH RL LRK +KE+A +YIFIDQ EL P+ YNCLK+SNIHTL DLLN
Sbjct: 241 NNQHQVTLPLFPFHNRLVNLRKKKKELAFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILE 325
SQEDL+K+E+F I+DVK IL ILE
Sbjct: 301 NSQEDLIKMEHFHIEDVKKILDILE 325
>D4PBE3_PHODC (tr|D4PBE3) DNA-directed RNA polymerase subunit alpha OS=Phoenix
dactylifera GN=rpoA PE=3 SV=1
Length = 337
Score = 548 bits (1411), Expect = e-154, Method: Compositional matrix adjust.
Identities = 265/338 (78%), Positives = 299/338 (88%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V STRTL+WKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEVVGSTRTLRWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEK+ HE+STI GI+ES+HEIL+NLK ++L+SNLYG DASI V+GP YVTA+D
Sbjct: 61 CITRAKSEKVAHEYSTIVGIEESVHEILLNLKEIILRSNLYGVIDASICVRGPRYVTAKD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP+VEI+D TQHIA+LTE IDLCI LQI+R+RGYR+K NN QDGSYPIDAV MPVR
Sbjct: 121 IISPPYVEIVDTTQHIANLTEPIDLCIELQIKRDRGYRMKSANNSQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE+++ E
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ LPLFTF RLT L+KN+K I LK IFIDQSEL +TYNCLK SNIHTLSDLLN
Sbjct: 241 ENKNRFPLPLFTFQDRLTNLKKNKKGIPLKCIFIDQSELPSRTYNCLKGSNIHTLSDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
SQEDLM+IE FRI+DVK IL L +K+FAIDL KNK
Sbjct: 301 NSQEDLMRIEFFRIEDVKQILDTL--QKYFAIDLSKNK 336
>D3WDG7_BULAR (tr|D3WDG7) DNA-directed RNA polymerase subunit alpha OS=Bulnesia
arborea GN=rpoA PE=3 SV=1
Length = 352
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 262/331 (79%), Positives = 292/331 (88%), Gaps = 2/331 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREK+ +STRTLQWKCVESR D+KRLYYGRF+LSPL KGQADTIGIAMRR LLGEIEGT
Sbjct: 1 MVREKIEVSTRTLQWKCVESRADSKRLYYGRFLLSPLKKGQADTIGIAMRRVLLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
IT AKSE IPHE+S+I G++ES+HEILMNLK +VL+S+LYG CDASI VKGPG VTAQD
Sbjct: 61 SITSAKSENIPHEYSSIVGVEESVHEILMNLKEIVLRSHLYGICDASICVKGPGCVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILP +VEI+DNTQHIA+LTE ID CI LQIERNRGYRIK N FQ+G YPIDAVFMPVR
Sbjct: 121 IILPSYVEIVDNTQHIANLTEPIDFCIRLQIERNRGYRIKTPNQFQEGIYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNG+E QEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE
Sbjct: 181 NANHSIHSYGNGSETQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQ+K TLPLF+FH + +++KNQKEI K IFIDQ ELTPK YNCLKRSNIHTL DLLN
Sbjct: 241 NNQNKYTLPLFSFHDQFNQIKKNQKEIEFKSIFIDQLELTPKIYNCLKRSNIHTLFDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFA 331
+EDLM+IE+FRI+D+ HI IL EK+FA
Sbjct: 301 NRKEDLMRIEHFRIEDINHIFHIL--EKNFA 329
>A9QBD4_ELAOL (tr|A9QBD4) RNA polymerase alpha subunit (Fragment) OS=Elaeis
oleifera GN=rpoA PE=3 SV=1
Length = 339
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 264/338 (78%), Positives = 299/338 (88%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V STRTL+WKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEVVGSTRTLRWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEK+ HE+STI GI+ES+HEIL+NLK ++L+SNLYG DASI V+GP YVTAQD
Sbjct: 61 CITRAKSEKVAHEYSTIVGIEESVHEILLNLKEIILRSNLYGVIDASICVRGPRYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP+VEI+D TQHIA+LTE IDLCI LQI+R+RGYR+K NN QDGSYPIDAV MPVR
Sbjct: 121 IISPPYVEIVDTTQHIANLTEPIDLCIELQIKRDRGYRMKSANNSQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE+++ E
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ LPLFTF RLT L+KN+K I LK IFIDQSEL +TYNCLK SNIHTLSDLL+
Sbjct: 241 ENKNRFPLPLFTFQNRLTNLKKNKKGIPLKCIFIDQSELPSRTYNCLKGSNIHTLSDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
SQEDLM+I+ FRI+DVK IL L +K+FAIDL KNK
Sbjct: 301 NSQEDLMRIKFFRIEDVKQILDTL--QKYFAIDLSKNK 336
>A9QC95_TRACE (tr|A9QC95) RNA polymerase alpha subunit (Fragment) OS=Trachelium
caeruleum GN=rpoA PE=3 SV=1
Length = 337
Score = 544 bits (1402), Expect = e-153, Method: Compositional matrix adjust.
Identities = 263/339 (77%), Positives = 295/339 (87%), Gaps = 4/339 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKV +S RTLQWKCVESR D+KRLYYGRFILSPL+KGQAD IGIAMRRALLGE+EGT
Sbjct: 1 MVREKVIVSNRTLQWKCVESRADSKRLYYGRFILSPLLKGQADIIGIAMRRALLGELEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEK+PHE+ST+ GIQES+HEILMNLK +VL+SNLYGTCDA+I VKGPGYVTAQD
Sbjct: 61 CITRAKSEKLPHEYSTLVGIQESVHEILMNLKEIVLRSNLYGTCDAAICVKGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP+VEIIDNTQHIASLTE I+LCIGLQIERNRGY IK NFQDGSYPIDAVFMPVR
Sbjct: 121 IISPPYVEIIDNTQHIASLTEPIELCIGLQIERNRGYLIKTAKNFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N NHS++SYG GN+K EILFLEIWTNGSLTPKEALHEA+RNLIDLFIPFLH EEENL LE
Sbjct: 181 NVNHSIYSYGTGNDKHEILFLEIWTNGSLTPKEALHEAARNLIDLFIPFLHTEEENLDLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQH + + K++ K+I+LK IFIDQSEL P+ YNCLKRSNI+TL DLLN
Sbjct: 241 DNQHMLPFRPSILPEKFVKIK--NKKISLKSIFIDQSELPPRVYNCLKRSNIYTLLDLLN 298
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
SQEDLMKIE+FR++D+K IL IL EK+F IDLP+NK+
Sbjct: 299 NSQEDLMKIEHFRVEDLKRILDIL--EKNFGIDLPQNKV 335
>D7KR04_ARALL (tr|D7KR04) RNA polymerase alpha subunit OS=Arabidopsis lyrata
subsp. lyrata GN=ARALYDRAFT_893934 PE=3 SV=1
Length = 327
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 259/325 (79%), Positives = 289/325 (88%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKV +STRTLQWKCVES+ D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVKVSTRTLQWKCVESKRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSE IPH++S I GIQES+HEILMNL +VL+SNLYGT +A I V+GPGY+TA+D
Sbjct: 61 CITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEIIDNTQHIA+LTE+IDLCI L+IERNRGY +K +NNF+D SYPIDAVFMPV
Sbjct: 121 IILPPSVEIIDNTQHIATLTETIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVE 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLI+LFIPFLH EEE +LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHVEEETFYLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQH+VTLP F FH RL LRK KE+A +YIFIDQ EL P+ YNCLK+SNIHTL DLLN
Sbjct: 241 NNQHQVTLPFFPFHNRLVNLRKKTKELAFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILE 325
SQEDL+KIE+F ++DVK IL ILE
Sbjct: 301 NSQEDLIKIEHFHVEDVKKILDILE 325
>Q4FG99_9ASPA (tr|Q4FG99) RNA polymerase alpha chain (Fragment) OS=Yucca
schidigera GN=rpoA PE=3 SV=1
Length = 337
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 267/338 (78%), Positives = 296/338 (87%), Gaps = 4/338 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE++ STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEIAASTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEK+PHE+STI GI+ES+HEI +NLK +VL NLYG DASI V+GP YVTAQD
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHEIFINLKEIVL--NLYGVRDASICVRGPRYVTAQD 118
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP VEI+D TQHIA+LTE IDL I LQI+R+RGYRI PTNN QDGSYPIDAV MPVR
Sbjct: 119 IISPPSVEIVDTTQHIANLTEPIDLRIELQIKRDRGYRINPTNNSQDGSYPIDAVSMPVR 178
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE ++H E
Sbjct: 179 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEGDIHFE 238
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ TLPLFTF RLT L+KN+K I LK IFIDQ EL P+TYNCLKRSNIHTL DLL+
Sbjct: 239 ENKNRFTLPLFTFQNRLTNLKKNKKGIPLKCIFIDQLELPPRTYNCLKRSNIHTLLDLLS 298
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
SQEDLM+IE FR +DVK IL L +KHFAI+LPKNK
Sbjct: 299 NSQEDLMRIEYFRTEDVKQILDTL--QKHFAINLPKNK 334
>C3KEL6_CERDE (tr|C3KEL6) DNA-directed RNA polymerase subunit alpha 2
OS=Ceratophyllum demersum GN=rpoA PE=3 SV=1
Length = 337
Score = 541 bits (1395), Expect = e-152, Method: Compositional matrix adjust.
Identities = 261/337 (77%), Positives = 300/337 (89%), Gaps = 2/337 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+VTISTRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGI+MRRALLGEIEGT
Sbjct: 1 MVREEVTISTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGISMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +K+ HE+STI GI+ES+HEILMNLK +VL+SNLYGT DASI V+GP VTAQD
Sbjct: 61 CITRAKFDKVTHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTLDASICVRGPRSVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP VEI+D TQHIA+LTE IDLCIGLQIER+RGYR+K NN+QDGSYPID VFMPVR
Sbjct: 121 IISPPSVEIVDTTQHIANLTEPIDLCIGLQIERDRGYRLKTPNNYQDGSYPIDTVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNG EKQEILFLEIWTNGSLTPKEAL+EASRNLI+LFIPFLHAEE+ + LE
Sbjct: 181 NANHSIHSYGNGTEKQEILFLEIWTNGSLTPKEALYEASRNLINLFIPFLHAEEQEILLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
+++ T+PLFTFH L L+KN+K IALK IFIDQ EL +TYNCLKRSNIHTL DLL+
Sbjct: 241 DSENISTVPLFTFHNELANLKKNKKGIALKCIFIDQLELPSRTYNCLKRSNIHTLFDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
S+EDLM+IE+FR++DVK IL IL +K+FA++LPK+
Sbjct: 301 NSKEDLMRIEHFRVEDVKQILDIL--QKNFAMNLPKD 335
>B8R4C0_TRISU (tr|B8R4C0) DNA-directed RNA polymerase subunit alpha OS=Trifolium
subterraneum GN=rpoA PE=3 SV=1
Length = 337
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 264/336 (78%), Positives = 294/336 (87%), Gaps = 4/336 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+REKV +STRTL WKCVESR D+KRLYYGRFILSPLMKGQADTIGI MRR LLGEIEGT
Sbjct: 1 MIREKVKVSTRTLLWKCVESRVDSKRLYYGRFILSPLMKGQADTIGITMRRILLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+STI GIQESIHEILMNLK +VL+SNLYGT DASI KGPGYVTA+D
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESIHEILMNLKQIVLRSNLYGTRDASICFKGPGYVTARD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDA--VFMP 178
IILPP VEI+DNTQHIA+LTE I+LCI LQIER RGYR K +N QDGSY ID VFMP
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINLCIELQIERARGYRKKTIDNIQDGSYTIDVDPVFMP 180
Query: 179 VRNANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLH 238
V +AN+S+HSY N NEKQEILFLEIWTNGSLTPKEAL+EA+RNLIDLFIPFLHAEEEN H
Sbjct: 181 VIHANYSIHSYLNANEKQEILFLEIWTNGSLTPKEALYEAARNLIDLFIPFLHAEEENFH 240
Query: 239 LEINQHKVTLPLFTFHGRLT--KLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLS 296
E NQHKVTLPLF FH RL KLRKN+K+I LK +FIDQ EL P+ YNCLK+S+IHTL
Sbjct: 241 FENNQHKVTLPLFAFHDRLVKDKLRKNKKQIELKSVFIDQLELPPRIYNCLKKSDIHTLY 300
Query: 297 DLLNKSQEDLMKIENFRIDDVKHILGILEIEKHFAI 332
LLNKSQEDLMKIE+F ++DVK+IL IL+I++HFA+
Sbjct: 301 QLLNKSQEDLMKIEDFSVEDVKNILNILQIDQHFAL 336
>Q4FGA0_TYPLA (tr|Q4FGA0) RNA polymerase alpha chain (Fragment) OS=Typha
latifolia GN=rpoA PE=3 SV=1
Length = 339
Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust.
Identities = 262/338 (77%), Positives = 297/338 (87%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V STRT+QWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEVAGSTRTIQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSE++PHE+STI GI+ES+HEIL+NLK +VL+SNLYG DASI V+GP YVTAQD
Sbjct: 61 CITRAKSERVPHEYSTIIGIEESVHEILLNLKEIVLRSNLYGVRDASICVRGPRYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D TQHIA+LTE IDL I LQI+R+RGYR++PTNN QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDPTQHIANLTEPIDLYIELQIKRDRGYRMEPTNNSQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE+++ E
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDINFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ TLP TF RLT L+KN+K I L IFIDQ EL +TYNCLKRSNIHTL DLL+
Sbjct: 241 ENKNRFTLPFLTFQDRLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRSNIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
QEDLM+IE R++DVK IL L +K+FAIDLPKNK
Sbjct: 301 NGQEDLMRIEYLRMEDVKQILDTL--QKNFAIDLPKNK 336
>G3ETS9_CUCME (tr|G3ETS9) RNA polymerase alpha subunit OS=Cucumis melo subsp.
melo GN=rpoA PE=4 SV=1
Length = 333
Score = 538 bits (1387), Expect = e-151, Method: Compositional matrix adjust.
Identities = 269/333 (80%), Positives = 298/333 (89%), Gaps = 2/333 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREK+ +STRTL+WKCVESR D+KRLYYGRFILSPLMKGQ DTIGIAMR+ALLGEIEGT
Sbjct: 1 MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+STI GIQES+HEILMNLK +VL+SNLYGT DASI VKGPG VTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+DNTQHIA+LTE I+ CI L+IERNRGY I+ NNFQD SYP+DA+FMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE--ENLH 238
N NHS+HSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE EN H
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 240
Query: 239 LEINQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDL 298
+ N+ KVTLPLFTFH +L KLRK +KE ALKYIFIDQSEL P+ YNCLKR NIHTL DL
Sbjct: 241 FKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLFDL 300
Query: 299 LNKSQEDLMKIENFRIDDVKHILGILEIEKHFA 331
LN S ++LMKI++FRI+DVKHIL ILE+EK+FA
Sbjct: 301 LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA 333
>F6MHQ1_9ASTR (tr|F6MHQ1) DNA-directed RNA polymerase subunit alpha OS=Ageratina
adenophora GN=rpoA PE=3 SV=1
Length = 335
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 274/338 (81%), Positives = 303/338 (89%), Gaps = 4/338 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREK+T+STRTLQWKCVES D+KRL YGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKITVSTRTLQWKCVESAADSKRLLYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKI HE+STI GIQES++EILMNLK +VL+SNLYGTC+ASI V+GPGYVTAQD
Sbjct: 61 CITRAKSEKISHEYSTIMGIQESVNEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP+VEI+DNTQHIASLTE I+L IGLQIE+NRGY IK N FQDGSYPID VFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSY NGN +EILFLEIWTNGSLTPKEALHEASRNLIDL IPFLH +EENL+LE
Sbjct: 181 NANHSIHSYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNLE 238
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQH V LP FTF+ +L KL+KN+K+ ALK IFIDQSEL P+ YNCLKRSNI+TL DLLN
Sbjct: 239 DNQHIVPLPPFTFYDKLAKLKKNKKKKALKSIFIDQSELPPRIYNCLKRSNIYTLLDLLN 298
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
SQEDLMK+E+FRI+DVK ILGIL EK+F IDLPKNK
Sbjct: 299 NSQEDLMKMEHFRIEDVKQILGIL--EKNFVIDLPKNK 334
>F6KG62_JACVU (tr|F6KG62) DNA-directed RNA polymerase subunit alpha OS=Jacobaea
vulgaris GN=rpoA PE=3 SV=1
Length = 335
Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust.
