Miyakogusa Predicted Gene
- chr1.CM0033.700.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr1.CM0033.700.nc - phase: 0
(870 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC004544A_C02 KMC004544A_c02 1711 0.0
KMC000762A_C01 KMC000762A_c01 174 9e-44
KMC003103A_C01 KMC003103A_c01 159 6e-39
KMC001488A_C07 KMC001488A_c07 137 2e-32
KMC002986A_C01 KMC002986A_c01 113 3e-25
KMC000025A_C97 KMC000025A_c97 113 3e-25
KMC005244A_C01 KMC005244A_c01 86 7e-17
KMC005349A_C01 KMC005349A_c01 60 4e-09
KMC005604A_C01 KMC005604A_c01 52 9e-07
>KMC004544A_C02 KMC004544A_c02
Length = 1162
Score = 1711 bits (863), Expect = 0.0
Identities = 870/871 (99%), Gaps = 1/871 (0%)
Strand = Plus / Minus
Query: 1 atggcgaaagacatcgaaaccgaagcaccgcgaggtgatcagttggcacacaaggactac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1120 atggcgaaagacatcgaaaccgaagcaccgcgaggtgatcagttggcacacaaggactac 1061
Query: 61 catgacccaccaccagcaccgctcttcgacaccaccgagctcaccaagtggtccttctac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 catgacccaccaccagcaccgctcttcgacaccaccgagctcaccaagtggtccttctac 1001
Query: 121 agagccctcatcgccgagttcgtcgccaccctgctcttcctctacatcaccgtcctcacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 agagccctcatcgccgagttcgtcgccaccctgctcttcctctacatcaccgtcctcacc 941
Query: 181 gtcatcggctacagcagccaaaccgaccccgctaacaccaccgacccttgcggcggcgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 gtcatcggctacagcagccaaaccgaccccgctaacaccaccgacccttgcggcggcgtt 881
Query: 241 ggcatcctcggcatcgcttgggccttcggcggcatgattttcatcctcgtttactgcacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 ggcatcctcggcatcgcttgggccttcggcggcatgattttcatcctcgtttactgcacc 821
Query: 301 gccggcatctcagggggtcacataaacccggcggtgacgttcggtttgttcctggcgagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 gccggcatctcagggggtcacataaacccggcggtgacgttcggtttgttcctggcgagg 761
Query: 361 aaggtttcactggtcagagctttgttctacatggtggctcagtgtttgggagccataagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 aaggtttcactggtcagagctttgttctacatggtggctcagtgtttgggagccataagc 701
Query: 421 ggtgttgggttggtgaaggcttttcagaaaagctactacaacaggtaccatggcggtgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ggtgttgggttggtgaaggcttttcagaaaagctactacaacaggtaccatggcggtgca 641
Query: 481 aacatgcttgctgatggctactccaagggaactggtttgggcgctgagattatcggcacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 aacatgcttgctgatggctactccaagggaactggtttgggcgctgagattatcggcacc 581
Query: 541 tttgtccttgtctacaccgtcttctccgccaccgatcccaagagaaacgccagagattcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tttgtccttgtctacaccgtcttctccgccaccgatcccaagagaaacgccagagattcc 521
Query: 601 catgttcctgttttggcacctcttccaattgggtttgcagtgttcatggttcacttggcc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 catgttcctgttttggcacctcttccaattgggtttgcagtgttcatggttcacttggcc 461
Query: 661 accatccccatcactggaaccggaatcaaccctgctagaagcttcggagctgctgtcata 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 accatccccatcactggaaccggaatcaaccctgctagaagcttcggagctgctgtcata 401
