Gene/Protein Characteristic Table for KIAA1021
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Product ID ORK04210
Accession No AB028944
Description ATPase, class VI, type 11A
Clone name af10412
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (7611 bp)
Predicted protein sequence (1102 aa)
Source Human brain (amygdala)
Rouge ID mKIAA1021 by Kazusa Mouse cDNA Project
Note We replaced fg00592, former representative clones for KIAA1021 with af10412. (2005/08/06)
Features of the cloned cDNA sequence
Description

Length: 7611 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning Warning
Integrity of 3' end
Length of 3'UTR 4301 bp
Genome contig ID gi51511729f_112387506
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
GCCAGCCTTCCGCCACGAGCCAGCTGGGAAGGGCC
Flanking genome sequence
(200916 - 200965)
----+----*----+----*----+----*----+----*----+----*
GCGGCCGCCTAAAGCCCCAGTCAACCCAGCCTGTGTCTGAGCAGACAGGG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 13 f 112487506 112588420 29 99.4 Perfect prediction
Features of the protein sequence
Description

Length: 1102 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
P98196 0 99.9 Probable phosph...
Homo sapiens
ABY40831 0 99.3 ATPase, Class V...
Papio anubis
NP_115565 0 99.9 ATPase, class V...
Homo sapiens
XP_509744 0 99.7 ATPase, Class V...
Pan troglodytes
XP_001101635 0 99.3 similar to ATPa...
Macaca mulatta
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB023173 1.7e-93 57.9 KIAA0956
AB075819 8.6e-79 34.8 KIAA1939
AB032963 5.4e-74 36.2 KIAA1137
AB040920 1.1e-60 38.0 KIAA1487
AB018258 1.6e-58 32.1 KIAA0715
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR001757 380 394 PR00119 ATPase
IPR001757 791 810 PR00119 ATPase
HMMPfam IPR005834 376 814 PF00702 Haloacid dehalogenase-like hydrolase
HMMTigr IPR006539 13 1078 TIGR01652 Phospholipid-translocating P-type ATPase
IPR001757 62 161 TIGR01494 ATPase
IPR001757 622 672 TIGR01494 ATPase
IPR001757 763 871 TIGR01494 ATPase
ScanRegExp IPR001757 382 388 PS00154 ATPase

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 49 FLVQLIIDTPTSPVTSGLPLFFV 71 PRIMARY 23
2 261 MNAFLIVYLCILISKALINTVLK 283 PRIMARY 23
3 315 TDFLAFMVLFNYIIPVSMYVTVE 337 PRIMARY 23
4 852 QYFFYKNVCFIFPQFLYQFFCGF 874 SECONDARY 23
5 884 YLTLYNISFTSLPILLYSLMEQH 906 SECONDARY 23
6 934 IYWTLLGLFDALVFFFGAYFVFE 956 SECONDARY 23
7 971 TFGTLVFTVMVFTVTLKLALDT 992 PRIMARY 22
8 1000 HFVIWGSLLFYVVFSLLWGGVIW 1022 PRIMARY 23
9 1034 FIQMLSSGPAWLAIVLLVTISLL 1056 PRIMARY 23
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f GCATTGGACACACACTACTGG
Primer_r AACACGTAGTACATCCTCTGG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 13
Experimental conditions
Panel name UniGene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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