Gene/Protein Characteristic Table for KIAA1076
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Product ID ORK06786
Accession No AB028999
Description SET domain containing 1B
Clone name hj06779
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4833 bp)
Predicted protein sequence (804 aa)
Source Human adult brain
Rouge ID mKIAA1076 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4833 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning Warning
Integrity of 3' end
Length of 3'UTR 2417 bp
Genome contig ID gi89161190f_120641760
PolyA signal sequence
(CATAAA,-26)
+----*----+----*----+----*----+----
AAAGCAAACCATAAATATACTGACTTTTCTTACAG
Flanking genome sequence
(113186 - 113235)
----+----*----+----*----+----*----+----*----+----*
ATACGCCGTCTCTCTTGCTCTCCTCTCTCCCTCTCCTCTTTATTCTTTCT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 12 f 120741760 120754944 7 99.2 Perfect prediction
Features of the protein sequence
Description

Length: 804 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
EAW98290 2.6e-209 100.0 hCG1812756 [Hom...
Homo sapiens
Q9UPS6 3.9e-209 100.0 Histone-lysine ...
Homo sapiens
XP_543382 2e-182 88.7 similar to CG40...
Canis lupus fam...
AAH40775 1.8e-174 85.0 Setd1b protein ...
Mus musculus
AAH41681 1.8e-174 85.0 Setd1b protein ...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB002337 1.4e-25 40.8 KIAA0339
AB002302 8.4e-08 29.3 KIAA0304
AB007927 0.00026 25.8 KIAA0458
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001214 659 788 PF00856 SET
HMMSmart IPR001214 665 788 SM00317 SET
IPR003616 788 804 SM00508 Post-SET zinc-binding region
ProfileScan IPR001214 664 786 PS50280 SET
IPR003616 788 804 PS50868 Post-SET zinc-binding region
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f CCATCGTGCCCAGTGTTAACC
Primer_r AATAGCAGAAACCCCCAACTC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 12
Experimental conditions
Panel name GeneBridge 4
Primer_f CCATCGTGCCCAGTGTTAACC
Primer_r AATAGCAGAAACCCCCAACTC
PCR product length 185 bp
PCR conditions 95 °C15 sec64 °C60 sec30 cycles
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