# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/bg00050.fasta.huge -Q ../query/KIAA1732.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1732, 1915 aa vs ./tmplib.25089 library 1985590 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 10.6057+/-0.0101; mu= -7.5830+/- 0.677 mean_var=388.2890+/-95.018, 0's: 0 Z-trim: 11 B-trim: 154 in 1/39 Lambda= 0.065087 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 42, opt: 30, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1090 ( 715 res) hk03921a ( 715) 706 81.7 7.2e-16 KIAA0388 ( 751 res) hj00039 ( 751) 322 45.6 5.3e-05 KIAA1076 ( 804 res) hj06779 ( 804) 303 43.9 0.00019 KIAA0339 ( 1709 res) hg01304(revised) (1709) 290 43.0 0.00076 KIAA0304 ( 2415 res) af07172 (2415) 293 43.4 0.00079 >>KIAA1090 ( 715 res) hk03921a (715 aa) initn: 703 init1: 604 opt: 706 Z-score: 376.8 bits: 81.7 E(): 7.2e-16 Smith-Waterman score: 706; 40.293% identity (69.231% similar) in 273 aa overlap (844-1108:359-620) 820 830 840 850 860 870 KIAA17 CAKQGKMPCYFDLIEENVYLTERKKNKSHRDIKRM-QCECTPLSKDERAQGEIACGED-- ::... .:.: : ... :: : KIAA10 RETQESERKPPPYKHIKVNKPYGKVQIYTADISEIPKCNCKPTDENP-------CGFDSE 330 340 350 360 370 380 880 890 900 910 920 KIAA17 CLNRLLMIECSSR-CPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLE ::::.::.:: . :: :..:.:. : ..:. ....: :. ::::: : .:. .. :: : KIAA10 CLNRMLMFECHPQVCPAGEFCQNQCFTKRQYPETKIIKTDGKGWGLVAKRDIRKGEFVNE 390 400 410 420 430 440 930 940 950 960 970 980 KIAA17 YCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQ : ::..:..: ::.:. .: :.:.... .:.:::: ::: ::::::::.::::: KIAA10 YVGELIDEEECMARIKHAHENDITHFYMLTIDKDRIIDAGPKGNYSRFMNHSCQPNCETL 450 460 470 480 490 500 990 1000 1010 1020 1030 1040 KIAA17 KWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLGGENRVSIR ::::::. :::.:.. .:.:.::::.:... :.: : ::..:: :.:: . ..: KIAA10 KWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTVCRCGASNCSGFLGDRPKTSTT 510 520 530 540 550 560 1050 1060 1070 1080 1090 1100 KIAA17 AA----GGKMKKERSRKKDSVDGELEALMENGEGLSDKNQVLSLSRLMVRIETLEQKLTC . : : ::. :.. . .:. .. : . .: .:.. .: .. : .:.: KIAA10 LSSEEKGKKTKKKTRRRRAKGEGKRQSEDECFR-CGDGGQLVLCDR---KFCTKAYHLSC 570 580 590 600 610 1110 1120 1130 1140 1150 1160 KIAA17 LELIQNTHSQSCLKSFLERHGLSLLWIWMAELGDGRESNQKLQEEIIKTLEHLPIPTKNM : : KIAA10 LGLGKRPFGKWECPWHHCDVCGKPSTSFCHLCPNSFCKEHQDGTAFSCTPDGRSYCCEHD 620 630 640 650 660 670 >>KIAA0388 ( 751 res) hj00039 (751 aa) initn: 313 init1: 206 opt: 322 Z-score: 181.6 bits: 45.6 E(): 5.3e-05 Smith-Waterman score: 338; 31.551% identity (59.358% similar) in 187 aa overlap (850-1021:552-735) 820 830 840 850 860 870 KIAA17 MPCYFDLIEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQG---EIACG-EDCLNRL :.:.: .. : : . :. ..: : KIAA03 VYNYQPCDHPDRPCDSTCPCIMTQNFCEKFCQCNPDCQN-RFPGCRCKTQCNTKQCPCYL 530 540 550 560 570 580 880 890 900 910 920 KIAA17 LMIECSS----RCPNGDY-------CSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSN . ::. : ... :.: .:: . . . .. ::: ... .: KIAA03 AVRECDPDLCLTCGASEHWDCKVVSCKNCSIQRGLKKHLLLAPSDVAGWGTFIKESVQKN 590 600 610 620 630 640 930 940 950 960 970 980 KIAA17 TFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEP :. :::::.... : : : : .: . ... :.:: ..:::.::: :: ::: .: KIAA03 EFISEYCGELISQDEADRRGKVY--DKYMSSFLFNLNNDFVVDATRKGNKIRFANHSVNP 650 660 670 680 690 990 1000 1010 1020 1030 1040 KIAA17 NCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLGGEN :: .. :::. :.:.:. . . .: :: :::.... KIAA03 NCYAKVVMVNGDHRIGIFAKRAIQAGEELFFDYRYSQADALKYVGIERETDVL 