Identities = 271/338 (80%), Positives = 302/338 (89%), Gaps = 4/338 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREK+T+STRTLQWKCVES D+KRL+YGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKITVSTRTLQWKCVESAADSKRLFYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CIT AKSEKI HE+STI GIQES+HEILMNLK +VL+SNLYGTC+ASI V+GPGYVTAQD
Sbjct: 61 CITCAKSEKISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP+VEI+DNTQHIASLTE I+L IGLQIE+NRGY IK N FQDGSYPID VFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGSYPIDPVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSY NGN +EILFLEIWTNGSLTPKEALHEASRNLIDL IPFLH +EENL+LE
Sbjct: 181 NANHSIHSYENGN--KEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHTKEENLNLE 238
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQH V LP FTF+ +L KL K +K++ALK IFIDQSEL P+ YNCLKRSNI+TL DLLN
Sbjct: 239 DNQHMVPLPPFTFYEKLAKLTKKKKKMALKSIFIDQSELPPRIYNCLKRSNIYTLLDLLN 298
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
SQEDLMK+E+FRI+DVK ILG+L EK+F IDLPKN+
Sbjct: 299 NSQEDLMKMEHFRIEDVKQILGVL--EKNFVIDLPKNQ 334
>D5MAM2_PEA (tr|D5MAM2) DNA-directed RNA polymerase subunit alpha 1 OS=Pisum
sativum GN=rpoA PE=3 SV=1
Length = 334
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 271/335 (80%), Positives = 297/335 (88%), Gaps = 5/335 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+REK+ +ST+TLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGI MRR LLGEIEGT
Sbjct: 1 MIREKLKVSTQTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGITMRRILLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+STI GIQESIHEILMNLK +VL+SNLYGT +ASI KGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLRSNLYGTREASICFKGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILP VE+IDNTQHIA+LTE I+LCI LQIER RGYRIK NN QDGSY IDAVFMPVR
Sbjct: 121 IILPS-VEVIDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVR 179
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSY NGN+KQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEENL+ E
Sbjct: 180 NANHSIHSYVNGNQKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFE 239
Query: 241 INQHKVTLPLFTF--HGRLT--KLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLS 296
NQHK+TLPLFTF H R KLRKNQKEI LK IFIDQ EL P+ YNCLK+SNIHT+
Sbjct: 240 NNQHKMTLPLFTFHDHDRFVKDKLRKNQKEITLKSIFIDQLELPPRIYNCLKKSNIHTVL 299
Query: 297 DLLNKSQEDLMKIENFRIDDVKHILGILEIEKHFA 331
+LLNKSQEDLMKIE+FR++D+K IL IL+IE HF
Sbjct: 300 ELLNKSQEDLMKIEHFRVEDLKFILNILQIENHFV 334
>B0FIU7_9ASTE (tr|B0FIU7) RNA polymerase alpha subunit (Fragment) OS=Cuscuta
lupuliformis GN=rpoA PE=3 SV=1
Length = 335
Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust.
Identities = 260/337 (77%), Positives = 292/337 (86%), Gaps = 4/337 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVT+STRTLQWKCVESRTD+KRLYYGRFILSPLMKGQADTIGIA+RRALL EIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIALRRALLAEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
ITR K HE+STIAGIQES+HEILMNLK +VL+SNLYGTCDASI +KGPGYVTA+D
Sbjct: 61 RITRVKFANASHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISIKGPGYVTAED 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VE++D+TQHIA L E IDLCIGL+IERNRGY +K NF+DGSYPIDAVFMPV+
Sbjct: 121 IILPPHVEVVDSTQHIAWLMEPIDLCIGLKIERNRGYFLKTHANFEDGSYPIDAVFMPVQ 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSY GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH E+ENLHLE
Sbjct: 181 NANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEKENLHLE 238
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
+ L FT + ++ KLRKN+K++AL+ +FIDQ E P YNCLK+SNI TL DLLN
Sbjct: 239 DADRTIPLSPFTVYDKVAKLRKNKKKLALESLFIDQLEFPPNIYNCLKKSNIFTLLDLLN 298
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
SQEDLMKIE+FR++DVK ILGIL KHFA+DLPKN
Sbjct: 299 NSQEDLMKIEHFRLEDVKQILGIL--GKHFALDLPKN 333
>D3J8J5_VIGRA (tr|D3J8J5) DNA-directed RNA polymerase subunit alpha OS=Vigna
radiata GN=rpoA PE=3 SV=1
Length = 333
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 258/333 (77%), Positives = 291/333 (87%), Gaps = 2/333 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MV+EK+ STRTLQWKCVESR ++KRLYYGRFILSPLMKGQADTIGIA+RR LLGEIEGT
Sbjct: 1 MVQEKLRFSTRTLQWKCVESRIESKRLYYGRFILSPLMKGQADTIGIAIRRILLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR KSEKIPHE+STI GI+ES+HEI MNLK +VLKSN+YGT DASI KGPGY+TAQD
Sbjct: 61 CITRVKSEKIPHEYSTIIGIEESVHEIFMNLKEIVLKSNMYGTQDASISFKGPGYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+DN QHIA++TE ++ CI L+IERNRGYRIK NFQD SY IDA FMPVR
Sbjct: 121 IILPPSVEIVDNRQHIANVTEPVNFCIELKIERNRGYRIKTLKNFQDESYDIDARFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+HSY NGNEKQEILFLEIWTNGSLTPKEAL+EAS+NLIDLFIPFLHAEEEN +LE
Sbjct: 181 NVNYSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASQNLIDLFIPFLHAEEENFNLE 240
Query: 241 INQHKVTLPLFTFHGRLT--KLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDL 298
N+ KVTLPLFTFH L KLRKN+KEIALK IFIDQ EL P+ YNCLKRSNIHTL +L
Sbjct: 241 KNKDKVTLPLFTFHDILVKDKLRKNKKEIALKSIFIDQLELPPRIYNCLKRSNIHTLLEL 300
Query: 299 LNKSQEDLMKIENFRIDDVKHILGILEIEKHFA 331
LN SQEDL+KIE+FR++D K IL IL+I+K+F
Sbjct: 301 LNNSQEDLLKIEHFRVEDGKSILDILKIQKYFT 333
>G1FBF7_9ARAE (tr|G1FBF7) RNA polymerase alpha subunit OS=Wolffiella lingulata
GN=rpoA PE=4 SV=1
Length = 339
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 253/338 (74%), Positives = 295/338 (87%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE++ STRTLQWKCVESR D+KRL+YGRF+LSPLMKGQ DTIGIAMRRALL E+EGT
Sbjct: 1 MVREEIAASTRTLQWKCVESRVDSKRLHYGRFVLSPLMKGQGDTIGIAMRRALLEEMEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK EK+PHE+STI GI+ES+HEILMNLK +VL+SNLYGT DASI VKGP +TA+D
Sbjct: 61 CITRAKFEKVPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPKNITAED 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
I+LP VEI+D TQHIA+LTE DLCIGL+I+R+RGYR++ TN+ QD SYPIDAVFMPVR
Sbjct: 121 ILLPASVEIVDTTQHIATLTEPRDLCIGLEIQRDRGYRMRSTNDSQDASYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS++SYGNGNEKQEILF+EIWTNGSLTPKEAL EASRNLIDLFIPFLHAEE++++LE
Sbjct: 181 NANHSIYSYGNGNEKQEILFIEIWTNGSLTPKEALQEASRNLIDLFIPFLHAEEKDINLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+ + TLPLFTFH +L L KN+KEIALK IFIDQ EL +TYNCLKRSNIHTLSDLL+
Sbjct: 241 ENKSRFTLPLFTFHDKLANLTKNKKEIALKCIFIDQLELPSRTYNCLKRSNIHTLSDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
SQEDL KIE R +D++ I+ IL +KHF I+L KNK
Sbjct: 301 NSQEDLRKIEYLRREDIQQIVDIL--QKHFTINLAKNK 336
>D5HQ58_ONCHC (tr|D5HQ58) DNA-directed RNA polymerase subunit alpha OS=Oncidium
Gower Ramsey GN=rpoA PE=3 SV=1
Length = 339
Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust.
Identities = 257/338 (76%), Positives = 290/338 (85%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V STRTLQWKCVESR D+KRLYYGRF+LSPLMKGQADTIGIAMRRALLG IEGT
Sbjct: 1 MVREEVAGSTRTLQWKCVESRVDSKRLYYGRFVLSPLMKGQADTIGIAMRRALLGRIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRA SE + HE+S IAGI+ES+H+IL+NLK +VLKSNLYG DASI V+GP Y+TAQD
Sbjct: 61 CITRATSENVLHEYSMIAGIEESVHDILINLKEIVLKSNLYGVRDASICVRGPKYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP V+I+D TQHIA+LTE IDLCI LQI+R RGY +K TN DGSYPID V MPVR
Sbjct: 121 IISPPSVKIVDTTQHIANLTEPIDLCIELQIKRGRGYHMKSTNESHDGSYPIDIVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDL IPFLHAEEE+++LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEEEDMNLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+ + LPLF+F R T L+KN+K I L IFIDQSEL+ +TYNCLKRSNIHTL DLLN
Sbjct: 241 ENEKRWNLPLFSFQDRFTNLKKNKKGIPLTCIFIDQSELSSRTYNCLKRSNIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
SQEDLMK+E FRI+DVK ILG L +KHFAI+LPK K
Sbjct: 301 HSQEDLMKMEYFRIEDVKQILGTL--QKHFAINLPKKK 336
>Q4FGA2_NUPAD (tr|Q4FGA2) RNA polymerase alpha chain (Fragment) OS=Nuphar advena
GN=rpoA PE=3 SV=1
Length = 336
Score = 527 bits (1358), Expect = e-148, Method: Compositional matrix adjust.
Identities = 253/338 (74%), Positives = 295/338 (87%), Gaps = 5/338 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V +STRTLQWKCVESR D+KRLYYGRF+LSPLMKGQADTIGIAMRRALLGE+EGT
Sbjct: 1 MVREEVPVSTRTLQWKCVESRADSKRLYYGRFVLSPLMKGQADTIGIAMRRALLGELEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKS+K+PHE+STI GI+ES+HEILMNLK +V +S+LYGT DASI V+GP +VTAQD
Sbjct: 61 CITRAKSDKVPHEYSTIVGIEESVHEILMNLKKIVFRSDLYGTLDASICVRGPRHVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP VEI+D TQHIA LTE +DLCI L+IER RGY ++ NN+QDGSYPIDAV MPVR
Sbjct: 121 IISPPSVEIVDTTQHIAILTEPVDLCIELKIERGRGYCMRTPNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+++++E
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEQDINIE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N + T+P FTFH L ++ +EI LK IFIDQSEL P+TYNCLK+SNIHTL +LL+
Sbjct: 241 DNLKRATVPFFTFHDGLDNMK---REIILKRIFIDQSELPPRTYNCLKKSNIHTLLNLLS 297
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
KSQEDLM+IE+FR++DVK I IL +K F IDL KNK
Sbjct: 298 KSQEDLMRIEHFRVEDVKQIFDIL--QKGFTIDLLKNK 333
>B0FIU8_CUSRE (tr|B0FIU8) RNA polymerase alpha subunit (Fragment) OS=Cuscuta
reflexa GN=rpoA PE=3 SV=1
Length = 335
Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust.
Identities = 259/337 (76%), Positives = 290/337 (86%), Gaps = 4/337 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVT+STRTLQWKCVESRTD+KRLYYGRFILSPL KGQADTIGIAMRRALL EIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLTKGQADTIGIAMRRALLAEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
ITR K HE+STIAGIQES+HEILMNLK +VL+SNLYGTCDASI +KGPGYVTA+D
Sbjct: 61 RITRVKFANTSHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISIKGPGYVTAED 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D+TQHIA LTE I+ IGL+IERN GY IK NF+DGSYPIDA+FMPVR
Sbjct: 121 IILPPHVEIVDSTQHIAWLTEPINFFIGLKIERNHGYFIKTHANFEDGSYPIDALFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS++SY GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EEENLHLE
Sbjct: 181 NANHSINSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLE 238
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
H + L FT + ++ KLRKN+K+++L+ IFIDQ E PK YNCLK+SNI TL DLLN
Sbjct: 239 DADHTIPLSPFTVYDKVAKLRKNKKKLSLESIFIDQLEFPPKIYNCLKKSNIFTLLDLLN 298
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
SQEDL+KIE+F ++DVK ILGIL KHFA+DLPKN
Sbjct: 299 NSQEDLIKIEHFHLEDVKQILGIL--GKHFALDLPKN 333
>D5MAQ6_LATSA (tr|D5MAQ6) DNA-directed RNA polymerase subunit alpha OS=Lathyrus
sativus GN=rpoA PE=3 SV=1
Length = 335
Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust.
Identities = 262/335 (78%), Positives = 293/335 (87%), Gaps = 4/335 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+REK+ +ST+TLQWKCVESR D+KRLYYGRFILSPL+KGQADTIGIAMRR LLGEI+GT
Sbjct: 1 MIREKLKVSTKTLQWKCVESRVDSKRLYYGRFILSPLLKGQADTIGIAMRRILLGEIDGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+ST+ GIQESIHEILMNLK +VL+SNLYGT +ASI KGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTVVGIQESIHEILMNLKEIVLRSNLYGTREASISFKGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VE+ID TQHIA+LTE I+LCI LQIER RGYRIK NN QDGSY IDAVFMPVR
Sbjct: 121 IILPPSVEVIDKTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NAN+S+HSY NGNEKQ+ILFLEIWTNGS TPKEAL+EASRNLIDLFIPFLHAEEEN +LE
Sbjct: 181 NANYSIHSYVNGNEKQDILFLEIWTNGSFTPKEALYEASRNLIDLFIPFLHAEEENFNLE 240
Query: 241 INQHKVTLPLFTF--HGRLT--KLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLS 296
NQHK+T PLFTF H R KL QKEI LK IFIDQ EL P+ YNCLK+SNIHT+
Sbjct: 241 NNQHKMTWPLFTFHDHDRFVKDKLTNTQKEITLKSIFIDQLELPPRIYNCLKKSNIHTVF 300
Query: 297 DLLNKSQEDLMKIENFRIDDVKHILGILEIEKHFA 331
+ LNKSQEDLMKIE+FR++D+K+IL IL+IE HF
Sbjct: 301 EFLNKSQEDLMKIEHFRVEDLKNILNILKIENHFV 335
>D3WCN7_PHOSE (tr|D3WCN7) DNA-directed RNA polymerase subunit alpha
OS=Phoradendron serotinum GN=rpoA PE=3 SV=1
Length = 326
Score = 518 bits (1334), Expect = e-145, Method: Compositional matrix adjust.
Identities = 251/333 (75%), Positives = 293/333 (87%), Gaps = 7/333 (2%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVR+KVTI+T+TL+WKCV SR DNKR YYGRFILSPL+KGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVRDKVTIATQTLKWKCVASRVDNKRFYYGRFILSPLIKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKS++IPHE+STI GIQES+H+IL+NLK +VL+SNLYGTC+ASIY+KGP Y+TAQD
Sbjct: 61 CITRAKSDQIPHEYSTIRGIQESVHDILINLKEIVLRSNLYGTCNASIYIKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP+VEIID+TQ IASLTE ID IGLQIE+NRGYRI N Q+G++ I+A+FMPVR
Sbjct: 121 IILPPYVEIIDHTQIIASLTEQIDFGIGLQIEKNRGYRIITPKNLQEGNFSIEAIFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+H+Y NEK EILFLEIWTNGSLTPKEALHEA+RNLIDLFIPFLH ++E LH+E
Sbjct: 181 NANHSIHNY---NEKLEILFLEIWTNGSLTPKEALHEAARNLIDLFIPFLHVKKEKLHVE 237
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQHK L LFTFH RL KLRK +++IALK IFIDQSEL+P+ YNCLK SNI + DLLN
Sbjct: 238 DNQHK--LSLFTFHDRLQKLRKTKEKIALKSIFIDQSELSPRIYNCLKSSNIQNILDLLN 295
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAID 333
K++EDLMKIE+FRI+D+KHI GILE+ H ID
Sbjct: 296 KNREDLMKIEHFRIEDLKHIWGILEM--HLEID 326
>C7SM26_9POAL (tr|C7SM26) DNA-directed RNA polymerase subunit alpha OS=Joinvillea
plicata GN=rpoA PE=3 SV=1
Length = 339
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 253/338 (74%), Positives = 288/338 (85%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V S RTLQWKCVESR D+KRLYYGRFILSPL+KGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREEVAGSNRTLQWKCVESRVDSKRLYYGRFILSPLIKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKS K+PHE+STI GI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKSGKVPHEYSTIVGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP VEI+D TQHIA+LTE IDLCI LQI+R+RGY +P N QDGSYPIDAV MPVR
Sbjct: 121 IISPPSVEIVDTTQHIANLTEPIDLCIELQIKRDRGYHTEPRKNSQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S++S GN NEK EILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE+ + E
Sbjct: 181 NVNYSIYSCGNENEKYEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEEDTNFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ TLPL TF RLT L+KN+K I L IFIDQ EL +TYNCLKRSNIHTL DLL+
Sbjct: 241 ENKNRFTLPLLTFQKRLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRSNIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
KS+EDLMKIENFR++D K IL L +KH ++DLPKNK
Sbjct: 301 KSEEDLMKIENFRMEDGKQILDTL--QKHLSMDLPKNK 336
>B0FIU6_CUSJA (tr|B0FIU6) RNA polymerase alpha subunit (Fragment) OS=Cuscuta
japonica GN=rpoA PE=3 SV=1
Length = 332
Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust.
