Gene/Protein Characteristic Table for KIAA1732
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Product ID ORK06787
Accession No AB051519
Description SET domain containing 2
Clone name bg00050
Vector information
The cDNA fragment was inserted at the XhoI-SacI site of the ...
cDNA sequence DNA sequence (6403 bp)
Predicted protein sequence (1915 aa)
Source Human adult brain
Rouge ID mKIAA1732 by Kazusa Mouse cDNA Project
Note We replaced ph00196, former representative clones for KIAA1732 with bg00050. (2002/5/10)
Features of the cloned cDNA sequence
Description

Length: 6403 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 655 bp
Genome contig ID gi89161205r_46932932
PolyA signal sequence
(AATAAA,-17)
+----*----+----*----+----*----+----
GAACTTTTTATGTAAAAAAATAAAATCAATTAAAG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AACTTGGCATGTGTGTTCCCTAAAAGTTAATCAAGCATATTTGTGTGTAA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 3 r 47032932 47139182 19 99.4 Perfect prediction
Features of the protein sequence
Description

Length: 1915 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
AAI17163 0 100.0 SET domain cont...
Homo sapiens
EAW64810 0 100.0 SET domain cont...
Homo sapiens
NP_054878 0 99.9 SET domain cont...
Homo sapiens
CAC28349 0 99.8 huntingtin inte...
Homo sapiens
Q9BYW2 0 99.8 Histone-lysine ...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB029013 7.2e-16 40.3 KIAA1090
AB002386 5.3e-05 31.6 KIAA0388
AB028999 0.00019 31.0 KIAA1076
AB002337 0.00076 32.8 KIAA0339
AB002302 0.00079 32.9 KIAA0304
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001214 895 1024 PF00856 SET
IPR001202 1742 1771 PF00397 WW/Rsp5/WWP
IPR015119 1810 1906 PF09031 Set2-Rpb1 interacting
HMMSmart IPR006560 845 900 SM00570 AWS
IPR001214 901 1024 SM00317 SET
IPR003616 1025 1041 SM00508 Post-SET zinc-binding region
IPR001202 1741 1773 SM00456 WW/Rsp5/WWP
ProfileScan IPR006560 845 899 PS51215 AWS
IPR001214 900 1022 PS50280 SET
IPR003616 1025 1041 PS50868 Post-SET zinc-binding region
IPR001202 1740 1773 PS50020 WW/Rsp5/WWP
ScanRegExp IPR001202 1746 1771 PS01159 WW/Rsp5/WWP
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f TAGTTGTGAGCTGTTGGCATG
Primer_r ACAGATCATCAGGGTAAAGGG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No.
Experimental conditions
Panel name
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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