Gene/Protein Characteristic Table for KIAA0474
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Product ID ORK00086
Accession No AB007943
Description RAP1 GTPase activating protein, transcript variant 2
Clone name fj12051
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (3426 bp)
Predicted protein sequence (782 aa)
Flexi ORF Clone FXC00086
Source Human fetal brain
Rouge ID mKIAA0474 by Kazusa Mouse cDNA Project
Note We replaced hh00401 and fj22150, former representative clones for KIAA0474 with fj12051. (2003/8/28,2005/08/06)
Features of the cloned cDNA sequence
Description

Length: 3426 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 1077 bp
Genome contig ID gi89161185r_21695302
PolyA signal sequence
(AATAAA,-25)
+----*----+----*----+----*----+----
AGTTGTATAAAATAAATTCTATTTATCGCTATTGT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ACCCAGAGTTGGGCCTGGCTTTGTGTGAACCGTGGCCAGATTGACCCCAG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 1 r 21795302 21868381 27 100.0 Perfect prediction
Features of the protein sequence
Description

Length: 782 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_001109771 0 93.9 RAP1, GTPase ac...
Macaca mulatta
XP_233609 0 93.6 similar to Rap1...
Rattus norvegicus
BAG10342 0 100.0 Rap1 GTPase-act...
synthetic construct
EAW94979 0 98.8 RAP1, GTPase ac...
Homo sapiens
CAH91457 0 93.4 hypothetical pr...
Pongo abelii
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB028962 1.9e-49 54.9 KIAA1039
AB007900 2.1e-25 39.8 KIAA0440
AB037810 3.9e-25 36.8 KIAA1389
AB011117 5.6e-25 37.4 KIAA0545
AB033098 6.3e-08 28.5 KIAA1272
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR003109 96 118 PF02188 GoLoco
IPR000331 311 498 PF02145 Rap/ran-GAP
HMMSmart IPR003109 96 118 SM00390 GoLoco
ProfileScan IPR003109 96 118 PS50877 GoLoco
IPR000331 282 498 PS50085 Rap/ran-GAP
Experimental conditions
Primer_f
Primer_r
PCR conditions °C sec °C sec cycles

RH mapping information
Description

Chromosome No.
Experimental conditions
Panel name
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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