Identities = 252/337 (74%), Positives = 283/337 (83%), Gaps = 7/337 (2%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MV EKVT L+W+CVESRTD+KRLYYGRFILSPLMKGQADTIGIA+RRALL EIEGT
Sbjct: 1 MVLEKVTAPAPKLEWECVESRTDSKRLYYGRFILSPLMKGQADTIGIALRRALLAEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
ITR K HE+STIAGIQES+HEILMNLK +VL+SNLYGTCDASI KGPGYVTA+D
Sbjct: 61 RITRVKFANASHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASISFKGPGYVTAED 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D+TQHIA LTE IDLCIGL+IERNRGY IK NF+DGSYPIDAVFMPV+
Sbjct: 121 IILPPHVEIVDSTQHIAWLTEPIDLCIGLKIERNRGYFIKTHANFEDGSYPIDAVFMPVQ 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSY GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH E+ENL LE
Sbjct: 181 NANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEKENLPLE 238
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
H + L FT + K+ KN+K+++L+ +FIDQ E PK YNCLK+SNI TL DLLN
Sbjct: 239 DADHTIPLSPFTVY---YKVAKNKKKLSLESLFIDQLEFPPKIYNCLKKSNIFTLLDLLN 295
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
SQEDL+KIE+FR++DVK IL IL KHFA+DLPKN
Sbjct: 296 NSQEDLIKIEHFRLEDVKQILAIL--GKHFALDLPKN 330
>Q7H6I8_HORMU (tr|Q7H6I8) DNA-directed RNA polymerase subunit alpha OS=Hordeum
murinum GN=rpoA PE=3 SV=1
Length = 339
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q7H6F7_PSAFR (tr|Q7H6F7) DNA-directed RNA polymerase subunit alpha 2
OS=Psathyrostachys fragilis GN=rpoA PE=3 SV=1
Length = 339
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q7GEC8_HORMG (tr|Q7GEC8) DNA-directed RNA polymerase subunit alpha OS=Hordeum
murinum subsp. glaucum GN=rpoA PE=3 SV=1
Length = 339
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q539W3_9POAL (tr|Q539W3) DNA-directed RNA polymerase subunit alpha 3
OS=Psathyrostachys lanuginosa GN=rpoA PE=3 SV=1
Length = 339
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q539V9_PSAFR (tr|Q539V9) DNA-directed RNA polymerase subunit alpha
OS=Psathyrostachys fragilis subsp. villosus GN=rpoA PE=3
SV=1
Length = 339
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q539V7_9POAL (tr|Q539V7) DNA-directed RNA polymerase subunit alpha
OS=Psathyrostachys huashanica GN=rpoA PE=3 SV=1
Length = 339
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q539V5_PSARU (tr|Q539V5) DNA-directed RNA polymerase subunit alpha
OS=Psathyrostachys rupestris subsp. rupestris GN=rpoA
PE=3 SV=1
Length = 339
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>P92903_9POAL (tr|P92903) DNA-directed RNA polymerase subunit alpha OS=Hordeum
brevisubulatum GN=rpoA PE=3 SV=1
Length = 339
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>E3NYY2_9POAL (tr|E3NYY2) DNA-directed RNA polymerase subunit alpha OS=Leymus
secalinus GN=rpoA PE=3 SV=1
Length = 339
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>E3NYX9_9POAL (tr|E3NYX9) DNA-directed RNA polymerase subunit alpha OS=Leymus
mollis GN=rpoA PE=3 SV=1
Length = 339
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>E3NYX6_9POAL (tr|E3NYX6) DNA-directed RNA polymerase subunit alpha OS=Leymus
sabulosus GN=rpoA PE=3 SV=1
Length = 339
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>E3NYX0_9POAL (tr|E3NYX0) DNA-directed RNA polymerase subunit alpha OS=Leymus
racemosus GN=rpoA PE=3 SV=1
Length = 339
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>E3NYW4_LEYCH (tr|E3NYW4) DNA-directed RNA polymerase subunit alpha OS=Leymus
chinensis GN=rpoA PE=3 SV=1
Length = 339
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>E2DRE8_9POAL (tr|E2DRE8) DNA-directed RNA polymerase subunit alpha OS=Leymus
angustus GN=rpoA PE=3 SV=1
Length = 339
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>E2DRE5_9POAL (tr|E2DRE5) DNA-directed RNA polymerase subunit alpha OS=Leymus
paboanus GN=rpoA PE=3 SV=1
Length = 339
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>E2DRE2_9POAL (tr|E2DRE2) DNA-directed RNA polymerase subunit alpha OS=Leymus
karelinii GN=rpoA PE=3 SV=1
Length = 339
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>E2DRD9_9POAL (tr|E2DRD9) DNA-directed RNA polymerase subunit alpha OS=Leymus
akmolinensis GN=rpoA PE=3 SV=1
Length = 339
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>E2DRD6_9POAL (tr|E2DRD6) DNA-directed RNA polymerase subunit alpha OS=Leymus
pseudoracemosus GN=rpoA PE=3 SV=1
Length = 339
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>E2DRD3_9POAL (tr|E2DRD3) DNA-directed RNA polymerase subunit alpha OS=Leymus
cinereus GN=rpoA PE=3 SV=1
Length = 339
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>E2DRD0_9POAL (tr|E2DRD0) DNA-directed RNA polymerase subunit alpha OS=Leymus
salinus GN=rpoA PE=3 SV=1
Length = 339
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>E2DRC7_LYMAR (tr|E2DRC7) DNA-directed RNA polymerase subunit alpha OS=Leymus
arenarius GN=rpoA PE=3 SV=1
Length = 339
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>E2DRC1_9POAL (tr|E2DRC1) DNA-directed RNA polymerase subunit alpha OS=Leymus
erianthus GN=rpoA PE=3 SV=1
Length = 339
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q7H6I7_9POAL (tr|Q7H6I7) DNA-directed RNA polymerase subunit alpha OS=Hordeum
pusillum GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 283/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VE +D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVETVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q7GEC7_HORMA (tr|Q7GEC7) DNA-directed RNA polymerase subunit alpha OS=Hordeum
marinum subsp. gussoneanum GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 283/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VE +D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVETVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q7GEC4_9POAL (tr|Q7GEC4) DNA-directed RNA polymerase subunit alpha OS=Hordeum
erectifolium GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 283/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VE +D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVETVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>P92900_9POAL (tr|P92900) DNA-directed RNA polymerase subunit alpha OS=Hordeum
brachyantherum GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 283/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VE +D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVETVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>E9L8G8_9POAL (tr|E9L8G8) DNA-directed RNA polymerase subunit alpha
OS=Stenostachys gracilis GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 283/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VE +D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVETVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>E9L8G3_9POAL (tr|E9L8G3) DNA-directed RNA polymerase subunit alpha OS=Elymus
enysii GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 283/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VE +D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVETVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q6YLW5_9POAL (tr|Q6YLW5) DNA-directed RNA polymerase subunit alpha 1
OS=Dasypyrum villosum GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFWSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q7H6J3_AUSVE (tr|Q7H6J3) DNA-directed RNA polymerase subunit alpha 2
OS=Australopyrum velutinum GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q7H6I6_9POAL (tr|Q7H6I6) DNA-directed RNA polymerase subunit alpha 2
OS=Dasypyrum villosum GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q7H6I3_9POAL (tr|Q7H6I3) DNA-directed RNA polymerase subunit alpha OS=Elymus
ciliaris GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q7H6I2_9POAL (tr|Q7H6I2) DNA-directed RNA polymerase subunit alpha OS=Elymus
elymoides GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q7H6I1_9POAL (tr|Q7H6I1) DNA-directed RNA polymerase subunit alpha OS=Elymus
glaucus GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q7H6H8_9POAL (tr|Q7H6H8) DNA-directed RNA polymerase subunit alpha OS=Elymus
lanceolatus GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q7H6H6_9POAL (tr|Q7H6H6) DNA-directed RNA polymerase subunit alpha OS=Elymus
trachycaulus GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q7H6H1_9POAL (tr|Q7H6H1) DNA-directed RNA polymerase subunit alpha OS=Elymus
wawawaiensis GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q7H6G9_9POAL (tr|Q7H6G9) DNA-directed RNA polymerase subunit alpha OS=Eremopyrum
bonaepartis GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q7H6G7_9POAL (tr|Q7H6G7) DNA-directed RNA polymerase subunit alpha 2
OS=Eremopyrum orientale GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q7H6G6_9POAL (tr|Q7H6G6) DNA-directed RNA polymerase subunit alpha OS=Henrardia
persica GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q7H6G5_9POAL (tr|Q7H6G5) DNA-directed RNA polymerase subunit alpha
OS=Peridictyon sanctum GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q7H6G4_9POAL (tr|Q7H6G4) DNA-directed RNA polymerase subunit alpha
OS=Pseudoroegneria strigosa GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q7H6G2_9POAL (tr|Q7H6G2) DNA-directed RNA polymerase subunit alpha
OS=Pseudoroegneria tauri subsp. libanotica GN=rpoA PE=3
SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q7GED7_9POAL (tr|Q7GED7) DNA-directed RNA polymerase subunit alpha OS=Eremopyrum
triticeum GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q7GEC5_9POAL (tr|Q7GEC5) DNA-directed RNA polymerase subunit alpha
OS=Australopyrum retrofractum GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q6USB6_ELYRE (tr|Q6USB6) DNA-directed RNA polymerase subunit alpha OS=Elymus
repens GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q3Y514_9POAL (tr|Q3Y514) DNA-directed RNA polymerase subunit alpha OS=Elymus
abolinii GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q3Y513_9POAL (tr|Q3Y513) DNA-directed RNA polymerase subunit alpha OS=Elymus
caucasicus GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>P92906_LOPEL (tr|P92906) DNA-directed RNA polymerase subunit alpha 1
OS=Lophopyrum elongatum GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>E9L8G7_9POAL (tr|E9L8G7) DNA-directed RNA polymerase subunit alpha OS=Elymus
sibiricus GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>E9L8G6_9POAL (tr|E9L8G6) DNA-directed RNA polymerase subunit alpha OS=Elymus
semicostatus GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>E9L8G5_ELYCA (tr|E9L8G5) DNA-directed RNA polymerase subunit alpha 1 OS=Elymus
canadensis GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q7GED2_9POAL (tr|Q7GED2) DNA-directed RNA polymerase subunit alpha
OS=Amblyopyrum muticum GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q7GED1_TRIMO (tr|Q7GED1) DNA-directed RNA polymerase subunit alpha OS=Triticum
monococcum GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q6YLW9_9POAL (tr|Q6YLW9) DNA-directed RNA polymerase subunit alpha OS=Aegilops
markgrafii GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q6YLW3_9POAL (tr|Q6YLW3) DNA-directed RNA polymerase subunit alpha OS=Secale
montanum GN=rpoA PE=3 SV=1
Length = 339
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q539V4_9POAL (tr|Q539V4) DNA-directed RNA polymerase subunit alpha 1
OS=Psathyrostachys caduca GN=rpoA PE=3 SV=1
Length = 339
Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EK+ IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKNLPIDLLKNKL 337
>Q3Y512_9POAL (tr|Q3Y512) DNA-directed RNA polymerase subunit alpha OS=Elymus
dentatus GN=rpoA PE=3 SV=1
Length = 339
Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust.
Identities = 242/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI +KGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICIKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q6YLW7_AGRCR (tr|Q6YLW7) DNA-directed RNA polymerase subunit alpha 2
OS=Agropyron cristatum GN=rpoA PE=3 SV=1
Length = 339
Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDRAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q6YLW6_9POAL (tr|Q6YLW6) DNA-directed RNA polymerase subunit alpha OS=Agropyron
mongolicum GN=rpoA PE=3 SV=1
Length = 339
Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDRAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q6YLW4_9POAL (tr|Q6YLW4) DNA-directed RNA polymerase subunit alpha 1
OS=Eremopyrum orientale GN=rpoA PE=3 SV=1
Length = 339
Score = 498 bits (1282), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFKKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>E2DRC4_9POAL (tr|E2DRC4) DNA-directed RNA polymerase subunit alpha OS=Leymus
triticoides GN=rpoA PE=3 SV=1
Length = 339
Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 283/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++F ++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFHMEDRKHIWDTL--EKHLPIDLLKNKL 337
>E2DRB8_9POAL (tr|E2DRB8) DNA-directed RNA polymerase subunit alpha OS=Leymus
innovatus GN=rpoA PE=3 SV=1
Length = 339
Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 283/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++F ++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFHMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q539W0_PSAFR (tr|Q539W0) DNA-directed RNA polymerase subunit alpha
OS=Psathyrostachys fragilis subsp. secaliformis GN=rpoA
PE=3 SV=1
Length = 339
Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 283/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L I IDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIXIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q539W2_9POAL (tr|Q539W2) DNA-directed RNA polymerase subunit alpha 2
OS=Psathyrostachys lanuginosa GN=rpoA PE=3 SV=1
Length = 339
Score = 497 bits (1280), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGXVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI L+I+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDMAQPIANLTEPIDFCIDLRIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q7H6H4_9POAL (tr|Q7H6H4) DNA-directed RNA polymerase subunit alpha OS=Elymus
virginicus GN=rpoA PE=3 SV=1
Length = 339
Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/339 (71%), Positives = 283/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT +KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNPKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q6YLV9_9POAL (tr|Q6YLV9) DNA-directed RNA polymerase subunit alpha OS=Thinopyrum
scirpeum GN=rpoA PE=3 SV=1
Length = 339
Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/339 (71%), Positives = 283/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T P FTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPPFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q540Z1_THIBE (tr|Q540Z1) DNA-directed RNA polymerase subunit alpha 2
OS=Thinopyrum bessarabicum GN=rpoA PE=3 SV=1
Length = 339
Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/339 (71%), Positives = 283/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T P FTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPPFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>Q3Y511_9POAL (tr|Q3Y511) DNA-directed RNA polymerase subunit alpha OS=Elymus
mutabilis GN=rpoA PE=3 SV=1
Length = 339
Score = 495 bits (1274), Expect = e-138, Method: Compositional matrix adjust.
Identities = 241/339 (71%), Positives = 283/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI +KGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICIKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNG EK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGIEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL++I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLLRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>F8RXE1_9POAL (tr|F8RXE1) DNA-directed RNA polymerase subunit alpha OS=Acidosasa
purpurea GN=rpoA PE=3 SV=1
Length = 352
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 242/339 (71%), Positives = 279/339 (82%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY + N QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PL TF RLT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLLTFQKRLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDLPKNK
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLPKNKF 337
>F8RY39_9POAL (tr|F8RY39) DNA-directed RNA polymerase subunit alpha
OS=Phyllostachys edulis GN=rpoA PE=3 SV=1
Length = 339
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 242/339 (71%), Positives = 279/339 (82%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY + N QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PL TF RLT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLLTFQKRLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDLPKNK
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLPKNKF 337
>F8RXT0_9POAL (tr|F8RXT0) DNA-directed RNA polymerase subunit alpha
OS=Indocalamus longiauritus GN=rpoA PE=3 SV=1
Length = 339
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 242/339 (71%), Positives = 279/339 (82%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY + N QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PL TF RLT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLLTFQKRLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDLPKNK
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLPKNKF 337
>F8RS33_9POAL (tr|F8RS33) DNA-directed RNA polymerase subunit alpha
OS=Phyllostachys nigra var. henonis GN=rpoA PE=3 SV=1
Length = 339
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 242/339 (71%), Positives = 279/339 (82%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY + N QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PL TF RLT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLLTFQKRLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDLPKNK
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLPKNKF 337
>B2ZE98_9POAL (tr|B2ZE98) DNA-directed RNA polymerase subunit alpha
OS=Phyllostachys propinqua GN=rpoA PE=3 SV=1
Length = 339
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 242/339 (71%), Positives = 279/339 (82%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY + N QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PL TF RLT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLLTFQKRLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDLPKNK
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLPKNKF 337
>Q5IBI2_9LAMI (tr|Q5IBI2) RNA polymerase alpha subunit (Fragment) OS=Plantago
rugelii GN=rpoA PE=4 SV=1
Length = 308
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 239/310 (77%), Positives = 269/310 (86%), Gaps = 2/310 (0%)
Query: 16 KCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEFS 75
KCVESRTD+KRL+YGRF+LSPLMKGQADTIGIAMRRALLGEI+GTCITR KSE +PHE+S
Sbjct: 1 KCVESRTDSKRLHYGRFVLSPLMKGQADTIGIAMRRALLGEIQGTCITRVKSENVPHEYS 60
Query: 76 TIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQDIILPPFVEIIDNTQH 135
TIAGIQES+ EILMNLK +VL+SNLYGTC ASI +GPGYVTAQDIILPP VEI DNTQH
Sbjct: 61 TIAGIQESVPEILMNLKEIVLRSNLYGTCGASICARGPGYVTAQDIILPPCVEIGDNTQH 120
Query: 136 IASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVRNANHSVHSYGNGNEK 195
IA LTE I CIGL+IER+RGY IK + FQD SYPIDAVFMPVRN NHS+HSY GNEK
Sbjct: 121 IARLTEPISFCIGLEIERSRGYLIKSPHIFQDRSYPIDAVFMPVRNVNHSIHSY--GNEK 178
Query: 196 QEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLEINQHKVTLPLFTFHG 255
QEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EEENL LE NQ V+ F+FH
Sbjct: 179 QEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLENNQDTVSFSPFSFHE 238
Query: 256 RLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLNKSQEDLMKIENFRID 315
+L + RKN+K+ AL+ IFIDQ EL+P+ YNCLK+SNI+TL D L KSQEDLMK+E+FR++
Sbjct: 239 KLDQFRKNKKKKALQSIFIDQFELSPRVYNCLKKSNIYTLFDFLTKSQEDLMKMEHFRLE 298
Query: 316 DVKHILGILE 325
D+K LGILE
Sbjct: 299 DLKQTLGILE 308
>Q539W1_9POAL (tr|Q539W1) DNA-directed RNA polymerase subunit alpha 1
OS=Psathyrostachys lanuginosa GN=rpoA PE=3 SV=1
Length = 339
Score = 491 bits (1265), Expect = e-137, Method: Compositional matrix adjust.
