Jatropha Genome Database

Jcr4S26587.10
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S26587.10 
         (339 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024860001 assembled CDS                                       116   2e-26

>GSVIVT01024860001 assembled CDS
          Length = 110

 Score =  116 bits (290), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/77 (71%), Positives = 60/77 (77%)

Query: 1  MVREKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
          MVREKV +STRTLQWKCVESR +NKRL YGRFILSP + GQADTIGI MRR L GEIEGT
Sbjct: 1  MVREKVIVSTRTLQWKCVESRVNNKRLCYGRFILSPFIIGQADTIGIVMRRTLFGEIEGT 60

Query: 61 CITRAKSEKIPHEFSTI 77
          CITR     I   ++ I
Sbjct: 61 CITREARSTINLAYAFI 77