hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11111197/chunk_1/iprscan-20080502-11111197.nocrc
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Query sequence: KIAA1732
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF09031.1.fs Set2-Rpb1 interacting                          264.8    2.3e-78   1
PF09031.1.ls Set2-Rpb1 interacting                          266.7    4.3e-77   1
PF00856.18.ls SET domain                                     187.6    2.8e-53   1
PF00856.18.fs SET domain                                     186.1    7.8e-53   1
PF00397.16.fs WW domain                                       50.9    2.8e-13   1
PF00397.16.ls WW domain                                       52.9    9.9e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00856.18.fs   1/1     895  1024 ..     1   259 []   186.1  7.8e-53
PF00856.18.ls   1/1     895  1024 ..     1   259 []   187.6  2.8e-53
PF00397.16.fs   1/1    1742  1771 ..     1    30 []    50.9  2.8e-13
PF00397.16.ls   1/1    1742  1771 ..     1    30 []    52.9  9.9e-13
PF09031.1.fs   1/1    1810  1906 ..     1   100 []   264.8  2.3e-78
PF09031.1.ls   1/1    1810  1906 ..     1   100 []   266.7  4.3e-77

Alignments of top-scoring domains:
PF00856.18.fs: domain 1 of 1, from 895 to 1024: score 186.1, E = 7.8e-53
                   *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae
                      +q+++++++e++ te+kGwGlra++d+p ++f++EY+Ge+++++e++
    KIAA1732   895    FQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFK 941  

                   kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy
                    r +     ++  n++++    Y+f+ ++                     
    KIAA1732   942 ARVK-----EYARNKNIH----YYFMALK--------------------- 961  

                   sPlfWseeellLkGtqlletdkleleeydllaeeievvlqhklFpdveee
                                                                     
    KIAA1732     - -------------------------------------------------- -    

                   fsfedflWaasivsSRafslvegvnresensegslelviDAtrkGNiaRF
                                                     ++ +iDAt kGN++RF
    KIAA1732   962 ----------------------------------NDEIIDATQKGNCSRF 977  

                   iNHSCePNcevqvvfvdgedpgsdedaglepgdprivlfAlrdIpaGeEL
                   +NHSCePNce+q+++v+              g  r+++f+++ +p G EL
    KIAA1732   978 MNHSCEPNCETQKWTVN--------------GQLRVGFFTTKLVPSGSEL 1013 

                   tydYgydksnge<-*
                   t+dY+ + + g+   
    KIAA1732  1014 TFDYQ-FQRYGK    1024 

PF00856.18.ls: domain 1 of 1, from 895 to 1024: score 187.6, E = 2.8e-53
                   *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae
                      +q+++++++e++ te+kGwGlra++d+p ++f++EY+Ge+++++e++
    KIAA1732   895    FQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFK 941  

                   kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy
                    r +     ++  n++++    Y+f+ ++                     
    KIAA1732   942 ARVK-----EYARNKNIH----YYFMALK--------------------- 961  

                   sPlfWseeellLkGtqlletdkleleeydllaeeievvlqhklFpdveee
                                                                     
    KIAA1732     - -------------------------------------------------- -    

                   fsfedflWaasivsSRafslvegvnresensegslelviDAtrkGNiaRF
                                                     ++ +iDAt kGN++RF
    KIAA1732   962 ----------------------------------NDEIIDATQKGNCSRF 977  

                   iNHSCePNcevqvvfvdgedpgsdedaglepgdprivlfAlrdIpaGeEL
                   +NHSCePNce+q+++v+              g  r+++f+++ +p G EL
    KIAA1732   978 MNHSCEPNCETQKWTVN--------------GQLRVGFFTTKLVPSGSEL 1013 

                   tydYgydksnge<-*
                   t+dY+ + + g+   
    KIAA1732  1014 TFDYQ-FQRYGK    1024 

PF00397.16.fs: domain 1 of 1, from 1742 to 1771: score 50.9, E = 2.8e-13
                   *->lppgWeertdpdGrpYYyNhnTktTqWekP<-*
                      lpp+W+ + dp+G++YYy+ +T++TqW++P   
    KIAA1732  1742    LPPNWKTARDPEGKIYYYHVITRQTQWDPP    1771 

PF00397.16.ls: domain 1 of 1, from 1742 to 1771: score 52.9, E = 9.9e-13
                   *->lppgWeertdpdGrpYYyNhnTktTqWekP<-*
                      lpp+W+ + dp+G++YYy+ +T++TqW++P   
    KIAA1732  1742    LPPNWKTARDPEGKIYYYHVITRQTQWDPP    1771 

PF09031.1.fs: domain 1 of 1, from 1810 to 1906: score 264.8, E = 2.3e-78
                   *->eadLsSelAkkakEkFRsyveiSgfIvqcLnPYRKpsCklGRITntE
                      ead+sSelAkk+kE+FR  +e+S+fIvqcLnPYRKp+Ck+GRIT+tE
    KIAA1732  1810    EADTSSELAKKSKEVFR--KEMSQFIVQCLNPYRKPDCKVGRITTTE 1854 

                   DFKhLarKLthgVmnKELKyCenpgedLectEsVkhKskefIkkYmrkhG
                   DFKhLarKLthgVmnKELKyC+np edLec+E+VkhK+ke+IkkYm+k+G
    KIAA1732  1855 DFKHLARKLTHGVMNKELKYCKNP-EDLECNENVKHKTKEYIKKYMQKFG 1903 

                   pVY<-*
                   +VY   
    KIAA1732  1904 AVY    1906 

PF09031.1.ls: domain 1 of 1, from 1810 to 1906: score 266.7, E = 4.3e-77
                   *->eadLsSelAkkakEkFRsyveiSgfIvqcLnPYRKpsCklGRITntE
                      ead+sSelAkk+kE+FR  +e+S+fIvqcLnPYRKp+Ck+GRIT+tE
    KIAA1732  1810    EADTSSELAKKSKEVFR--KEMSQFIVQCLNPYRKPDCKVGRITTTE 1854 

                   DFKhLarKLthgVmnKELKyCenpgedLectEsVkhKskefIkkYmrkhG
                   DFKhLarKLthgVmnKELKyC+np edLec+E+VkhK+ke+IkkYm+k+G
    KIAA1732  1855 DFKHLARKLTHGVMNKELKYCKNP-EDLECNENVKHKTKEYIKKYMQKFG 1903 

                   pVY<-*
                   +VY   
    KIAA1732  1904 AVY    1906 

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