Identities = 241/339 (71%), Positives = 281/339 (82%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV M VR
Sbjct: 121 IILPPSVEIVDTXQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMXVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PL TF RLT L+KN+K I L IFI Q ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLLTFQKRLTNLKKNKKGIPLNCIFIXQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D KHI L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDRKHIWDTL--EKHLPIDLLKNKL 337
>F8RXM3_9POAL (tr|F8RXM3) DNA-directed RNA polymerase subunit alpha
OS=Ferrocalamus rimosivaginus GN=rpoA PE=3 SV=1
Length = 339
Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust.
Identities = 241/339 (71%), Positives = 277/339 (81%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY + N QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
++ T PL TF RLT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ETKNGFTPPLLTFQKRLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDLPKNK
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLPKNKF 337
>C8XU47_COILA (tr|C8XU47) DNA-directed RNA polymerase subunit alpha OS=Coix
lachryma-jobi GN=rpoA PE=3 SV=1
Length = 339
Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust.
Identities = 240/338 (71%), Positives = 278/338 (82%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE++T ST+TL+WKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEITGSTQTLEWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STI GI+ESI EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGNVPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D TQ IA+L E ID CI LQI+R+RGY + N QDGSYPIDAVFMPVR
Sbjct: 121 IILPPSVEIVDTTQPIANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PF+H EEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFIHTEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N++++T PL TF R T L+KN+K I L IFIDQ EL +TYNCLKRSNIHTL DLL+
Sbjct: 241 ENKNRLTPPLLTFQKRFTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRSNIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
K++EDLM+I +FR++D K I L EKH IDLPKNK
Sbjct: 301 KTEEDLMRINSFRMEDGKLIWDTL--EKHLPIDLPKNK 336
>B0FIU3_9ASTE (tr|B0FIU3) RNA polymerase alpha subunit (Fragment) OS=Cuscuta
nitida GN=rpoA PE=3 SV=1
Length = 339
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 246/338 (72%), Positives = 285/338 (84%), Gaps = 5/338 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKV +STRTL+WKCVESRTD+KRL YGRFILSPLMKGQADTI IAMRRALL EIEGT
Sbjct: 1 MVREKVAVSTRTLKWKCVESRTDSKRLSYGRFILSPLMKGQADTIAIAMRRALLSEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR + HE+S IAGIQES+H+ILMNLK +VLKSNLYGTCDAS+Y+KGP YVTAQD
Sbjct: 61 CITRVTFQNASHEYSIIAGIQESVHDILMNLKEIVLKSNLYGTCDASLYIKGPRYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D+TQHIASLTE I+LCIGL+IERNRGY IK FQ+ +Y +DAVFMPV
Sbjct: 121 IILPPHVEIVDSTQHIASLTEPINLCIGLKIERNRGYLIKAHPPFQNETYSLDAVFMPVL 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N NHS++SY GNEK+EILFLEIWTNGSLTPKEALHEA++NL+DLFIPFL EEENL+LE
Sbjct: 181 NVNHSIYSY--GNEKKEILFLEIWTNGSLTPKEALHEAAQNLMDLFIPFLQMEEENLNLE 238
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
+H++ FTF+ +++KL K +K +LK IFIDQ PK YNCL +SNI TL DLLN
Sbjct: 239 DAEHQIPFSPFTFYDKVSKLIKKKKR-SLKSIFIDQLAFPPKIYNCLTKSNIFTLLDLLN 297
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
KSQEDL+KIE+F I+DVK ILGIL EK+FA+DLPK K
Sbjct: 298 KSQEDLLKIEHFHIEDVKQILGIL--EKNFALDLPKKK 333
>E2GJW2_9POAL (tr|E2GJW2) DNA-directed RNA polymerase subunit alpha
OS=Chasmanthium latifolium GN=rpoA PE=3 SV=1
Length = 339
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 240/339 (70%), Positives = 277/339 (81%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+VT ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVTGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STI GI+ESI EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGNVPHEYSTIVGIEESIQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+L E ID CI LQI+R+RGY + N QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLREPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGSSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PL TF R T L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLLTFQKRFTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDLP+NK
Sbjct: 301 KTEEDLMRIDSFRMEDGKLIWDTL--EKHLPIDLPQNKF 337
>B3TN81_BRADI (tr|B3TN81) RNA polymerase alpha subunit (Fragment) OS=Brachypodium
distachyon GN=rpoA PE=3 SV=1
Length = 338
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/339 (69%), Positives = 281/339 (82%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL+KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLIKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP +TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILVNLKEIVLRSNLYGVRDASICVKGPRCITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VE++D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEVVDTAQPIANLTEPIDFCIQLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTGFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT +KN+K I L +IFIDQ EL +TYN LKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNRKKNKKGIPLNFIFIDQLELPSRTYNYLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH +DL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPVDLLKNKL 337
>D8WMU4_9POAL (tr|D8WMU4) DNA-directed RNA polymerase subunit alpha
OS=Achnatherum diegoense GN=rpoA PE=3 SV=1
Length = 339
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 242/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI+VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASIWVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIELQIQRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLLKNKL 337
>D8WMR6_9POAL (tr|D8WMR6) DNA-directed RNA polymerase subunit alpha OS=Poa
holciformis GN=rpoA PE=3 SV=1
Length = 341
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/341 (69%), Positives = 280/341 (82%), Gaps = 4/341 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STI GI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIGGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP +EI+D +Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSIEIVDTSQPIANLTEPIDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLT--KLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDL 298
N+++ T PL TF RLT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DL
Sbjct: 241 ENKNRFTPPLLTFQKRLTNLNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDL 300
Query: 299 LNKSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
L+K++EDLM+I++FR++D K I L E + IDL KNK+
Sbjct: 301 LSKTEEDLMRIDSFRMEDRKQIWDTL--ENYLPIDLLKNKL 339
>D8WMS6_9POAL (tr|D8WMS6) DNA-directed RNA polymerase subunit alpha OS=Jarava
leptostachya GN=rpoA PE=3 SV=1
Length = 339
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 242/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI+VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASIWVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 KNKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLLKNKL 337
>D8WMU2_9POAL (tr|D8WMU2) DNA-directed RNA polymerase subunit alpha
OS=Austrostipa nodosa GN=rpoA PE=3 SV=1
Length = 339
Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust.
Identities = 242/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI+VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASIWVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLLKNKL 337
>D8WMT9_9POAL (tr|D8WMT9) DNA-directed RNA polymerase subunit alpha OS=Amelichloa
brachychaeta GN=rpoA PE=3 SV=1
Length = 339
Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust.
Identities = 242/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI+VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASIWVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLLKNKL 337
>D8WMS3_9POAL (tr|D8WMS3) DNA-directed RNA polymerase subunit alpha OS=Nassella
melanosperma GN=rpoA PE=3 SV=1
Length = 339
Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust.
Identities = 242/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI+VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASIWVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLLKNKL 337
>D8WMS0_9POAL (tr|D8WMS0) DNA-directed RNA polymerase subunit alpha OS=Nassella
pampagrandensis GN=rpoA PE=3 SV=1
Length = 339
Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust.
Identities = 242/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI+VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASIWVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLLKNKL 337
>D8WMS2_9POAL (tr|D8WMS2) DNA-directed RNA polymerase subunit alpha
OS=Piptochaetium napostaense GN=rpoA PE=3 SV=1
Length = 339
Score = 482 bits (1240), Expect = e-134, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 283/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDRAQPIANLTEPIDFCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL KTYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSKTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLMKI++FR++D K I L EKH IDL KNK+
Sbjct: 301 KTEEDLMKIDSFRMEDGKQIWDTL--EKHLPIDLLKNKL 337
>D8WMT6_9POAL (tr|D8WMT6) DNA-directed RNA polymerase subunit alpha
OS=Achnatherum psilantherum GN=rpoA PE=3 SV=1
Length = 339
Score = 481 bits (1239), Expect = e-134, Method: Compositional matrix adjust.
Identities = 242/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI+VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASIWVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTGQPIANLTEPIDFCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLLKNKL 337
>D8WMS4_9POAL (tr|D8WMS4) DNA-directed RNA polymerase subunit alpha OS=Nassella
arcuata GN=rpoA PE=3 SV=1
Length = 339
Score = 481 bits (1238), Expect = e-134, Method: Compositional matrix adjust.
Identities = 241/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI+VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASIWVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE +D CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPMDFCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLLKNKL 337
>D8WMS1_9POAL (tr|D8WMS1) DNA-directed RNA polymerase subunit alpha
OS=Piptochaetium montevidense GN=rpoA PE=3 SV=1
Length = 339
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 283/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDRAQPIANLTEPIDFCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLMKI++FR++D K I L EKH IDL KNK+
Sbjct: 301 KTEEDLMKIDSFRMEDGKQIWDTL--EKHLPIDLLKNKL 337
>D8WMU5_9POAL (tr|D8WMU5) DNA-directed RNA polymerase subunit alpha
OS=Achnatherum eminens GN=rpoA PE=3 SV=1
Length = 339
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 241/339 (71%), Positives = 283/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI+VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASIWVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNG LTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGRLTPKEALYEASRNLIDLFLPFLHAEEEGASFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLLKNKL 337
>D8WMT3_9POAL (tr|D8WMT3) DNA-directed RNA polymerase subunit alpha OS=Aciachne
flagellifera GN=rpoA PE=3 SV=1
Length = 339
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 242/339 (71%), Positives = 283/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLLKNKL 337
>F8S8D4_9POAL (tr|F8S8D4) DNA-directed RNA polymerase subunit alpha OS=Puelia
olyriformis GN=rpoA PE=3 SV=1
Length = 340
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 239/340 (70%), Positives = 276/340 (81%), Gaps = 3/340 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVR++V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVRKEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STI GI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGNVPHEYSTIVGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP VEI+D Q IA+LTE ID CI LQI+R+RGY + N QDGSYPIDAV MPVR
Sbjct: 121 IISPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQ-EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHL 239
N N+S+ S GNGNEKQ EILFLEIWTNGSLTPKEAL+EASRNLIDLF+ FLHAEEE
Sbjct: 181 NVNYSIFSCGNGNEKQHEILFLEIWTNGSLTPKEALYEASRNLIDLFLSFLHAEEEGTSF 240
Query: 240 EINQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLL 299
E N+++ T PL TF LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL
Sbjct: 241 EENKNRFTTPLLTFPKILTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLL 300
Query: 300 NKSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
NK++ED M+I++FR++D K IL L EKH IDLPKNK
Sbjct: 301 NKTEEDFMRIDSFRMEDGKKILDTL--EKHLPIDLPKNKF 338
>D8WMR7_9POAL (tr|D8WMR7) DNA-directed RNA polymerase subunit alpha
OS=Piptochaetium medium GN=rpoA PE=3 SV=1
Length = 339
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 243/339 (71%), Positives = 283/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDRAQPIANLTEPIDFCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTCFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLMKI++FR++D K I L EKH IDL KNK+
Sbjct: 301 KTEEDLMKIDSFRMEDGKQIWDTL--EKHLPIDLLKNKL 337
>D8WMT5_9POAL (tr|D8WMT5) DNA-directed RNA polymerase subunit alpha
OS=Achnatherum chingii GN=rpoA PE=3 SV=1
Length = 339
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 242/339 (71%), Positives = 282/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWT GSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTTGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I+NFR++D K I L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDNFRMEDGKQIWDTL--EKHLPIDLLKNKL 337
>D8WMS7_9POAL (tr|D8WMS7) DNA-directed RNA polymerase subunit alpha OS=Jarava
plumosula GN=rpoA PE=3 SV=1
Length = 339
Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust.
Identities = 241/339 (71%), Positives = 283/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI+VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASIWVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EAS NLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASHNLIDLFLPFLHAEEEGASFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLLKNKL 337
>A9QC21_9ASTR (tr|A9QC21) RNA polymerase alpha subunit (Fragment) OS=Scaevola
aemula GN=rpoA PE=3 SV=1
Length = 332
Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust.
Identities = 247/337 (73%), Positives = 275/337 (81%), Gaps = 7/337 (2%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKVT+S R L W+CVESR DNKR YGRFILSPLMKGQADTIGIA+RRALL EIEGT
Sbjct: 1 MVREKVTVSPRGLHWRCVESRADNKRRLYGRFILSPLMKGQADTIGIALRRALLAEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
ITRAK EK+PHE+STI GIQES+HEILMNLK +VL+SNLYGTC+ASI VKGPGYVTAQD
Sbjct: 61 AITRAKFEKVPHEYSTIRGIQESVHEILMNLKEIVLRSNLYGTCEASICVKGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP+VEI+DNTQHIASLTE I+L I LQIE+NR ++K N FQDGSY I AV MPVR
Sbjct: 121 IISPPYVEIVDNTQHIASLTEPIELIIRLQIEKNRFIQLKERNTFQDGSYAIGAVLMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+ N+S+HS GNG KQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLH EE N LE
Sbjct: 181 HMNYSIHSSGNG--KQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEGN--LE 236
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQ ++ P FTF+ K K++ALK IFIDQSEL P YNCLKRSNI+TL DLLN
Sbjct: 237 NNQDRIPFPSFTFYD-KLSKLKKNKKMALKSIFIDQSELPPSIYNCLKRSNIYTLFDLLN 295
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
SQEDLMK + I+DVK ILG+L EK+ IDLPKN
Sbjct: 296 NSQEDLMKKAHLHIEDVKRILGLL--EKNCVIDLPKN 330
>D8WMU3_9POAL (tr|D8WMU3) DNA-directed RNA polymerase subunit alpha 2
OS=Lorenzochloa erectifolia GN=rpoA PE=3 SV=1
Length = 339
Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust.
Identities = 241/339 (71%), Positives = 282/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
I LPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 ITLPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLLKNKL 337
>D8WMT2_9POAL (tr|D8WMT2) DNA-directed RNA polymerase subunit alpha OS=Aciachne
pulvinata GN=rpoA PE=3 SV=1
Length = 339
Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust.
Identities = 241/339 (71%), Positives = 282/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
I LPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 ITLPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLLKNKL 337
>D8WMT0_9POAL (tr|D8WMT0) DNA-directed RNA polymerase subunit alpha
OS=Anatherostipa brevis GN=rpoA PE=3 SV=1
Length = 339
Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust.
Identities = 241/339 (71%), Positives = 282/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
I LPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 ITLPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLLKNKL 337
>D3WBT4_LONJA (tr|D3WBT4) RNA polymerase alpha subunit protein OS=Lonicera
japonica GN=rpoA PE=4 SV=1
Length = 264
Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/264 (86%), Positives = 242/264 (91%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MV+EKVT+STRTL+WKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVQEKVTVSTRTLEWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEKIPHE+STI GIQES+HEILMNLK +VL+SNLYGTCDASI V+GPG VTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP+VEIIDNTQHI SLTE ID CIGLQIERNRGY IK N+FQDGSYPIDAVFMPVR
Sbjct: 121 IISPPYVEIIDNTQHIVSLTEPIDFCIGLQIERNRGYLIKTPNHFQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSYGN NEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EEENLHLE
Sbjct: 181 NANHSIHSYGNENEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQ 264
NQH V L FTFH +L KLRK +
Sbjct: 241 DNQHTVPLTPFTFHEKLAKLRKKK 264
>G3EFF9_9POAL (tr|G3EFF9) RNA polymerase alpha subunit OS=Panicum virgatum
GN=rpoA PE=4 SV=1
Length = 339
Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust.
Identities = 237/339 (69%), Positives = 276/339 (81%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MV+E+VT ST+TL+WKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVQEEVTGSTQTLEWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STI GI+ESI EIL+NLK++VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGNVPHEYSTIVGIEESIQEILLNLKDIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D TQ IA+L E ID I LQI+R+RGY + N QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTTQPIANLREPIDFYIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PL TF R T L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLLTFQKRFTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++F ++D K I L KH IDLPKNK
Sbjct: 301 KTEEDLMRIDSFHMEDEKLIWDTL--AKHLPIDLPKNKF 337
>B0FIU5_CUSEU (tr|B0FIU5) RNA polymerase alpha subunit (Fragment) OS=Cuscuta
europaea GN=rpoA PE=4 SV=1
Length = 329
Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust.
Identities = 240/332 (72%), Positives = 280/332 (84%), Gaps = 4/332 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKV +STRTLQWKCVESR D+KRL+YGRFILSPL+KGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVAVSTRTLQWKCVESRIDSKRLFYGRFILSPLIKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR KSEK HE+STI GIQES+HEILMNLK +VL+SNLY +CDASI +KGP +VTAQD
Sbjct: 61 CITRVKSEKASHEYSTIGGIQESVHEILMNLKEIVLRSNLYESCDASICIKGPRHVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+I+DNTQHIA LTE ID IGL+IERNRGY K +F DGSYPIDA+FMPV+
Sbjct: 121 IILPPHVQIVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFMPVQ 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSY GNEKQEILFLEIWTNGSLTPKEALHE++R LID FIPF EEENL+L
Sbjct: 181 NANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENLYLA 238
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
+H + LP F+ ++T L K +K+++LK IFIDQ E PK YNCLK+SNI TL DL N
Sbjct: 239 DAKHTIPLPPLIFYNKVTTLIKKKKKLSLKLIFIDQLEFPPKIYNCLKKSNIFTLFDLFN 298
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAI 332
+ QEDL+KIE+F+++D+KHILGIL K+FA+
Sbjct: 299 QKQEDLLKIEHFQLEDIKHILGIL--GKYFAL 328
>Q49C94_CUSEU (tr|Q49C94) RpoA OS=Cuscuta europaea GN=rpoA PE=4 SV=1
Length = 329
Score = 478 bits (1229), Expect = e-133, Method: Compositional matrix adjust.
