hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12505508/chunk_1/iprscan-20080502-12505508.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0780 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00558 220.6 1.4e-61 1 SM00333 88.8 6.3e-22 2 SM00249 62.6 4.9e-14 2 SM00545 61.5 1.1e-13 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00545 1/1 68 110 .. 1 45 [] 61.5 1.1e-13 SM00558 1/1 197 363 .. 1 214 [] 220.6 1.4e-61 SM00249 1/2 742 800 .. 1 39 [] 31.8 9.2e-05 SM00249 2/2 862 918 .. 1 39 [] 30.8 0.00019 SM00333 1/2 930 987 .. 1 60 [] 47.9 1.4e-09 SM00333 2/2 988 1044 .. 1 60 [] 41.0 1.6e-07 Alignments of top-scoring domains: SM00545: domain 1 of 1, from 68 to 110: score 61.5, E = 1.1e-13 *->eiPvfyPteeEFkDplaYIskIrpqgGeAekyGIvKvVPPknWkP<- i++f+P++eEF+ + +Y ++ +++g A+++G +Kv+PPk+WkP KIAA0780 68 KIMTFRPSMEEFREFNKYLAYMESKG--AHRAGLAKVIPPKEWKP 110 * KIAA0780 - - SM00558: domain 1 of 1, from 197 to 363: score 220.6, E = 1.4e-61 *->lylqqlwnlaklPffeytdpkpksgklnllsdlpkerywedilgpdv +++ ++wn+a+l ++l+ +++e + i g+++ KIAA0780 197 DEGVDEWNIARLN--------------TVLDVVEEE-CGISIEGVNT 228 gkPkpkpylymGmaEsrgstTpwHiDdydlySvNylhqgagedGKrWyli pyly+Gm+ ++t+ wH++d+dlyS+Nylh+g++ K Wy+i KIAA0780 229 ------PYLYFGMW---KTTFAWHTEDMDLYSINYLHFGEP---KSWYAI 266 Ppedaeklekllkkhgkefhistapdlfkeqpdllihlstwispevlkkr Ppe+ +le+l++ + +p++++ ++ +l+h++t+isp vlkk KIAA0780 267 PPEHGKRLERLAQGF--------FPSSSQGCDAFLRHKMTLISPSVLKKY 308 lkeeperPlfqgvpvyrfvQkpGefvfiPpGwyHaVfnlGkfniavavNF + +p +++Q++Gef++++p+ yHa+fn+G fn+a++ NF KIAA0780 309 G-----------IPFDKITQEAGEFMITFPYGYHAGFNHG-FNCAESTNF 346 aspewlpmglrlveelr<-* a+ +w+++g+ + + + KIAA0780 347 ATVRWIDYGKVAKLCTC 363 SM00249: domain 1 of 2, from 742 to 800: score 31.8, E = 9.2e-05 *->yC.vCgk.................g.llqCdkgCdrwyHv.Clgppl +C + +++ + ++++ ++++++ l++C +C++ +H +C+g+p KIAA0780 742 MCfIYSEenieysppnafleedgtSlLISCA-KCCVRVHAsCYGIPS 787 eepdg.wyCprCk<-* +e ++w+C rCk KIAA0780 788 HEICDgWLCARCK 800 SM00249: domain 2 of 2, from 862 to 918: score 30.8, E = 0.00019 *->yC.vCgk......g.llqCd.kgCdrwyHv.Clgpple.......ep C +C+ + ++ +g ++qC+ ++C+ ++Hv+C++ ++ ++++ + KIAA0780 862 KCiFCRHrvkrvsGaCIQCSyGRCPASFHVtCAHAAGVlmepddwPY 908 dg.wyCprCk<-* + C r+k KIAA0780 909 VVnITCFRHK 918 SM00333: domain 1 of 2, from 930 to 987: score 47.9, E = 1.4e-09 *->pkfkvGdlvaarwseDgewYrArIikvdsenqlyeVffiDyGneevv + + vG+ v+++++ + ++Y +r+ +v+s+ ++yeV+f+D +++ + KIAA0780 930 KVISVGQTVITKHR-NTRYYSCRVMAVTSQ-TFYEVMFDDGSFSRDT 974 plsdlrqlpekfa<-* ++d+ + ++ ++ KIAA0780 975 FPEDIVSRDCLKL 987 SM00333: domain 2 of 2, from 988 to 1044: score 41.0, E = 1.6e-07 *->pkfkvGdlvaarwseDgewYrArIikvdsenqlyeVffiDyGneevv +++++G++v+++w+ Dg Y A+ + + +y+V f+D G+++ KIAA0780 988 GPPAEGEVVQVKWP-DGKLYGAKYFGSNIA-HMYQVEFED-GSQIAM 1031 plsdlrqlpekfa<-* +++d+++l+e+++ KIAA0780 1032 KREDIYTLDEELP 1044 //