hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04044428/chunk_1/iprscan-20080502-04044428.nocrc
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Query sequence: KIAA0474
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02145.6.fs Rap/ran-GAP                                    424.3     3e-128   1
PF02145.6.ls Rap/ran-GAP                                    426.2   4.3e-125   1
PF02188.7.fs GoLoco motif                                    33.6    1.4e-09   1
PF02188.7.ls GoLoco motif                                    35.7    1.5e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02188.7.ls   1/1      96   118 ..     1    23 []    35.7  1.5e-07
PF02188.7.fs   1/1      98   118 ..     3    23 .]    33.6  1.4e-09
PF02145.6.fs   1/1     311   498 ..     1   192 []   424.3   3e-128
PF02145.6.ls   1/1     311   498 ..     1   192 []   426.2 4.3e-125

Alignments of top-scoring domains:
PF02188.7.ls: domain 1 of 1, from 96 to 118: score 35.7, E = 1.5e-07
                   *->dEelfdLLlrvQssRmDDQRael<-*
                        +lf+++ ++Q+sRmD+QR+ +   
    KIAA0474    96    NTDLFEMIEKMQGSRMDEQRCSF    118  

PF02188.7.fs: domain 1 of 1, from 98 to 118: score 33.6, E = 1.4e-09
                   *->elfdLLlrvQssRmDDQRael<-*
                      +lf+++ ++Q+sRmD+QR+ +   
    KIAA0474    98    DLFEMIEKMQGSRMDEQRCSF    118  

PF02145.6.fs: domain 1 of 1, from 311 to 498: score 424.3, E = 3e-128
                   *->lysNeeaspaFdeFLtlLGqrvrLKdfepDkvYrGGLDvkgddTGth
                      l+s++e+spaF+eFL++LGq+v+L+df++   +rGGLDv++++TGt+
    KIAA0474   311    LFSTNEESPAFVEFLEFLGQKVKLQDFKG---FRGGLDVTHGQTGTE 354  

                   svYttykdmeimFHVSTlLPytesdkqqLqrKRHIGNDiVtIVFqesGek
                   svY++++++eimFHVST+LPyte+d+qqLqrKRHIGNDiV++VFq++++ 
    KIAA0474   355 SVYCNFRNKEIMFHVSTKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENT- 403  

                   pFspdtIrShFqhVfviVraldpetehvtYkVsvtrrkDvpafgptlpkg
                   pF+pd+I+S+F+h++v+V+a+++++++++YkVsvt+r+Dvp+fgp+lp++
    KIAA0474   404 PFVPDMIASNFLHAYVVVQAEGGGPDGPLYKVSVTARDDVPFFGPPLPDP 453  

                   avfdknaeFreflLakliNaenavhkarkFaklatrtRqklLadL<-*
                   avf+k++eF+eflL+kliNae+a++ka+kFakl++rtR++lL++L   
    KIAA0474   454 AVFRKGPEFQEFLLTKLINAEYACYKAEKFAKLEERTRAALLETL    498  

PF02145.6.ls: domain 1 of 1, from 311 to 498: score 426.2, E = 4.3e-125
                   *->lysNeeaspaFdeFLtlLGqrvrLKdfepDkvYrGGLDvkgddTGth
                      l+s++e+spaF+eFL++LGq+v+L+df++   +rGGLDv++++TGt+
    KIAA0474   311    LFSTNEESPAFVEFLEFLGQKVKLQDFKG---FRGGLDVTHGQTGTE 354  

                   svYttykdmeimFHVSTlLPytesdkqqLqrKRHIGNDiVtIVFqesGek
                   svY++++++eimFHVST+LPyte+d+qqLqrKRHIGNDiV++VFq++++ 
    KIAA0474   355 SVYCNFRNKEIMFHVSTKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENT- 403  

                   pFspdtIrShFqhVfviVraldpetehvtYkVsvtrrkDvpafgptlpkg
                   pF+pd+I+S+F+h++v+V+a+++++++++YkVsvt+r+Dvp+fgp+lp++
    KIAA0474   404 PFVPDMIASNFLHAYVVVQAEGGGPDGPLYKVSVTARDDVPFFGPPLPDP 453  

                   avfdknaeFreflLakliNaenavhkarkFaklatrtRqklLadL<-*
                   avf+k++eF+eflL+kliNae+a++ka+kFakl++rtR++lL++L   
    KIAA0474   454 AVFRKGPEFQEFLLTKLINAEYACYKAEKFAKLEERTRAALLETL    498  

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