Identities = 240/332 (72%), Positives = 280/332 (84%), Gaps = 4/332 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKV +STRTLQWKCVESR D+KRL+YGRFILSPL+KGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVAVSTRTLQWKCVESRIDSKRLFYGRFILSPLIKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR KSEK HE+STI GIQES+HEILMNLK +VL+SNLY +CDASI +KGP +VTAQD
Sbjct: 61 CITRVKSEKASHEYSTIGGIQESVHEILMNLKEIVLRSNLYESCDASICIKGPRHVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+I+DNTQHIA LTE ID IGL+IERNRGY K +F DGSYPIDA+FMPV+
Sbjct: 121 IILPPHVQIVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGSYPIDALFMPVQ 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSY GNEKQEILFLEIWTNGSLTPKEALHE++R LID FIPF EEENL+L
Sbjct: 181 NANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHESARILIDFFIPFFQMEEENLYLA 238
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
+H + LP F+ ++T L K +K+++LK IFIDQ E PK YNCLK+SNI TL DL N
Sbjct: 239 DAKHTIXLPPLIFYNKVTTLIKKKKKLSLKLIFIDQLEFPPKIYNCLKKSNIFTLFDLFN 298
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAI 332
+ QEDL+KIE+F+++D+KHILGIL K+FA+
Sbjct: 299 QKQEDLLKIEHFQLEDIKHILGIL--GKYFAL 328
>D8WMT1_9POAL (tr|D8WMT1) DNA-directed RNA polymerase subunit alpha
OS=Hesperostipa comata GN=rpoA PE=3 SV=1
Length = 339
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 241/339 (71%), Positives = 282/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T P FTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPRFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLLKNKL 337
>D8WMU0_9POAL (tr|D8WMU0) DNA-directed RNA polymerase subunit alpha OS=Amelichloa
caudata GN=rpoA PE=3 SV=1
Length = 339
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 240/339 (70%), Positives = 282/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI+VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASIWVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGS TPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSSTPKEALYEASRNLIDLFLPFLHAEEEGASFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDL K K+
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLLKXKL 337
>D8WMS8_9POAL (tr|D8WMS8) DNA-directed RNA polymerase subunit alpha
OS=Piptatherum miliaceum GN=rpoA PE=3 SV=1
Length = 339
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 239/339 (70%), Positives = 282/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+ST+AGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTLAGIEESVQEILLNLKEIVLRSNLYGVRDASISVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE +D CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPVDFCIELQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDL KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLLKNKL 337
>D8WMS9_9POAL (tr|D8WMS9) DNA-directed RNA polymerase subunit alpha OS=Aciachne
acicularis GN=rpoA PE=3 SV=1
Length = 339
Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust.
Identities = 240/339 (70%), Positives = 281/339 (82%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
I LPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 ITLPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDL +I++FR++D K I L EKH IDL KNK+
Sbjct: 301 KTEEDLRRIDSFRMEDGKQIWDTL--EKHLPIDLLKNKL 337
>D8WMR8_9POAL (tr|D8WMR8) DNA-directed RNA polymerase subunit alpha
OS=Piptochaetium lasianthum GN=rpoA PE=3 SV=1
Length = 339
Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust.
Identities = 240/339 (70%), Positives = 280/339 (82%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDRAQPIANLTEPIDFCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+ GNGNEK EILFLE+WTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYXXXXXGNGNEKHEILFLELWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLMKI++FR++D K I L EKH IDL KNK+
Sbjct: 301 KTEEDLMKIDSFRMEDGKQIWDTL--EKHLPIDLLKNKL 337
>D8WMU1_9POAL (tr|D8WMU1) DNA-directed RNA polymerase subunit alpha OS=Amelichloa
brevipes GN=rpoA PE=3 SV=1
Length = 339
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/339 (70%), Positives = 282/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V S TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSHSTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE IDLCI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDLCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I +EKH I+L KNK+
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWD--NLEKHLPINLLKNKL 337
>Q539V6_9POAL (tr|Q539V6) DNA-directed RNA polymerase subunit alpha 2
OS=Psathyrostachys caduca GN=rpoA PE=3 SV=1
Length = 339
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 235/339 (69%), Positives = 270/339 (79%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + N+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDXAQPIANLTEPIDFCIDLQIKRDRGYQTELRKNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF RLT L+KN+K I L IFIDQ ELT +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++ED L EKH IDL KNK+
Sbjct: 301 KTEEDXXXXXXXXXXXXXXXXXTL--EKHLPIDLLKNKL 337
>F8RYC3_9POAL (tr|F8RYC3) DNA-directed RNA polymerase subunit alpha OS=Bambusa
emeiensis GN=rpoA PE=3 SV=1
Length = 339
Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/339 (70%), Positives = 278/339 (82%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY + N QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDMAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFYCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PL TF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLLTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDLPKNK
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLPKNKF 337
>C7BFA3_DENLA (tr|C7BFA3) DNA-directed RNA polymerase subunit alpha
OS=Dendrocalamus latiflorus GN=rpoA PE=3 SV=1
Length = 339
Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/339 (70%), Positives = 278/339 (82%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY + N QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDMAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFYCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PL TF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLLTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDLPKNK
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLPKNKF 337
>C6GJ86_BAMOL (tr|C6GJ86) DNA-directed RNA polymerase subunit alpha OS=Bambusa
oldhamii GN=rpoA PE=3 SV=1
Length = 339
Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/339 (70%), Positives = 278/339 (82%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY + N QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDMAQPIANLTEPIDFCIELQIKRDRGYHTELRKNSQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFYCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PL TF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTPPLLTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDLPKNK
Sbjct: 301 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLPKNKF 337
>D5HQJ1_ANOMA (tr|D5HQJ1) DNA-directed RNA polymerase subunit alpha OS=Anomochloa
marantoidea GN=rpoA PE=3 SV=1
Length = 339
Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust.
Identities = 237/338 (70%), Positives = 279/338 (82%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V S R LQWKCVESR D+KRLYYGRFILSPL+KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSVRRLQWKCVESRVDSKRLYYGRFILSPLIKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSE +PHE+STI GI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKSENVPHEYSTIVGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
II PP VEI+D QHIA+LTE ID CI LQI+R+RGY + N QD SYPIDAV MPV+
Sbjct: 121 IISPPSVEIVDTAQHIATLTEPIDFCIELQIKRDRGYYTELRKNSQDESYPIDAVSMPVQ 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE+ + E
Sbjct: 181 NVNYSIFSCGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEESTNFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T P T +LT L+KN+K + L IFIDQ +L +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTQPPLTLQKKLTNLKKNKKGVPLNSIFIDQLKLPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
K++EDL++I+NFR++D K IL L EK IDLPKNK
Sbjct: 301 KTEEDLLRIDNFRMEDGKQILDTL--EKDLPIDLPKNK 336
>B0FIU4_9ASTE (tr|B0FIU4) RNA polymerase alpha subunit (Fragment) OS=Cuscuta
epilinum GN=rpoA PE=4 SV=1
Length = 330
Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust.
Identities = 241/334 (72%), Positives = 278/334 (83%), Gaps = 4/334 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREKV +STRTLQWKCVESR D+KRL YGRFILSPL+KGQADTIGIAMRRALLGEIEGT
Sbjct: 1 MVREKVAVSTRTLQWKCVESRIDSKRLSYGRFILSPLIKGQADTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR KSEK HE+STI GIQES+HEILMNLK +VL+SNLYGTCDASI +KGP +VTAQD
Sbjct: 61 CITRVKSEKASHEYSTIGGIQESVHEILMNLKEIVLRSNLYGTCDASICIKGPRHVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+I+DNTQHIA LTE ID IGL+IERNRGY K +F DG YPIDA+FMPV+
Sbjct: 121 IILPPHVQIVDNTQHIAWLTEPIDFFIGLKIERNRGYFNKVDLHFDDGIYPIDALFMPVQ 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS+HSY GNEKQEILFLEIWTNGSLTPKEALHEA+R LID FIPF H EEENL+L
Sbjct: 181 NANHSIHSY--GNEKQEILFLEIWTNGSLTPKEALHEAARILIDFFIPFFHMEEENLYLA 238
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
+H + L F+ ++TKL K +K+++LK IFIDQ E PK YNCL +SNI TL DL N
Sbjct: 239 DAEHTIPLSSLIFYNKVTKLIKKKKKLSLKLIFIDQLEFPPKIYNCLTKSNIFTLFDLFN 298
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDL 334
+EDL+KIE+F+++D+K ILGIL K+FA+ L
Sbjct: 299 HKEEDLLKIEHFQLEDIKKILGIL--AKYFALYL 330
>E9KJ48_9ORYZ (tr|E9KJ48) DNA-directed RNA polymerase subunit alpha OS=Oryza
australiensis GN=rpoA PE=3 SV=1
Length = 337
Score = 471 bits (1213), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/339 (68%), Positives = 272/339 (80%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGE EGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGETEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CIT AK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG +ASI VKGP Y+TAQD
Sbjct: 61 CITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE D I L+I+R+RGY + N QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGN K EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLH EEE +
Sbjct: 181 NVNYSIFSCGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQ 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PL +F RLT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTSPLLSFQKRLTNLKKNKKRIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR+ D K I L EKH +DLPKNK
Sbjct: 301 KTEEDLMRIDSFRMQDGKQIWDTL--EKHLPMDLPKNKF 337
>D8WMS5_9POAL (tr|D8WMS5) DNA-directed RNA polymerase subunit alpha OS=Nassella
novarae GN=rpoA PE=3 SV=1
Length = 339
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 241/339 (71%), Positives = 283/339 (83%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI+VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASIWVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGXXFE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHT+ DLL+
Sbjct: 241 ENKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTILDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM I++FR++D K I L EKH IDL KNK+
Sbjct: 301 KTEEDLMXIDSFRMEDGKQIWDTL--EKHLPIDLLKNKL 337
>Q8S1Q6_ORYSJ (tr|Q8S1Q6) Chloroplast RNA polymerase alpha chain OS=Oryza sativa
subsp. japonica GN=P0557A01.13 PE=3 SV=1
Length = 337
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/339 (67%), Positives = 271/339 (79%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGE EGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGETEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CIT AK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG ASI VKGP Y+TAQD
Sbjct: 61 CITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE D I L+I+R+RGY + N QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ + GNGN K EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLH EEE +
Sbjct: 181 NVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQ 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PL +F RLT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTSPLLSFQKRLTNLKKNKKRIPLSCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR+ D K I L EKH +DLPKNK
Sbjct: 301 KTEEDLMRIDSFRMQDGKQIWDTL--EKHLPMDLPKNKF 337
>E9KIY0_9ORYZ (tr|E9KIY0) DNA-directed RNA polymerase subunit alpha OS=Oryza
meridionalis GN=rpoA PE=3 SV=1
Length = 337
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/339 (67%), Positives = 271/339 (79%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGE EGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGETEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CIT AK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG ASI VKGP Y+TAQD
Sbjct: 61 CITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE D I L+I+R+RGY + N QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ + GNGN K EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLH EEE +
Sbjct: 181 NVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQ 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PL +F RLT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTSPLLSFQKRLTNLKKNKKRIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR+ D K I L EKH +DLPKNK
Sbjct: 301 KTEEDLMRIDSFRMQDGKQIWDTL--EKHLPMDLPKNKF 337
>E9KIR2_ORYSJ (tr|E9KIR2) DNA-directed RNA polymerase subunit alpha 1 OS=Oryza
sativa subsp. japonica GN=rpoA PE=3 SV=1
Length = 337
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/339 (67%), Positives = 271/339 (79%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGE EGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGETEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CIT AK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG ASI VKGP Y+TAQD
Sbjct: 61 CITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE D I L+I+R+RGY + N QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ + GNGN K EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLH EEE +
Sbjct: 181 NVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQ 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PL +F RLT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 241 ENKNRFTSPLLSFQKRLTNLKKNKKRIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR+ D K I L EKH +DLPKNK
Sbjct: 301 KTEEDLMRIDSFRMQDGKQIWDTL--EKHLPMDLPKNKF 337
>A9L9C8_LEMMI (tr|A9L9C8) RNA polymerase alpha subunit OS=Lemna minor GN=rpoA
PE=4 SV=1
Length = 284
Score = 468 bits (1205), Expect = e-130, Method: Compositional matrix adjust.
Identities = 221/282 (78%), Positives = 254/282 (90%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE++ STRTLQWKCVESR D+KRL+YGRF+LSPLMKGQADTIGIAMRRALL E+EGT
Sbjct: 1 MVREEIAGSTRTLQWKCVESRVDSKRLHYGRFVLSPLMKGQADTIGIAMRRALLEEMEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAKSEK+PHE+STI GI+ES+HEILMNLK +VL+SNLYGT +ASI VKGP +TA+D
Sbjct: 61 CITRAKSEKVPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTREASICVKGPKTITAED 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILP VEI+D TQHIA+LTE +DL IGLQI+R+RGYR++PTNN QDGSYPIDAVFMPVR
Sbjct: 121 IILPASVEIVDTTQHIATLTEPLDLYIGLQIQRDRGYRMRPTNNSQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS++SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE++++LE
Sbjct: 181 NANHSIYSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEKDINLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPK 282
N+ + TLPLFTFH +L L KN+KEI LK IFIDQ EL +
Sbjct: 241 ENKSRFTLPLFTFHDKLVNLTKNKKEIGLKCIFIDQLELPSR 282
>Q7X6E0_ORYSA (tr|Q7X6E0) OSJNBa0079C19.1 protein OS=Oryza sativa
GN=OSJNBa0079C19.1 PE=3 SV=1
Length = 446
Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/335 (67%), Positives = 267/335 (79%), Gaps = 2/335 (0%)
Query: 5 KVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITR 64
+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGE EGTCIT
Sbjct: 114 EVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGETEGTCITH 173
Query: 65 AKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQDIILP 124
AK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG ASI VKGP Y+TAQDIILP
Sbjct: 174 AKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILP 233
Query: 125 PFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVRNANH 184
P VEI+D Q IA+LTE D I L+I+R+RGY + N QDGSYPIDAV MPVRN N+
Sbjct: 234 PSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNY 293
Query: 185 SVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLEINQH 244
S+ + GNGN K EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLH EEE + N++
Sbjct: 294 SIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKN 353
Query: 245 KVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLNKSQE 304
+ T PL +F RLT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+K++E
Sbjct: 354 RFTSPLLSFQKRLTNLKKNKKRIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLSKTEE 413
Query: 305 DLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
DLM+I++FR+ D K I L EKH +DLPKNK
Sbjct: 414 DLMRIDSFRMQDGKQIWDTL--EKHLPMDLPKNKF 446
>Q7DNA8_ORYSJ (tr|Q7DNA8) OSJNBa0061C08.8 protein OS=Oryza sativa subsp. japonica
GN=OSJNBa0061C08.8 PE=3 SV=1
Length = 446
Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/335 (67%), Positives = 267/335 (79%), Gaps = 2/335 (0%)
Query: 5 KVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITR 64
+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGE EGTCIT
Sbjct: 114 EVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGETEGTCITH 173
Query: 65 AKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQDIILP 124
AK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG ASI VKGP Y+TAQDIILP
Sbjct: 174 AKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILP 233
Query: 125 PFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVRNANH 184
P VEI+D Q IA+LTE D I L+I+R+RGY + N QDGSYPIDAV MPVRN N+
Sbjct: 234 PSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNY 293
Query: 185 SVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLEINQH 244
S+ + GNGN K EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLH EEE + N++
Sbjct: 294 SIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKN 353
Query: 245 KVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLNKSQE 304
+ T PL +F RLT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+K++E
Sbjct: 354 RFTSPLLSFQKRLTNLKKNKKRIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLSKTEE 413
Query: 305 DLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
DLM+I++FR+ D K I L EKH +DLPKNK
Sbjct: 414 DLMRIDSFRMQDGKQIWDTL--EKHLPMDLPKNKF 446
>Q8SAU1_ORYSA (tr|Q8SAU1) Putative RNA polymerase alpha subunit OS=Oryza sativa
GN=OSJNBa0022D10.2 PE=3 SV=1
Length = 446
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/335 (67%), Positives = 267/335 (79%), Gaps = 2/335 (0%)
Query: 5 KVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITR 64
+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGE EGTCIT
Sbjct: 114 EVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGETEGTCITH 173
Query: 65 AKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQDIILP 124
AK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG ASI VKGP Y+TAQDIILP
Sbjct: 174 AKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILP 233
Query: 125 PFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVRNANH 184
P VEI+D Q IA+LTE D I L+I+R+RGY + N QDGSYPIDAV MPVRN N+
Sbjct: 234 PSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNY 293
Query: 185 SVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLEINQH 244
S+ + GNGN + EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLH EEE + N++
Sbjct: 294 SIFACGNGNARYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKN 353
Query: 245 KVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLNKSQE 304
+ T PL +F RLT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+K++E
Sbjct: 354 RFTSPLLSFQKRLTNLKKNKKRIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLSKTEE 413
Query: 305 DLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
DLM+I++FR+ D K I L EKH +DLPKNK
Sbjct: 414 DLMRIDSFRMQDGKQIWDTL--EKHLPMDLPKNKF 446
>Q7G6A7_ORYSJ (tr|Q7G6A7) DNA-directed RNA polymerase alpha chain, putative,
expressed OS=Oryza sativa subsp. japonica
GN=OSJNAb0075K12.31 PE=3 SV=1
Length = 446
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/335 (67%), Positives = 267/335 (79%), Gaps = 2/335 (0%)
Query: 5 KVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITR 64
+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGE EGTCIT
Sbjct: 114 EVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGETEGTCITH 173
Query: 65 AKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQDIILP 124
AK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG ASI VKGP Y+TAQDIILP
Sbjct: 174 AKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQDIILP 233
Query: 125 PFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVRNANH 184
P VEI+D Q IA+LTE D I L+I+R+RGY + N QDGSYPIDAV MPVRN N+
Sbjct: 234 PSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNY 293
Query: 185 SVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLEINQH 244
S+ + GNGN + EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLH EEE + N++
Sbjct: 294 SIFACGNGNARYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKN 353
Query: 245 KVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLNKSQE 304
+ T PL +F RLT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+K++E
Sbjct: 354 RFTSPLLSFQKRLTNLKKNKKRIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLSKTEE 413
Query: 305 DLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
DLM+I++FR+ D K I L EKH +DLPKNK
Sbjct: 414 DLMRIDSFRMQDGKQIWDTL--EKHLPMDLPKNKF 446
>D8WMT8_9POAL (tr|D8WMT8) DNA-directed RNA polymerase subunit alpha 1
OS=Lorenzochloa erectifolia GN=rpoA PE=3 SV=1
Length = 339
Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust.
