Gene/Protein Characteristic Table for KIAA0780
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Product ID ORK00635
Accession No AB018323
Description lysine (K)-specific demethylase 4C
Clone name hk05362
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4182 bp)
Predicted protein sequence (1100 aa)
Flexi ORF Clone FXC00635
Source Human adult brain
Rouge ID mKIAA0780 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4182 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 878 bp
Genome contig ID gi89161216f_6648061
PolyA signal sequence
(CATAAA,-34)
+----*----+----*----+----*----+----
ACATAAACTACACTAACAATAGCTGATGAGCTACC
Flanking genome sequence
(512858 - 512907)
----+----*----+----*----+----*----+----*----+----*
TAAAAAAAAAAAAAAAAAAAGCAAAAAAAAACTCATAATGTTTTAAGCAA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 9 f 6748061 7160917 21 99.6 Perfect prediction
Features of the protein sequence
Description

Length: 1100 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAG09844 0 100.0 jmjC domain-con...
synthetic construct
CAH73283 0 99.9 jumonji domain ...
Homo sapiens
EAW58730 0 99.5 jumonji domain ...
Homo sapiens
XP_001144111 0 99.2 jumonji domain ...
Pan troglodytes
AAI04860 0 99.7 Jumonji domain ...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB020683 4.9e-90 54.7 KIAA0876
AB014577 5e-85 55.2 KIAA0677
D87072 1.9e-14 33.2 KIAA0234
D86969 3.5e-12 40.4 KIAA0215
AB033112 8.1e-12 40.5 KIAA1286
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR003349 70 115 PF02375 Transcription factor jumonji
IPR013129 230 346 PF02373 Transcription factor jumonji
HMMSmart IPR003349 68 110 SM00545 Transcription factor jumonji
IPR003347 197 363 SM00558 Transcription factor jumonji/aspartyl beta-hydroxylase
IPR001965 742 800 SM00249 Zinc finger
IPR001965 862 918 SM00249 Zinc finger
IPR002999 930 987 SM00333 Tudor
IPR002999 988 1044 SM00333 Tudor
ProfileScan IPR003349 69 111 PS51183 Transcription factor jumonji
IPR003347 197 363 PS51184 Transcription factor jumonji/aspartyl beta-hydroxylase
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f AGATGAAGAGTTACCCAAGAG
Primer_r AAACATGAGGTGAGGACAAGG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 9
Experimental conditions
Panel name GeneBridge 4
Primer_f AGATGAAGAGTTACCCAAGAG
Primer_r AAGCCCAAGTATGTTTCCTGC
PCR product length 132 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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