Jatropha Genome Database

Jcr4S26587.10
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S26587.10 
         (339 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00740.1 | Symbols: RPOA | RNA polymerase subunit alpha | chr...   540   e-154

>ATCG00740.1 | Symbols: RPOA | RNA polymerase subunit alpha |
           chrC:77901-78890 REVERSE LENGTH=329
          Length = 329

 Score =  540 bits (1391), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 259/327 (79%), Positives = 290/327 (88%), Gaps = 2/327 (0%)

Query: 1   MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
           MVREKV +STRTLQWKCVES+ D+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVKVSTRTLQWKCVESKRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 61  CITRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQD 120
           CITRAKSE IPH++S IAGIQES+HEILMNL  +VL+SNLYGT +A I V+GPGY+TA+D
Sbjct: 61  CITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARD 120

Query: 121 IILPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVR 180
           IILPP VEIIDNTQHIA+LTE IDLCI L+IERNRGY +K +NNF+D SYPIDAVFMPV 
Sbjct: 121 IILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVE 180

Query: 181 NANHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
           NANHS+HSYGNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EEE  +LE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLE 240

Query: 241 INQHKVTLPLFTFHGRLTKLRKNQ--KEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDL 298
            NQH+VTLP F FH RL  LRK +  KE+A +YIFIDQ EL P+ YNCLK+SNIHTL DL
Sbjct: 241 NNQHQVTLPFFPFHNRLVNLRKKKKTKELAFQYIFIDQLELPPRIYNCLKKSNIHTLLDL 300

Query: 299 LNKSQEDLMKIENFRIDDVKHILGILE 325
           LN SQEDL+KIE+F ++DVK IL ILE
Sbjct: 301 LNNSQEDLIKIEHFHVEDVKKILDILE 327