Identities = 229/339 (67%), Positives = 267/339 (78%), Gaps = 2/339 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQD
Sbjct: 61 CITRAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
I LPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 ITLPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+S+ S GNGNEK EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFL
Sbjct: 181 NVNYSIFSCGNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLXXXXXXXXXX 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L KN+K I IF Q EL +TYNCLKR+ IHTL DLL+
Sbjct: 241 XNKNRFTPPLFTFQKKLTNLXKNKKGIPXXCIFXXQLELPSRTYNCLKRAXIHTLLDLLS 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++E LM I++FR + K I L EKH IDL KNK+
Sbjct: 301 KTEEXLMXIDSFRXEXGKQIWDTL--EKHLPIDLLKNKL 337
>D8WMT4_9POAL (tr|D8WMT4) DNA-directed RNA polymerase subunit alpha
OS=Achnatherum inebrians GN=rpoA PE=3 SV=1
Length = 330
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 235/339 (69%), Positives = 276/339 (81%), Gaps = 11/339 (3%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE+V ST+TLQWKCVESR D+KRLYYGRFILSPL KGQADT+GIA+RRALLGEIEGT
Sbjct: 1 MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK +PHE+STIAGI+ES+ EIL+NLK +VL+SNLYG DASI+VKGP Y+TAQD
Sbjct: 61 CITRAKFGSLPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRDASIWVKGPRYITAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+D Q IA+LTE ID CI LQI+R+RGY+ + NN+QDGSYPIDAV MPVR
Sbjct: 121 IILPPSVEIVDTAQPIANLTEPIDFCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N N+ H EILFLEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E
Sbjct: 181 NVNYRKH---------EILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGASFE 231
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+++ T PLFTF +LT L+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+
Sbjct: 232 ENKNRFTPPLFTFQKKLTNLKKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS 291
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNKI 339
K++EDLM+I++FR++D K I L EKH IDL KNK+
Sbjct: 292 KTEEDLMRIDSFRMEDGKQIWDTL--EKHLPIDLLKNKL 328
>G1FBL4_9ARAE (tr|G1FBL4) RNA polymerase alpha subunit OS=Wolffia australiana
GN=rpoA PE=4 SV=1
Length = 284
Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust.
Identities = 218/282 (77%), Positives = 250/282 (88%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVRE++ STRTLQWKCVESR D+KRL+YGRF+LSPLMKGQ DTIGIAMRRALL E+EGT
Sbjct: 1 MVREEIAGSTRTLQWKCVESRVDSKRLHYGRFVLSPLMKGQGDTIGIAMRRALLEEMEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITRAK EK+PHE+STI GI+ES+HEILMNLK +VL+SNLYGT DASI VKGP +TA+D
Sbjct: 61 CITRAKFEKVPHEYSTIIGIEESVHEILMNLKEIVLRSNLYGTRDASICVKGPKNITAED 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
I LP VEI+D TQHIA+LTE DLCI LQI+R+RGYRI+ TN+ QDGSYPIDAVFMPVR
Sbjct: 121 IRLPSSVEIVDTTQHIATLTEPRDLCIELQIQRDRGYRIRSTNDSQDGSYPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NANHS++SYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE++++LE
Sbjct: 181 NANHSIYSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEKDVNLE 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPK 282
N+ + TLPLFTFH +L + KN+KEIALK IFIDQ EL +
Sbjct: 241 ENKSRFTLPLFTFHDKLANVTKNKKEIALKCIFIDQLELPSR 282
>C6TK62_SOYBN (tr|C6TK62) Putative uncharacterized protein (Fragment) OS=Glycine
max PE=2 SV=1
Length = 269
Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust.
Identities = 215/254 (84%), Positives = 233/254 (91%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
MVREK+ +STRTLQWKCVESR D+KRLYYGRFILSPLMKGQADTIGIAMRR LLGEIEGT
Sbjct: 1 MVREKIRVSTRTLQWKCVESRIDSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K EKIPHE+STI GI+ES+HEILMNLK +VL+SNLYGT DASI KGPGYVTAQD
Sbjct: 61 CITRVKLEKIPHEYSTIIGIEESVHEILMNLKEIVLRSNLYGTRDASICFKGPGYVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP VEI+DNTQHIA++TE ++LCI L+IERNRGYRIK NFQDGSYPIDA FMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
N NHS+HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE+N +LE
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEDNFNLE 240
Query: 241 INQHKVTLPLFTFH 254
NQHKVTLPLFTFH
Sbjct: 241 NNQHKVTLPLFTFH 254
>A9QB58_CYCMI (tr|A9QB58) RNA polymerase alpha subunit (Fragment) OS=Cycas
micronesica GN=rpoA PE=3 SV=1
Length = 340
Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust.
Identities = 218/338 (64%), Positives = 271/338 (80%), Gaps = 2/338 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+++++ST+T +W+C+ S D+KRL+YGRF LSPL KGQA TIGIAMRRALLGEIEGT
Sbjct: 1 MIRDEISVSTQTPRWRCIGSGADSKRLHYGRFALSPLRKGQASTIGIAMRRALLGEIEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CIT AK EK+ HE+S I GI+ES+H+IL+NLK +VL+S+ YGT +ASI + GP VTAQD
Sbjct: 61 CITHAKLEKVTHEYSAIIGIEESVHDILINLKEIVLRSDPYGTREASICIVGPRNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V IID TQHIASLT+SI I L IE++RGYRI+ N+QDG +PIDAVFMPVR
Sbjct: 121 IILPPSVRIIDATQHIASLTKSITFDIRLWIEKDRGYRIQSPKNYQDGIFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
NAN+S+HSYGNGN+ QEILFLEIWTNGSL P+EAL+ ASRNLIDLFIPFL AEE+N+
Sbjct: 181 NANYSIHSYGNGNDIQEILFLEIWTNGSLAPREALYRASRNLIDLFIPFLRAEEQNIDGM 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
NQ+ +P F+F + + ++E+A K+IFIDQSEL P+ YNCL R NIHTLSDLLN
Sbjct: 241 DNQNGSNMPSFSFSNISADMERMEEEVAFKHIFIDQSELPPRVYNCLGRVNIHTLSDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKNK 338
SQEDLM+I +F V+ + +L +KHFA+DLPKNK
Sbjct: 301 YSQEDLMRIGHFGKKSVEQVSEVL--QKHFAVDLPKNK 336
>C3W1N1_LAROX (tr|C3W1N1) DNA-directed RNA polymerase subunit alpha OS=Larix
occidentalis GN=rpoA PE=3 SV=1
Length = 335
Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust.
Identities = 215/337 (63%), Positives = 272/337 (80%), Gaps = 2/337 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+++++S +TL+WKC+ESR +KRL+YGRF LSPL KG+ADTIGIAMRRALLGE+EGT
Sbjct: 1 MIRDEISVSIQTLRWKCIESRAYSKRLHYGRFALSPLRKGRADTIGIAMRRALLGEVEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K E I HE+S I GI+ES+H+ILMNLK +VL+S+ YG +ASIY+ GP VTAQD
Sbjct: 61 CITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+IID TQHIA LT+SI I L+IE+NRGY I NN+QDG +PIDAVFMPVR
Sbjct: 121 IILPPSVKIIDTTQHIARLTKSITSDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+AN+S+HSYG+GNE +E+LFLEIWTNG LTP+EAL+EASRNLIDL IPFLH EE+N+
Sbjct: 181 DANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQNIDGM 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+ +P F LT R+ +++IA K+IFIDQ EL P+TYNCL+R+NIHTL DLLN
Sbjct: 241 NNRKGSNMPPFPLSHVLTDTRETKEKIAFKHIFIDQLELPPRTYNCLRRANIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
S+EDLM+IE+F + V+ +L +L +K FAID P+N
Sbjct: 301 YSREDLMRIEHFGKESVEQVLEVL--QKRFAIDPPRN 335
>C3W219_PINMO (tr|C3W219) DNA-directed RNA polymerase subunit alpha OS=Pinus
monticola GN=rpoA PE=3 SV=1
Length = 335
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/337 (64%), Positives = 269/337 (79%), Gaps = 2/337 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+K+++S +TL+WKC+ESR +KRL+YGRF LSPL KG+ADTIGIAMRRALLGE+EGT
Sbjct: 1 MIRDKISVSIQTLRWKCIESRAYSKRLHYGRFALSPLRKGRADTIGIAMRRALLGEVEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K E I HE+S I GI+ES+H+ILMNLK +VL+S+ YG +ASIY+ GP VTAQD
Sbjct: 61 CITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+IID TQHIA LT+SI I LQIE+NRGY I +NN+QDG +PIDAVFMPVR
Sbjct: 121 IILPPSVKIIDTTQHIARLTKSITFDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+AN+S+HSYG+GNE QE+LFLEIWTNG LTP+EAL+EASRNLIDLFIPFLH EE+N+
Sbjct: 181 DANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGM 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+ + F LT + +++IA K+IFIDQ EL PKTYN L+R+NIHTL DLLN
Sbjct: 241 NNKKGSNMLPFPLSHVLTDTGETKEKIAFKHIFIDQLELPPKTYNSLRRANIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
S+EDLMKIE+ + V+ +L +L K FAID P+N
Sbjct: 301 YSREDLMKIEHLEKESVEQVLEVL--RKRFAIDPPRN 335
>C3W0T7_CEDDE (tr|C3W0T7) DNA-directed RNA polymerase subunit alpha OS=Cedrus
deodara GN=rpoA PE=3 SV=1
Length = 335
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 214/337 (63%), Positives = 271/337 (80%), Gaps = 2/337 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+++++S +TL+WKC+ESR +KRL+YGRF LSPL KG+ADTIGIAMRRALLGE+EGT
Sbjct: 1 MIRDEISVSIQTLRWKCIESRAYSKRLHYGRFALSPLRKGRADTIGIAMRRALLGEVEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K E I HE+S I GI+ES+H+ILMNLK +VL+S+ YG +ASIY+ GP VTAQD
Sbjct: 61 CITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGVREASIYIVGPRNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+IID TQHIA LT+SI I L+IE+NRGY I NN+QDG +PIDAVFMPVR
Sbjct: 121 IILPPSVKIIDTTQHIARLTKSITSDIKLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+AN+S+HSYG+GNE +E+LFLEIWTNG LTP+EAL+EASRNLIDLFIPFLH EE+N+
Sbjct: 181 DANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGM 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+ +P F LT + +++IA ++IFIDQ EL P+TYNCL+R+NIHTL DLLN
Sbjct: 241 NNRKGSNMPPFPLSHVLTDTGETKEKIAFQHIFIDQLELPPRTYNCLRRANIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
S+EDLM+IE+F + V+ +L +L K FAID P+N
Sbjct: 301 YSREDLMRIEHFGKESVEQVLEVL--RKRFAIDPPRN 335
>F0UWU2_PINLA (tr|F0UWU2) DNA-directed RNA polymerase subunit alpha 2 OS=Pinus
lambertiana GN=rpoA PE=3 SV=1
Length = 335
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/337 (64%), Positives = 269/337 (79%), Gaps = 2/337 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+K+++S +TL+WKC+ESR +KRL+YGRF LSPL KG+ADTIGIAMRRALLGE+EGT
Sbjct: 1 MIRDKISVSIQTLRWKCIESRAYSKRLHYGRFALSPLRKGRADTIGIAMRRALLGEVEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K E I HE+S I GI+ES+H+ILMNLK +VL+S+ YG +ASIY+ GP VTAQD
Sbjct: 61 CITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+IID TQHIA LT+SI I LQIE+NRGY I +NN+QDG +PIDAVFMPVR
Sbjct: 121 IILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+AN+S+HSYG+GNE QE+LFLEIWTNG LTP+EAL+EASRNLIDLFIPFLH EE+N+
Sbjct: 181 DANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGM 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+ + F LT + +++IA K+IFIDQ EL PKTYN L+R+NIHTL DLLN
Sbjct: 241 NNKKGSNMLPFPLSHVLTDTGETKEKIAFKHIFIDQLELPPKTYNSLRRANIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
S+EDLMKIE+ + V+ +L +L K FAID P+N
Sbjct: 301 YSREDLMKIEHLEKESVEQVLEVL--RKRFAIDPPRN 335
>C3W281_PINPR (tr|C3W281) DNA-directed RNA polymerase subunit alpha OS=Pinus
parviflora var. pentaphylla GN=rpoA PE=3 SV=1
Length = 335
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/337 (64%), Positives = 269/337 (79%), Gaps = 2/337 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+K+++S +TL+WKC+ESR +KRL+YGRF LSPL KG+ADTIGIAMRRALLGE+EGT
Sbjct: 1 MIRDKISVSIQTLRWKCIESRAYSKRLHYGRFALSPLRKGRADTIGIAMRRALLGEVEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K E I HE+S I GI+ES+H+ILMNLK +VL+S+ YG +ASIY+ GP VTAQD
Sbjct: 61 CITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+IID TQHIA LT+SI I LQIE+NRGY I +NN+QDG +PIDAVFMPVR
Sbjct: 121 IILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+AN+S+HSYG+GNE QE+LFLEIWTNG LTP+EAL+EASRNLIDLFIPFLH EE+N+
Sbjct: 181 DANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGM 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+ + F LT + +++IA K+IFIDQ EL PKTYN L+R+NIHTL DLLN
Sbjct: 241 NNKKGSNMLPFPLSHVLTDTGETKEKIAFKHIFIDQLELPPKTYNSLRRANIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
S+EDLMKIE+ + V+ +L +L K FAID P+N
Sbjct: 301 YSREDLMKIEHLEKESVEQVLEVL--RKRFAIDPPRN 335
>C3W0Z4_PINCE (tr|C3W0Z4) DNA-directed RNA polymerase subunit alpha OS=Pinus
cembra GN=rpoA PE=3 SV=1
Length = 335
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/337 (64%), Positives = 269/337 (79%), Gaps = 2/337 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+K+++S +TL+WKC+ESR +KRL+YGRF LSPL KG+ADTIGIAMRRALLGE+EGT
Sbjct: 1 MIRDKISVSIQTLRWKCIESRAYSKRLHYGRFALSPLRKGRADTIGIAMRRALLGEVEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K E I HE+S I GI+ES+H+ILMNLK +VL+S+ YG +ASIY+ GP VTAQD
Sbjct: 61 CITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+IID TQHIA LT+SI I LQIE+NRGY I +NN+QDG +PIDAVFMPVR
Sbjct: 121 IILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+AN+S+HSYG+GNE QE+LFLEIWTNG LTP+EAL+EASRNLIDLFIPFLH EE+N+
Sbjct: 181 DANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGM 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+ + F LT + +++IA K+IFIDQ EL PKTYN L+R+NIHTL DLLN
Sbjct: 241 NNKKGSNMLPFPLSHVLTDTGETKEKIAFKHIFIDQLELPPKTYNSLRRANIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
S+EDLMKIE+ + V+ +L +L K FAID P+N
Sbjct: 301 YSREDLMKIEHLEKESVEQVLEVL--RKRFAIDPPRN 335
>C3VZY0_PINAR (tr|C3VZY0) DNA-directed RNA polymerase subunit alpha OS=Pinus
armandii GN=rpoA PE=3 SV=1
Length = 335
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/337 (64%), Positives = 269/337 (79%), Gaps = 2/337 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+K+++S +TL+WKC+ESR +KRL+YGRF LSPL KG+ADTIGIAMRRALLGE+EGT
Sbjct: 1 MIRDKISVSIQTLRWKCIESRAYSKRLHYGRFALSPLRKGRADTIGIAMRRALLGEVEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K E I HE+S I GI+ES+H+ILMNLK +VL+S+ YG +ASIY+ GP VTAQD
Sbjct: 61 CITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+IID TQHIA LT+SI I LQIE+NRGY I +NN+QDG +PIDAVFMPVR
Sbjct: 121 IILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+AN+S+HSYG+GNE QE+LFLEIWTNG LTP+EAL+EASRNLIDLFIPFLH EE+N+
Sbjct: 181 DANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGM 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+ + F LT + +++IA K+IFIDQ EL PKTYN L+R+NIHTL DLLN
Sbjct: 241 NNKKGSNMLPFPLSHVLTDTGETKEKIAFKHIFIDQLELPPKTYNSLRRANIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
S+EDLMKIE+ + V+ +L +L K FAID P+N
Sbjct: 301 YSREDLMKIEHLEKESVEQVLEVL--RKRFAIDPPRN 335
>C3VY52_PINSI (tr|C3VY52) DNA-directed RNA polymerase subunit alpha OS=Pinus
sibirica GN=rpoA PE=3 SV=1
Length = 335
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/337 (64%), Positives = 269/337 (79%), Gaps = 2/337 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+K+++S +TL+WKC+ESR +KRL+YGRF LSPL KG+ADTIGIAMRRALLGE+EGT
Sbjct: 1 MIRDKISVSIQTLRWKCIESRAYSKRLHYGRFALSPLRKGRADTIGIAMRRALLGEVEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K E I HE+S I GI+ES+H+ILMNLK +VL+S+ YG +ASIY+ GP VTAQD
Sbjct: 61 CITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+IID TQHIA LT+SI I LQIE+NRGY I +NN+QDG +PIDAVFMPVR
Sbjct: 121 IILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+AN+S+HSYG+GNE QE+LFLEIWTNG LTP+EAL+EASRNLIDLFIPFLH EE+N+
Sbjct: 181 DANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGM 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+ + F LT + +++IA K+IFIDQ EL PKTYN L+R+NIHTL DLLN
Sbjct: 241 NNKKGSNMLPFPLSHVLTDTGETKEKIAFKHIFIDQLELPPKTYNSLRRANIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
S+EDLMKIE+ + V+ +L +L K FAID P+N
Sbjct: 301 YSREDLMKIEHLEKESVEQVLEVL--RKRFAIDPPRN 335
>C3VYB7_9CONI (tr|C3VYB7) DNA-directed RNA polymerase subunit alpha OS=Pinus
squamata GN=rpoA PE=3 SV=1
Length = 335
Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust.
