hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-06395607/chunk_1/iprscan-20080502-06395607.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0566 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00702.16.fs haloacid dehalogenase-like hydrolase 26.7 2.7e-07 3 PF08282.2.fs haloacid dehalogenase-like hydrolase 19.9 4.2e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08282.2.fs 1/1 687 710 .. 217 240 .. 19.9 4.2e-06 Alignments of top-scoring domains: PF08282.2.fs: domain 1 of 1, from 687 to 710: score 19.9, E = 4.2e-06 *->leeviAFGDgeNDieMLelaGlgV<-* +++++A+GDg ND++M+++a+ gV KIAA0566 687 KAMTLAIGDGANDVSMIQVADVGV 710 //