700 710 720 730 740 750 1050 1060 1070 1080 1090 1100 KIAA17 RVSIRAAGGKMKKERSRKKDSVDGELEALMENGEGLSDKNQVLSLSRLMVRIETLEQKLT >>KIAA1076 ( 804 res) hj06779 (804 aa) initn: 294 init1: 245 opt: 303 Z-score: 171.6 bits: 43.9 E(): 0.00019 Smith-Waterman score: 303; 30.952% identity (60.714% similar) in 168 aa overlap (874-1040:640-803) 850 860 870 880 890 900 KIAA17 DIKRMQCECTPLSKDERAQGEIACGEDCLNRLLMIECSSRCPNGDYCSNR-RFQRKQHAD : :. .. : . :. .:..:. KIAA10 DEPPADTQGMSIPAQPHASTRAGSERRSEQRRLLSSFTGSCDSDLLKFNQLKFRKKK--- 610 620 630 640 650 660 910 920 930 940 950 960 KIAA17 VEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKN .. .. . ::: : . . .. .:.:: :. . . : :.: . :.. . . KIAA10 LKFCKSHIHDWGLFAMEPIAADEMVIEYVGQNIRQVIADMREKRYEDEGIGSSYMFRVDH 670 680 690 700 710 720 970 980 990 1000 1010 1020 KIAA17 DEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRY : :::::. :: .::.::::.::: .. ::..: .. ... . . . :.:.::.: KIAA10 DTIIDATKCGNFARFINHSCNPNCYAKVITVESQKKIVIYSKQHINVNEEITYDYKFPIE 730 740 750 760 770 780 1030 1040 1050 1060 1070 1080 KIAA17 GKEAQKCFCGSANCRGYLGGENRVSIRAAGGKMKKERSRKKDSVDGELEALMENGEGLSD . :.::: :::: : KIAA10 DVKIP-CLCGSENCRGTLN 790 800 >>KIAA0339 ( 1709 res) hg01304(revised) (1709 aa) initn: 242 init1: 242 opt: 290 Z-score: 161.0 bits: 43.0 E(): 0.00076 Smith-Waterman score: 290; 32.812% identity (64.062% similar) in 128 aa overlap (913-1040:1582-1708) 890 900 910 920 930 940 KIAA17 RCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKA ::: : . . .. .:.:: :. . . KIAA03 SAIMDSDLLKLNQLKFRKKKLRFGRSRIHEWGLFAMEPIAADEMVIEYVGQNIRQMVADM 1560 1570 1580 1590 1600 1610 950 960 970 980 990 1000 KIAA17 RVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFF : :.:... :.. . .: :::::. :: .::.:: : ::: .. :...: .. .. KIAA03 REKRYVQEGIGSSYLFRVDHDTIIDATKCGNLARFINHCCTPNCYAKVITIESQKKIVIY 1620 1630 1640 1650 1660 1670 1010 1020 1030 1040 1050 1060 KIAA17 TTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLGGENRVSIRAAGGKMKKERSRK . . . :.:.::.: .. :.::. .::: : KIAA03 SKQPIGVDEEITYDYKFPLEDNKIP-CLCGTESCRGSLN 1680 1690 1700 1070 1080 1090 1100 1110 1120 KIAA17 KDSVDGELEALMENGEGLSDKNQVLSLSRLMVRIETLEQKLTCLELIQNTHSQSCLKSFL >>KIAA0304 ( 2415 res) af07172 (2415 aa) initn: 189 init1: 189 opt: 293 Z-score: 160.6 bits: 43.4 E(): 0.00079 Smith-Waterman score: 293; 32.886% identity (63.758% similar) in 149 aa overlap (893-1040:2267-2414) 870 880 890 900 910 920 KIAA17 GEIACGEDCLNRLLMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLP :.... .. : : . .: :: ... KIAA03 GATCDEEEDEVQLRSTRRATSLELPMAMRFRHLKKTSKEAVGVYRSAIHGRGLFCKRNID 2240 2250 2260 2270 2280 2290 930 940 950 960 970 980 KIAA17 SNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSC .. .:.:: : :. : : : .:.: :.. . . ...:::..:: .::.:::: KIAA03 AGEMVIEYSGIVIRSVLTDKREKFYD-GKGIGCYMFRMDDFDVVDATMHGNAARFINHSC 2300 2310 2320 2330 2340 2350 990 1000 1010 1020 1030 1040 KIAA17 EPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQ-RYGKEAQKCFCGSANCRGYLG :::: .. :.:: .. .:. . . : :::.::.: . ... : ::. :: .: KIAA03 EPNCFSRVIHVEGQKHIVIFALRRILRGEELTYDYKFPIEDASNKLPCNCGAKRCRRFLN 2360 2370 2380 2390 2400 2410 1050 1060 1070 1080 1090 1100 KIAA17 GENRVSIRAAGGKMKKERSRKKDSVDGELEALMENGEGLSDKNQVLSLSRLMVRIETLEQ 1915 residues in 1 query sequences 1985590 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:14:44 2008 done: Thu Dec 18 15:14:45 2008 Total Scan time: 0.970 Total Display time: 0.240 Function used was FASTA [version 34.26.5 April 26, 2007]