Identities = 215/337 (63%), Positives = 270/337 (80%), Gaps = 2/337 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+++++S +TL+WKC+ESR +KRL+YGRF LSPL KG+ADTIGIAMRRALLGE+EGT
Sbjct: 1 MIRDEISVSIQTLRWKCIESRAYSKRLHYGRFALSPLRKGRADTIGIAMRRALLGEVEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K E I HE+S I GI+ES+H+ILMNLK +VL+S+ YG +ASIY+ GP VTAQD
Sbjct: 61 CITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+IID TQHIA LT+SI I LQIE+NRGY I +NN+QDG +PIDAVFMPVR
Sbjct: 121 IILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+AN+S+HSYG+GNE QE+LFLEIWTNG LTP+EAL+EASRNLIDLFIPFLH EE+N+
Sbjct: 181 DANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGM 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+ + F LT R+ +++IA ++IFIDQ EL PKTYN L+R+NIHTL DLLN
Sbjct: 241 NNKKGSNMLPFPLSHVLTDTRETKEKIAFQHIFIDQLELPPKTYNSLRRANIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
S+EDLM+IE+ + V+ +L +L K FAID P+N
Sbjct: 301 YSREDLMRIEHLEKESVEQVLEVL--RKRFAIDPPRN 335
>C3W2E4_PINPE (tr|C3W2E4) DNA-directed RNA polymerase subunit alpha OS=Pinus
peuce GN=rpoA PE=3 SV=1
Length = 335
Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust.
Identities = 216/337 (64%), Positives = 269/337 (79%), Gaps = 2/337 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+K+++S +TL+WKC+ESR +KRL+YGRF LSPL KG+ADTIGIAMRRALLGE+EGT
Sbjct: 1 MIRDKISVSIQTLRWKCIESRAYSKRLHYGRFALSPLRKGRADTIGIAMRRALLGEVEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K E I HE+S I GI+ES+H+ILMNLK +VL+S+ YG +ASIY+ GP VTAQD
Sbjct: 61 CITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+IID TQHIA LT+SI I LQIE+NRGY I +NN+QDG +PIDAVFMPVR
Sbjct: 121 IILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+AN+S+HSYG+GNE QE+LFLEIWTNG LTP+EAL+EASRNLIDLFIPFLH EE+N+
Sbjct: 181 DANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGM 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+ + F LT + +++IA ++IFIDQ EL PKTYN L+R+NIHTL DLLN
Sbjct: 241 NNKKGSNMLPFPLSHVLTDTGETKEKIAFQHIFIDQLELPPKTYNSLRRANIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
S+EDLMKIE+ + V+ +L +L K FAID P+N
Sbjct: 301 YSREDLMKIEHLEKESVEQVLEVL--RKRFAIDPPRN 335
>C3VZJ9_9CONI (tr|C3VZJ9) DNA-directed RNA polymerase subunit alpha OS=Pinus
albicaulis GN=rpoA PE=3 SV=1
Length = 335
Score = 441 bits (1134), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/339 (64%), Positives = 273/339 (80%), Gaps = 6/339 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+K+++S +TL+WKC+ESR +KRL+YGRF LSPL KG+ADTIGIAMRRALLGE+EGT
Sbjct: 1 MIRDKISVSIQTLRWKCIESRAYSKRLHYGRFALSPLRKGRADTIGIAMRRALLGEVEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K E I HE+S I GI+ES+H+ILMNLK +VL+S+ YG +ASIY+ GP VTAQD
Sbjct: 61 CITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+IID TQHIA LT+SI I LQIE+NRGY I +NN+QDG +PIDAVFMPVR
Sbjct: 121 IILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+AN+S+HSYG+GNE QE+LFLEIWTNG LTP+EAL+EASRNLIDLFIPFLH EE+N+
Sbjct: 181 DANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNID-G 239
Query: 241 INQHKVT--LPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDL 298
+N+ K + LP F LT + +++IA K+IFIDQ EL PKTYN L+R+NIHTL DL
Sbjct: 240 MNKKKGSNMLP-FPLSHVLTDTGETKEKIAFKHIFIDQLELPPKTYNSLRRANIHTLLDL 298
Query: 299 LNKSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
LN S+EDLMKIE+ + V+ +L +L K FAID P+N
Sbjct: 299 LNYSREDLMKIEHLEKESVEQVLEVL--RKRFAIDPPRN 335
>C3W1H9_PINLA (tr|C3W1H9) DNA-directed RNA polymerase subunit alpha 1 OS=Pinus
lambertiana GN=rpoA PE=3 SV=1
Length = 335
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/337 (63%), Positives = 269/337 (79%), Gaps = 2/337 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+++++S +TL+WKC+ESR +KRL+YGRF LSPL KG+ADTIGIAMRRALLGE+EGT
Sbjct: 1 MIRDEISVSIQTLRWKCIESRAYSKRLHYGRFALSPLRKGRADTIGIAMRRALLGEVEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K E I HE+S I GI+ES+H+ILMNLK +VL+S+ YG +ASIY+ GP VTAQD
Sbjct: 61 CITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+IID TQHIA LT+SI I LQIE+NRGY I +NN+QDG +PIDAVFMPVR
Sbjct: 121 IILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+AN+S+HSYG+GNE QE+LFLEIWTNG LTP+EAL+EASRNLIDLFIPFLH EE+N+
Sbjct: 181 DANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGM 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+ + F LT + +++IA ++IFIDQ EL PKTYN L+R+NIHTL DLLN
Sbjct: 241 NNKKGSNMLPFPLSHVLTDTGETKEKIAFQHIFIDQLELPPKTYNSLRRANIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
S+EDLMKIE+ + V+ +L +L K FAID P+N
Sbjct: 301 YSREDLMKIEHLEKESVEQVLEVL--RKRFAIDPPRN 335
>C3W1B5_9CONI (tr|C3W1B5) DNA-directed RNA polymerase subunit alpha OS=Pinus
flexilis GN=rpoA PE=3 SV=1
Length = 335
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/337 (63%), Positives = 269/337 (79%), Gaps = 2/337 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+++++S +TL+WKC+ESR +KRL+YGRF LSPL KG+ADTIGIAMRRALLGE+EGT
Sbjct: 1 MIRDEISVSIQTLRWKCIESRAYSKRLHYGRFALSPLRKGRADTIGIAMRRALLGEVEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K E I HE+S I GI+ES+H+ILMNLK +VL+S+ YG +ASIY+ GP VTAQD
Sbjct: 61 CITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+IID TQHIA LT+SI I LQIE+NRGY I +NN+QDG +PIDAVFMPVR
Sbjct: 121 IILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+AN+S+HSYG+GNE QE+LFLEIWTNG LTP+EAL+EASRNLIDLFIPFLH EE+N+
Sbjct: 181 DANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGM 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+ + F LT + +++IA ++IFIDQ EL PKTYN L+R+NIHTL DLLN
Sbjct: 241 NNKKGSNMLPFPLSHVLTDTGETKEKIAFQHIFIDQLELPPKTYNSLRRANIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
S+EDLMKIE+ + V+ +L +L K FAID P+N
Sbjct: 301 YSREDLMKIEHLEKESVEQVLEVL--RKRFAIDPPRN 335
>C3W0A1_9CONI (tr|C3W0A1) DNA-directed RNA polymerase subunit alpha OS=Pinus
ayacahuite GN=rpoA PE=3 SV=1
Length = 335
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/337 (63%), Positives = 269/337 (79%), Gaps = 2/337 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+++++S +TL+WKC+ESR +KRL+YGRF LSPL KG+ADTIGIAMRRALLGE+EGT
Sbjct: 1 MIRDEISVSIQTLRWKCIESRAYSKRLHYGRFALSPLRKGRADTIGIAMRRALLGEVEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K E I HE+S I GI+ES+H+ILMNLK +VL+S+ YG +ASIY+ GP VTAQD
Sbjct: 61 CITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+IID TQHIA LT+SI I LQIE+NRGY I +NN+QDG +PIDAVFMPVR
Sbjct: 121 IILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+AN+S+HSYG+GNE QE+LFLEIWTNG LTP+EAL+EASRNLIDLFIPFLH EE+N+
Sbjct: 181 DANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGM 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+ + F LT + +++IA ++IFIDQ EL PKTYN L+R+NIHTL DLLN
Sbjct: 241 NNKKGSNMLPFPLSHVLTDTGETKEKIAFQHIFIDQLELPPKTYNSLRRANIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
S+EDLMKIE+ + V+ +L +L K FAID P+N
Sbjct: 301 YSREDLMKIEHLEKESVEQVLEVL--RKRFAIDPPRN 335
>C3VYH6_PINST (tr|C3VYH6) DNA-directed RNA polymerase subunit alpha OS=Pinus
strobus GN=rpoA PE=3 SV=1
Length = 335
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/337 (63%), Positives = 269/337 (79%), Gaps = 2/337 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+++++S +TL+WKC+ESR +KRL+YGRF LSPL KG+ADTIGIAMRRALLGE+EGT
Sbjct: 1 MIRDEISVSIQTLRWKCIESRAYSKRLHYGRFALSPLRKGRADTIGIAMRRALLGEVEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K E I HE+S I GI+ES+H+ILMNLK +VL+S+ YG +ASIY+ GP VTAQD
Sbjct: 61 CITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+IID TQHIA LT+SI I LQIE+NRGY I +NN+QDG +PIDAVFMPVR
Sbjct: 121 IILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+AN+S+HSYG+GNE QE+LFLEIWTNG LTP+EAL+EASRNLIDLFIPFLH EE+N+
Sbjct: 181 DANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGM 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+ + F LT + +++IA ++IFIDQ EL PKTYN L+R+NIHTL DLLN
Sbjct: 241 NNKKGSNMLPFPLSHVLTDTGETKEKIAFQHIFIDQLELPPKTYNSLRRANIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
S+EDLMKIE+ + V+ +L +L K FAID P+N
Sbjct: 301 YSREDLMKIEHLEKESVEQVLEVL--RKRFAIDPPRN 335
>Q2LIP2_9ORYZ (tr|Q2LIP2) RNA polymerase subunit (Fragment) OS=Oryza rhizomatis
GN=rpoA PE=3 SV=1
Length = 317
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/319 (67%), Positives = 254/319 (79%), Gaps = 2/319 (0%)
Query: 21 RTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEFSTIAGI 80
R D+KRLYYGRFILSPL KGQADT+GIA+RRALLGE EGTCIT AK +PHE+STIAGI
Sbjct: 1 RVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGETEGTCITHAKFGSVPHEYSTIAGI 60
Query: 81 QESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQDIILPPFVEIIDNTQHIASLT 140
+ES+ EIL+NLK +VL+SNLYG +ASI VKGP Y+TAQDIILPP VEI+D Q IA+LT
Sbjct: 61 EESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQDIILPPSVEIVDTAQPIANLT 120
Query: 141 ESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVRNANHSVHSYGNGNEKQEILF 200
E D I L+I+R+RGY + N QDGSYPIDAV MPVRN N+S+ S GNGN K EILF
Sbjct: 121 EPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFSCGNGNAKYEILF 180
Query: 201 LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLEINQHKVTLPLFTFHGRLTKL 260
LEIWTNGSLTPKEAL+EASRNLIDLF+PFLH EEE + NQ++ T PL +F RLT L
Sbjct: 181 LEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENQNRFTSPLLSFQKRLTNL 240
Query: 261 RKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLNKSQEDLMKIENFRIDDVKHI 320
+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+K++EDLM+I++FR+ D K I
Sbjct: 241 KKNKKRIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQI 300
Query: 321 LGILEIEKHFAIDLPKNKI 339
L EKH +DLPKNK
Sbjct: 301 WDTL--EKHLPMDLPKNKF 317
>C1IXV8_PINGE (tr|C1IXV8) DNA-directed RNA polymerase subunit alpha OS=Pinus
gerardiana GN=rpoA PE=3 SV=1
Length = 335
Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/337 (63%), Positives = 268/337 (79%), Gaps = 2/337 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+K+++S +TL+WKC+ESR +KRL+YGRF LSPL KG+ADTIGIAMRRALLGE+EGT
Sbjct: 1 MIRDKISVSIQTLRWKCIESRAYSKRLHYGRFALSPLRKGRADTIGIAMRRALLGEVEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K E I HE+S I GI+ES+H+ILMNLK +VL+S+ YG +ASIY+ GP VTAQD
Sbjct: 61 CITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+IID TQHIA LT+SI I LQIE+NRGY I +NN+QDG +PIDAVFMPVR
Sbjct: 121 IILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+ N+S+HSYG+GNE QE+LFLEIWTNG LTP+EAL+EASRNLIDLFIPFLH EE+N+
Sbjct: 181 DVNYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGM 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+ + F LT + +++IA ++IFIDQ EL PKTYN L+R+NIHTL DLLN
Sbjct: 241 NNKKGSNMLPFPLSHVLTDTGETKEKIAFQHIFIDQLELPPKTYNSLRRANIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
S+EDLM+IE+ + V+ +L +L K FAID P+N
Sbjct: 301 YSREDLMRIEHLEKESVEQVLEVL--RKRFAIDPPRN 335
>Q2LIN9_9ORYZ (tr|Q2LIN9) RNA polymerase subunit (Fragment) OS=Oryza granulata
GN=rpoA PE=3 SV=1
Length = 317
Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/319 (67%), Positives = 256/319 (80%), Gaps = 2/319 (0%)
Query: 21 RTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEFSTIAGI 80
R D+KRLYYGRFILSPL KGQADT+GIA+RRALLGE EGTCIT AK +PHE+STIAGI
Sbjct: 1 RVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGETEGTCITHAKFGSVPHEYSTIAGI 60
Query: 81 QESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQDIILPPFVEIIDNTQHIASLT 140
+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQDIILPP VEI+D Q IA+LT
Sbjct: 61 EESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIVDMAQPIANLT 120
Query: 141 ESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVRNANHSVHSYGNGNEKQEILF 200
E +D I L+I+R+RGY + N QDGSYPIDAV MPVRN N+S+ S GNGN K EILF
Sbjct: 121 EPMDFRIELRIKRDRGYHTEVRKNAQDGSYPIDAVSMPVRNVNYSIFSCGNGNAKYEILF 180
Query: 201 LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLEINQHKVTLPLFTFHGRLTKL 260
LEIWTNGSLTPKEAL+EASRNLIDLF+PFLH EEE + N+++ T PL +F RLT L
Sbjct: 181 LEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNL 240
Query: 261 RKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLNKSQEDLMKIENFRIDDVKHI 320
+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+K++EDLM+I++FR+ D K I
Sbjct: 241 KKNKKRIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQI 300
Query: 321 LGILEIEKHFAIDLPKNKI 339
L EK+ +DLPKNK+
Sbjct: 301 WDTL--EKYLPMDLPKNKL 317
>B7ZIR8_KETDA (tr|B7ZIR8) DNA-directed RNA polymerase subunit alpha OS=Keteleeria
davidiana GN=rpoA PE=3 SV=1
Length = 336
Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/339 (63%), Positives = 272/339 (80%), Gaps = 5/339 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+++++S +TL+WKC+ESR +KRL+YGRF LSPL KG+ADTIGIAMRRALLGE+EGT
Sbjct: 1 MIRDEISVSIQTLRWKCIESRAYSKRLHYGRFALSPLRKGRADTIGIAMRRALLGEVEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR E I HE+S I GI+ES+H+ILMNLK +VL+S+ YG +ASIY+ GP VTAQD
Sbjct: 61 CITRVTLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+IID TQHIA LT+SI I L+IE+NRGY I NN+QDG +PIDAVFMPVR
Sbjct: 121 IILPPSVKIIDTTQHIARLTKSITFDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+AN+S+HSYG+GNE +E+LFLEIWTNG LTP+EAL+EASRNLID FIPFLH EE+N+
Sbjct: 181 DANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDFFIPFLHGEEQNID-G 239
Query: 241 INQHKVT--LPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDL 298
IN K + +P F LT + +++IA ++IFIDQ EL P+TYNCL+R+NIHTL DL
Sbjct: 240 INNRKGSSNMPPFPLLHVLTDTGETKEKIAFQHIFIDQLELPPRTYNCLRRANIHTLLDL 299
Query: 299 LNKSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
LN S+EDLM++E+F + V+ +L +L K FAIDLP+N
Sbjct: 300 LNYSREDLMRMEHFGKESVEQVLEVL--RKRFAIDLPRN 336
>E1CH55_LARDC (tr|E1CH55) DNA-directed RNA polymerase subunit alpha OS=Larix
decidua GN=rpoA PE=3 SV=1
Length = 335
Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust.
