Gene/Protein Characteristic Table for KIAA0566
Order Kazusa clone(s) from : Japan || Other countries
Product ID ORK04208
Accession No AB011138
Description ATPase, class V, type 10A
Clone name hh01910
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5562 bp)
Predicted protein sequence (1163 aa)
Source Human adult brain
Rouge ID mKIAA0566 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 5562 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning Warning
Features of the protein sequence
Description

Length: 1163 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
O60312 0 99.9 Probable phosph...
Homo sapiens
EAW57650 0 99.8 ATPase, Class V...
Homo sapiens
XP_510255 0 99.0 ATPase, Class V...
Pan troglodytes
XP_001161483 0 98.6 ATPase, Class V...
Pan troglodytes
XP_001161625 0 98.1 ATPase, Class V...
Pan troglodytes
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB018258 7.7e-121 50.3 KIAA0715
AB040920 1.2e-110 54.4 KIAA1487
AB075819 2.4e-55 32.1 KIAA1939
AB032963 3.5e-55 32.9 KIAA1137
AB028944 4e-48 35.8 KIAA1021
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR001757 89 103 PR00119 ATPase
IPR001757 693 712 PR00119 ATPase
HMMPfam IPR013200 687 710 PF08282 HAD superfamily hydrolase-like
HMMTigr IPR006539 3 973 TIGR01652 Phospholipid-translocating P-type ATPase
IPR001757 521 570 TIGR01494 ATPase
IPR001757 662 773 TIGR01494 ATPase
ScanRegExp IPR001757 91 97 PS00154 ATPase

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 24 YSFLTMIIVLQVLIPISLYVSIE 46 PRIMARY 23
2 772 FFCGFSASTMIDQWYLIFFNLLF 794 PRIMARY 23
3 836 WFNMADAAFQSLVCFSIPYLAYY 858 SECONDARY 23
4 865 FTWGTPIVTIALLTFLLHLGIET 887 PRIMARY 23
5 895 WITCGFSVLLFFTVALIYNASCA 917 SECONDARY 23
6 930 QALLGDPVFYLTCLMTPVAALLP 952 SECONDARY 23
Expression profile
Description

RT-PCR
Experimental conditions
Primer_f TTTCCATAATACTCCCCATCC
Primer_r CTCTTGGGAAACGGAATGACC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 15
Experimental conditions
Panel name GeneBridge 4
Primer_f TTTCCATAATACTCCCCATCC
Primer_r CTCTTGGGAAACGGAATGACC
PCR product length 124 bp
PCR conditions 95 °C15 sec64 °C60 sec30 cycles
Order Kazusa clone(s) from : Japan || Other countries
Back to the HUGE Protein Database homepage
Send a message to office AT kazusa.or.jp