Jatropha Genome Database
- Jcr4S26587.10
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Jcr4S26587.10
(339 letters)
Database: Medicago_aa3.5
47,529 sequences; 14,043,872 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g051380.1 30S ribosomal protein S11, chloroplastic (A... 555 e-158
IMGA|Medtr4g034800.1 30S ribosomal protein S11, chloroplastic (A... 485 e-137
IMGA|Medtr1g070860.1 30S ribosomal protein S11, chloroplastic (A... 217 1e-56
IMGA|Medtr4g059920.1 DNA-directed RNA polymerase subunit alpha (... 69 3e-12
>IMGA|Medtr4g051380.1 30S ribosomal protein S11, chloroplastic (AHRD
V1 *-*- B5LMQ6); contains Interpro domain(s) IPR011773
DNA-directed RNA polymerase, alpha subunit
chr04_pseudomolecule_IMGAG_V3.5 15198125-15196604 E
EGN_Mt100125 20100825
Length = 466
Score = 555 bits (1429), Expect = e-158, Method: Compositional matrix adjust.
Identities = 280/331 (84%), Positives = 301/331 (90%), Gaps = 2/331 (0%)
Query: 3 REKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCI 62
R+KV +S RTLQWKCVESR D+KRLYYGRFILSPL KGQADTIGIAMRR LLGEIEGTCI
Sbjct: 136 RQKVKVSARTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTIGIAMRRILLGEIEGTCI 195
Query: 63 TRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQDII 122
TRAKSEKIPHE+STI GIQESIHEILMNLK +VLKSNLYGT DASI KGPGYVTAQDII
Sbjct: 196 TRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLKSNLYGTRDASICFKGPGYVTAQDII 255
Query: 123 LPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVRNA 182
LPP VEI+DNTQHIA+LTE I+LCI LQIER RGYRIK NN QDGSY IDAVFMPVRNA
Sbjct: 256 LPPSVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNA 315
Query: 183 NHSVHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLEIN 242
NHS+HSY NGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEENL+ E N
Sbjct: 316 NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENN 375
Query: 243 QHKVTLPLFTFHGRL--TKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLN 300
QHKVTLPLFTFH RL KLRKN+KEIALK IFIDQ EL+P+ YNCLK+SNIHTL +LLN
Sbjct: 376 QHKVTLPLFTFHDRLLKDKLRKNKKEIALKSIFIDQLELSPRIYNCLKKSNIHTLLELLN 435
Query: 301 KSQEDLMKIENFRIDDVKHILGILEIEKHFA 331
KSQEDLMKIE+FR++DVK+IL IL+IEKHFA
Sbjct: 436 KSQEDLMKIEHFRVEDVKNILNILQIEKHFA 466
>IMGA|Medtr4g034800.1 30S ribosomal protein S11, chloroplastic (AHRD
V1 *-*- P06587); contains Interpro domain(s) IPR011773
DNA-directed RNA polymerase, alpha subunit
chr04_pseudomolecule_IMGAG_V3.5 10870668-10868933 E
EGN_Mt100125 20100825
Length = 430
Score = 485 bits (1248), Expect = e-137, Method: Compositional matrix adjust.
Identities = 246/318 (77%), Positives = 265/318 (83%), Gaps = 27/318 (8%)
Query: 16 KCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEFS 75
KCVESR D+KRLYYGRFILSPL KGQADTIGIAMRR LLGEIEGTCITRAKSEKIPHE+S
Sbjct: 138 KCVESRVDSKRLYYGRFILSPLRKGQADTIGIAMRRILLGEIEGTCITRAKSEKIPHEYS 197
Query: 76 TIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQDIILPPFVEIIDNTQH 135
TI GIQESIHEILMNLK +VLKSNLYGT DASI KGPGYVTAQDIILPP VEI+DNTQH
Sbjct: 198 TIVGIQESIHEILMNLKEIVLKSNLYGTRDASICFKGPGYVTAQDIILPPSVEIVDNTQH 257
Query: 136 IASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVRNANHSVHSYGNGNEK 195
IA+LTE I+LCI LQIER RGYRIK NN QDGSY IDAVFMPVRNANHS+HSY NGNEK
Sbjct: 258 IANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEK 317
Query: 196 QEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLEINQHKVTLPLFTFHG 255
QEILFLEIWTNG +EENL+ E NQHKVTLPLFTFH
Sbjct: 318 QEILFLEIWTNG-------------------------KEENLNFENNQHKVTLPLFTFHD 352
Query: 256 RL--TKLRKNQKEIALKYIFIDQSELTPKTYNCLKRSNIHTLSDLLNKSQEDLMKIENFR 313
RL KLRKN+KEIALK IFIDQ EL+P+ YNCLK+SNIHTL +LLNKSQEDLMKIE+FR
Sbjct: 353 RLLKDKLRKNKKEIALKSIFIDQLELSPRIYNCLKKSNIHTLLELLNKSQEDLMKIEHFR 412
Query: 314 IDDVKHILGILEIEKHFA 331
++DVK+IL IL+IEKHFA
Sbjct: 413 VEDVKNILNILQIEKHFA 430
>IMGA|Medtr1g070860.1 30S ribosomal protein S11, chloroplastic (AHRD
V1 *-*- B5LMQ6); contains Interpro domain(s) IPR001971
Ribosomal protein S11 chr01_pseudomolecule_IMGAG_V3.5
17328324-17326690 E EGN_Mt100125 20100825
Length = 233
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/172 (66%), Positives = 124/172 (72%), Gaps = 19/172 (11%)
Query: 3 REKVTISTRTLQWKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCI 62
R+KV +STRTLQWKCVESR D+K LYYGRFIL+PL K QA IGIAMRR L GEIEGTCI
Sbjct: 71 RQKVKVSTRTLQWKCVESRVDSKCLYYGRFILTPLRKDQAHIIGIAMRRILFGEIEGTCI 130
Query: 63 TRAKSEKIPHEFSTIAGIQESIHEILMNLKNVVLKSNLYGTCDASIYVKGPGYVTAQDII 122
TRAKSEKIPHE+STI GIQESIHEILMNLK +LKSNLYGT DASI KG G
Sbjct: 131 TRAKSEKIPHEYSTILGIQESIHEILMNLKENILKSNLYGTRDASICFKGHGICN----- 185
Query: 123 LPPFVEIIDNTQHIASLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDA 174
+LTE I+LCI LQI+R GY IK NN QDGSY IDA
Sbjct: 186 --------------FNLTEPINLCIELQIDRKHGYHIKTLNNIQDGSYTIDA 223
>IMGA|Medtr4g059920.1 DNA-directed RNA polymerase subunit alpha
(AHRD V1 ***- P13911) chr04_pseudomolecule_IMGAG_V3.5
18411811-18411567 H EGN_Mt100125 20100825
Length = 59
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 40/61 (65%), Gaps = 15/61 (24%)
Query: 138 SLTESIDLCIGLQIERNRGYRIKPTNNFQDGSYPIDAVFMPVRNANHSVHSYGNGNEKQE 197
+LTE I+ CI LQIERN Y IDAV MPVRNANHS+HSY NGNEKQE
Sbjct: 8 NLTEPINFCIELQIERN---------------YTIDAVSMPVRNANHSIHSYVNGNEKQE 52
Query: 198 I 198
I
Sbjct: 53 I 53