Identities = 212/337 (62%), Positives = 270/337 (80%), Gaps = 2/337 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+++++S +TL+WKC+ESR +KRL+YGRF LSPL KG+ADTIGIAMRRALLGE+EGT
Sbjct: 1 MIRDEISVSIQTLRWKCIESRAYSKRLHYGRFALSPLRKGRADTIGIAMRRALLGEVEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K E I HE+S I GI+ES+H+ILMNLK +VL+S+ YG +ASIY+ GP VTAQD
Sbjct: 61 CITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+IID TQHIA LT+SI I L+IE+NRGY I NN+QDG +PIDAVFMPV
Sbjct: 121 IILPPSVKIIDTTQHIARLTKSITSDIRLRIEKNRGYIIHSPNNYQDGIFPIDAVFMPVP 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+AN+S+HSYG+ NE +E+LFLEIWTNG LTP+EAL+EASRNLIDL IPFLH EE+N+
Sbjct: 181 DANYSIHSYGSRNEIREVLFLEIWTNGGLTPREALYEASRNLIDLLIPFLHGEEQNIDGM 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+ +P F LT R+ +++IA ++IFIDQ EL P+TYNCL+R+NIHTL DLLN
Sbjct: 241 NNRKGSNMPPFPLSHVLTDTRETKEKIAFQHIFIDQLELPPRTYNCLRRANIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
S+EDLM+IE+F + V+ +L +L +K FAID P+N
Sbjct: 301 YSREDLMRIEHFGKESVEQVLEVL--QKRFAIDPPRN 335
>F0UX83_9CONI (tr|F0UX83) DNA-directed RNA polymerase subunit alpha OS=Pinus
nelsonii GN=rpoA PE=3 SV=1
Length = 335
Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/339 (64%), Positives = 273/339 (80%), Gaps = 6/339 (1%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+++++S +TL+WKC+ESR +KRL+YGRF LSPL KG+ADTIGIAMRRALLGE+EGT
Sbjct: 1 MIRDEISVSIQTLRWKCIESRAYSKRLHYGRFALSPLRKGRADTIGIAMRRALLGEVEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K E I HE+S I GI+ES+H+ILMNLK +VL+S+ YG +ASIY+ GP VTAQD
Sbjct: 61 CITRVKLENIKHEYSAIIGIKESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+IID TQHIA LT+SI I LQIE+NRGY I +NN+QDG +PIDAVFMPVR
Sbjct: 121 IILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+AN+S+HSYGNGNE QE+LFLEIWTNG LTP+EAL+EASRNLIDLFIPFLH EE+N+
Sbjct: 181 DANYSIHSYGNGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNID-G 239
Query: 241 INQHKVT--LPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDL 298
+N+ K + LP F LT + +++IA ++IFIDQ EL PKTYN L+R+NIHTL DL
Sbjct: 240 MNKKKGSNMLP-FPLSHVLTDTGETKEKIAFQHIFIDQLELPPKTYNSLRRANIHTLLDL 298
Query: 299 LNKSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
LN S+EDLM+IE+ + V+ +L +L K FAID P+N
Sbjct: 299 LNYSREDLMRIEHLGKESVEQVLEVL--RKRFAIDPPRN 335
>C3VZ84_PINTO (tr|C3VZ84) DNA-directed RNA polymerase subunit alpha OS=Pinus
torreyana subsp. torreyana GN=rpoA PE=3 SV=1
Length = 335
Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/337 (63%), Positives = 269/337 (79%), Gaps = 2/337 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+++++S +TL+WKC+ESR +KRL+YGRF LSPL KG+ADTIGIAMRRALLGE+EGT
Sbjct: 1 MIRDEISVSIQTLRWKCIESRAYSKRLHYGRFALSPLRKGRADTIGIAMRRALLGEVEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K E I HE+S I GI+ES+H+ILMNLK +VL+S+ YG +ASIY+ GP VTAQD
Sbjct: 61 CITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+IID TQHIA LT+SI I LQIE+NRGY I NN+QDG +PIDAVFMPVR
Sbjct: 121 IILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+AN+S+HSYG+GNE +E+LFLEIWTNG LTP+EAL+EASRNLIDLFIPFLH EE+N+
Sbjct: 181 DANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGM 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+ + F LT + +++IA + IFIDQ EL PKTYN L+R+NIHTL DLLN
Sbjct: 241 NNKKGSNMLPFPLSHLLTDTGETKEKIAFQLIFIDQLELPPKTYNSLRRANIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
S+EDLM+IE+F + V+ +L +L +K FAID PKN
Sbjct: 301 YSREDLMRIEHFGKESVEQVLEVL--QKLFAIDPPKN 335
>C3VZ24_PINTO (tr|C3VZ24) DNA-directed RNA polymerase subunit alpha OS=Pinus
torreyana subsp. insularis GN=rpoA PE=3 SV=1
Length = 335
Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/337 (63%), Positives = 269/337 (79%), Gaps = 2/337 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+++++S +TL+WKC+ESR +KRL+YGRF LSPL KG+ADTIGIAMRRALLGE+EGT
Sbjct: 1 MIRDEISVSIQTLRWKCIESRAYSKRLHYGRFALSPLRKGRADTIGIAMRRALLGEVEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K E I HE+S I GI+ES+H+ILMNLK +VL+S+ YG +ASIY+ GP VTAQD
Sbjct: 61 CITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+IID TQHIA LT+SI I LQIE+NRGY I NN+QDG +PIDAVFMPVR
Sbjct: 121 IILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+AN+S+HSYG+GNE +E+LFLEIWTNG LTP+EAL+EASRNLIDLFIPFLH EE+N+
Sbjct: 181 DANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGM 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+ + F LT + +++IA + IFIDQ EL PKTYN L+R+NIHTL DLLN
Sbjct: 241 NNKKGSNMLPFPLSHLLTDTGETKEKIAFQLIFIDQLELPPKTYNSLRRANIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
S+EDLM+IE+F + V+ +L +L +K FAID PKN
Sbjct: 301 YSREDLMRIEHFGKESVEQVLEVL--QKLFAIDPPKN 335
>Q2LIP3_9ORYZ (tr|Q2LIP3) RNA polymerase subunit (Fragment) OS=Oryza officinalis
GN=rpoA PE=3 SV=1
Length = 317
Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/319 (67%), Positives = 254/319 (79%), Gaps = 2/319 (0%)
Query: 21 RTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEFSTIAGI 80
R D+KRLYYGRFILSPL KGQADT+GIA+RRALLGE EGTCIT AK +PHE+STIAGI
Sbjct: 1 RVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGETEGTCITHAKFGSVPHEYSTIAGI 60
Query: 81 QESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQDIILPPFVEIIDNTQHIASLT 140
+ES+ EIL+NLK +VL+SNLYG +ASI VKGP Y+TAQDIILPP VEI+D Q IA+LT
Sbjct: 61 EESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQDIILPPSVEIVDTAQPIANLT 120
Query: 141 ESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVRNANHSVHSYGNGNEKQEILF 200
E D I L+I+R+RGY + N QDGSYPIDAV MPVRN N+S+ S GNGN K EILF
Sbjct: 121 EPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFSCGNGNAKYEILF 180
Query: 201 LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLEINQHKVTLPLFTFHGRLTKL 260
LEIWTNGSLTPKEAL+EASRNLIDLF+PFLH EEE + N+++ T PL +F RLT L
Sbjct: 181 LEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNL 240
Query: 261 RKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLNKSQEDLMKIENFRIDDVKHI 320
+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+K++EDLM+I++FR+ D K I
Sbjct: 241 KKNKKRIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQI 300
Query: 321 LGILEIEKHFAIDLPKNKI 339
L EKH +DLPKNK
Sbjct: 301 WDTL--EKHLPMDLPKNKF 317
>Q2LIP0_9ORYZ (tr|Q2LIP0) RNA polymerase subunit (Fragment) OS=Oryza
australiensis GN=rpoA PE=3 SV=1
Length = 317
Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/319 (67%), Positives = 254/319 (79%), Gaps = 2/319 (0%)
Query: 21 RTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEFSTIAGI 80
R D+KRLYYGRFILSPL KGQADT+GIA+RRALLGE EGTCIT AK +PHE+STIAGI
Sbjct: 1 RVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGETEGTCITHAKFGSVPHEYSTIAGI 60
Query: 81 QESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQDIILPPFVEIIDNTQHIASLT 140
+ES+ EIL+NLK +VL+SNLYG +ASI VKGP Y+TAQDIILPP VEI+D Q IA+LT
Sbjct: 61 EESVQEILLNLKEIVLRSNLYGVRNASICVKGPRYITAQDIILPPSVEIVDTAQPIANLT 120
Query: 141 ESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVRNANHSVHSYGNGNEKQEILF 200
E D I L+I+R+RGY + N QDGSYPIDAV MPVRN N+S+ S GNGN K EILF
Sbjct: 121 EPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVRNVNYSIFSCGNGNAKYEILF 180
Query: 201 LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLEINQHKVTLPLFTFHGRLTKL 260
LEIWTNGSLTPKEAL+EASRNLIDLF+PFLH EEE + N+++ T PL +F RLT L
Sbjct: 181 LEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNRFTSPLLSFQKRLTNL 240
Query: 261 RKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLNKSQEDLMKIENFRIDDVKHI 320
+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+K++EDLM+I++FR+ D K I
Sbjct: 241 KKNKKRIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMQDGKQI 300
Query: 321 LGILEIEKHFAIDLPKNKI 339
L EKH +DLPKNK
Sbjct: 301 WDTL--EKHLPMDLPKNKF 317
>D8WMT7_9POAL (tr|D8WMT7) RNA polymerase alpha subunit (Fragment) OS=Pappostipa
vaginata GN=rpoA PE=3 SV=1
Length = 319
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 223/319 (69%), Positives = 263/319 (82%), Gaps = 2/319 (0%)
Query: 21 RTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEFSTIAGI 80
R D+KRLYYGRFILSPL KGQAD +GIA+RRALL EIEGTCITRAK +PHE+STIAGI
Sbjct: 1 RVDSKRLYYGRFILSPLRKGQADPVGIALRRALLXEIEGTCITRAKFGSVPHEYSTIAGI 60
Query: 81 QESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQDIILPPFVEIIDNTQHIASLT 140
+ES+ EIL+NLK +VL+SNLYG DASI VKGP Y+TAQDIILPP VEI D Q IA+LT
Sbjct: 61 EESVQEILLNLKEIVLRSNLYGVRDASICVKGPRYITAQDIILPPSVEIXDTAQPIANLT 120
Query: 141 ESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVRNANHSVHSYGNGNEKQEILF 200
E IDLCI LQI+R+RGY+ + NN+QDGSYPIDAV MPVRN N+S+ S GNGNEK EILF
Sbjct: 121 EPIDLCIELQIKRDRGYQTELRNNYQDGSYPIDAVSMPVRNVNYSIFSCGNGNEKPEILF 180
Query: 201 LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLEINQHKVTLPLFTFHGRLTKL 260
LEIWTNGSLTPKEAL+EASRNLIDLF+PFLHAEEE E N+++ T PLFTF +LT L
Sbjct: 181 LEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGTSFEENKNRFTPPLFTFQKKLTNL 240
Query: 261 RKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLNKSQEDLMKIENFRIDDVKHI 320
+KN+K I L IFIDQ EL +TYNCLKR+NIHTL DLL+K++EDLM+I++FR++D K I
Sbjct: 241 KKNKKGIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLSKTEEDLMRIDSFRMEDGKQI 300
Query: 321 LGILEIEKHFAIDLPKNKI 339
+EKH I+L KNK+
Sbjct: 301 WD--NLEKHLPINLLKNKL 317
>C3W041_PINAT (tr|C3W041) DNA-directed RNA polymerase subunit alpha OS=Pinus
attenuata GN=rpoA PE=3 SV=1
Length = 335
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 214/337 (63%), Positives = 269/337 (79%), Gaps = 2/337 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+++++S +TL+WKC+ESR +KRL+YGRF LSPL KG+ADTIGIAMRRALLGE+EGT
Sbjct: 1 MIRDEISVSIQTLRWKCIESRAYSKRLHYGRFALSPLRKGRADTIGIAMRRALLGEVEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K E I HE+S I GI+ES+H+ILMNLK +VL+S+ YG +ASIY+ GP VTAQD
Sbjct: 61 CITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+IID TQHIA LT+SI I LQIE+NRGY I NN+QDG +PIDAVFMPVR
Sbjct: 121 IILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+AN+S+HSYG+GNE +E+LFLEIWTNG LTP+EAL+EASRNLIDLFIPFLH EE+N+
Sbjct: 181 DANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGM 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+ + F LT + +++IA + IFIDQ EL PKTYN L+R+NIHTL DLLN
Sbjct: 241 NNKKGSNMLPFPLSHLLTDTGETKEKIAFQLIFIDQLELPPKTYNSLRRANIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
S+EDLM+IE+F + V+ +L +L +K FAID P+N
Sbjct: 301 YSREDLMRIEHFGKESVEQVLEVL--QKLFAIDPPRN 335
>C3VXH3_PINPO (tr|C3VXH3) DNA-directed RNA polymerase subunit alpha OS=Pinus
ponderosa GN=rpoA PE=3 SV=1
Length = 335
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 214/337 (63%), Positives = 269/337 (79%), Gaps = 2/337 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+++++S +TL+WKC+ESR +KRL+YGRF LSPL KG+ADTIGIAMRRALLGE+EGT
Sbjct: 1 MIRDEISVSIQTLRWKCIESRAYSKRLHYGRFALSPLRKGRADTIGIAMRRALLGEVEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K E I HE+S I GI+ES+H+ILMNLK +VL+S+ YG +ASIY+ GP VTAQD
Sbjct: 61 CITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPRNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+IID TQHIA LT+SI I LQIE+NRGY I NN+QDG +PIDAVFMPVR
Sbjct: 121 IILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSPNNYQDGIFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+AN+S+HSYG+GNE +E+LFLEIWTNG LTP+EAL+EASRNLIDLFIPFLH EE+N+
Sbjct: 181 DANYSIHSYGSGNEIREVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGM 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+ + F LT + +++IA + IFIDQ EL PKTYN L+R+NIHTL DLLN
Sbjct: 241 NNKKGSNMLPFPLSHLLTDTGETKEKIAFQLIFIDQLELPPKTYNSLRRANIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
S+EDLM+IE+F + V+ +L +L +K FAID P+N
Sbjct: 301 YSREDLMRIEHFGKESVEQVLEVL--QKLFAIDPPRN 335
>C3TSB3_PINKR (tr|C3TSB3) DNA-directed RNA polymerase subunit alpha OS=Pinus
krempfii GN=rpoA PE=3 SV=1
Length = 335
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 213/337 (63%), Positives = 268/337 (79%), Gaps = 2/337 (0%)
Query: 1 MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
M+R+++++S +TL+WKC+ESR +KRL+YGRF LSPL KG+ADTIGIAMRRALLGE+EGT
Sbjct: 1 MIRDEISVSIQTLRWKCIESRAYSKRLHYGRFALSPLRKGRADTIGIAMRRALLGEVEGT 60
Query: 61 CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
CITR K E I HE+S I GI+ES+H+ILMNLK +VL+S+ YG +ASIY+ GP VTAQD
Sbjct: 61 CITRVKLENIKHEYSAIIGIEESVHDILMNLKEIVLRSDSYGIREASIYIVGPKNVTAQD 120
Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
IILPP V+IID TQHIA LT+SI I LQIE+NRGY I +NN+QDG +PIDAVFMPVR
Sbjct: 121 IILPPSVKIIDTTQHIARLTKSITSDIRLQIEKNRGYIIHSSNNYQDGIFPIDAVFMPVR 180
Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
+AN+S+HSYG+GNE QE+LFLEIWTNG LTP+EAL+EASRNLIDLFIPFLH EE+N+
Sbjct: 181 DANYSIHSYGSGNEIQEVLFLEIWTNGGLTPREALYEASRNLIDLFIPFLHGEEQNIDGM 240
Query: 241 INQHKVTLPLFTFHGRLTKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
N+ + F LT + +++IA ++IFIDQ EL KTYN L+R+NIHTL DLLN
Sbjct: 241 NNKKGSNMLPFPLSHVLTDTGETKEKIAFQHIFIDQLELPSKTYNSLRRANIHTLLDLLN 300
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFAIDLPKN 337
S+EDLM+IE+ + V+ +L +L K FAID P+N
Sbjct: 301 YSREDLMRIEHLEKESVEQVLEVL--RKRFAIDPPRN 335