Query: 721 tacaacaacgagaaggcatgggatgaccagtggatcttctgggtgggacctttcattggt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tacaacaacgagaaggcatgggatgaccagtggatcttctgggtgggacctttcattggt 341
Query: 781 gctactattgctgcaatctaccaccagtacgtgttgagagctcaagcggcgaaggctcta 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gctactattgctgcaatctaccaccagtacgtgttgagagctcaagcggcgaaggctcta 281
Query: 841 ggttcttttaggagctccgg-ccacctgtaa 870
|||||||||||||||||||| ||||||||||
Sbjct: 280 ggttcttttaggagctccggcccacctgtaa 250
>KMC000762A_C01 KMC000762A_c01
Length = 1026
Score = 174 bits (88), Expect = 9e-44
Identities = 226/272 (83%)
Strand = Plus / Minus
Query: 523 gctgagattatcggcacctttgtccttgtctacaccgtcttctccgccaccgatcccaag 582
||||||||| |||| |||||||| ||||||||||| |||||||| ||||| ||| |||||
Sbjct: 946 gctgagattgtcggtacctttgttcttgtctacactgtcttctctgccactgatgccaag 887
Query: 583 agaaacgccagagattcccatgttcctgttttggcacctcttccaattgggtttgcagtg 642
||||| |||||||| || |||||||| ||||||| || ||||| ||||| ||||| |||
Sbjct: 886 agaaatgccagagactctcatgttccgcttttggccccccttcccattggatttgctgtg 827
Query: 643 ttcatggttcacttggccaccatccccatcactggaaccggaatcaaccctgctagaagc 702
||| |||| |||||||| ||||| |||||||| ||||| || || ||||| ||||| ||
Sbjct: 826 ttcttggtccacttggctaccattcccatcacaggaactggcattaacccagctaggagt 767
Query: 703 ttcggagctgctgtcatatacaacaacgagaaggcatgggatgaccagtggatcttctgg 762
| || ||||| | |||||||||| || | || ||||||||||| ||||| ||||||
Sbjct: 766 cttggtgctgccattatatacaacagagaccatgcttgggatgaccattggattttctgg 707
Query: 763 gtgggacctttcattggtgctactattgctgc 794
|| |||||||||||||| ||| || |||||||
Sbjct: 706 gttggacctttcattggagctgctcttgctgc 675
>KMC003103A_C01 KMC003103A_c01
Length = 611
Score = 159 bits (80), Expect = 6e-39
Identities = 206/248 (83%)
Strand = Plus / Minus
Query: 574 gatcccaagagaaacgccagagattcccatgttcctgttttggcacctcttccaattggg 633
|||||||| |||| ||||||||||||||||| || |||||||| || ||||| |||||
Sbjct: 607 gatcccaaaagaagtgccagagattcccatgtgccggttttggctccacttcccattgga 548
Query: 634 tttgcagtgttcatggttcacttggccaccatccccatcactggaaccggaatcaaccct 693
||||| ||||||||||||||||||||||||||||| ||||||| || || || ||||||
Sbjct: 547 tttgctgtgttcatggttcacttggccaccatcccagtcactggtactggcattaaccct 488
Query: 694 gctagaagcttcggagctgctgtcatatacaacaacgagaaggcatgggatgaccagtgg 753
||||| || || ||||||||||| || | |||| | || | ||||||||||| |||
Sbjct: 487 gctaggagttttggagctgctgttatcttcaaccaatctaaaccctgggatgaccattgg 428
Query: 754 atcttctgggtgggacctttcattggtgctactattgctgcaatctaccaccagtacgtg 813
||||||||||| ||||| |||||||| || | ||||| ||| |||||||||||| | |
Sbjct: 427 atcttctgggtaggaccattcattggggcagccattgcagcattctaccaccagttcatc 368
Query: 814 ttgagagc 821
||||||||
Sbjct: 367 ttgagagc 360
>KMC001488A_C07 KMC001488A_c07
Length = 1411
Score = 137 bits (69), Expect = 2e-32
Identities = 132/153 (86%)
Strand = Plus / Minus
Query: 516 tttgggcgctgagattatcggcacctttgtccttgtctacaccgtcttctccgccaccga 575
|||||| |||||||| || || |||||||| ||||||||||| || ||||| || || ||
Sbjct: 843 tttgggtgctgagatcataggaacctttgttcttgtctacactgttttctctgctactga 784
Query: 576 tcccaagagaaacgccagagattcccatgttcctgttttggcacctcttccaattgggtt 635
||| ||||| ||||| || ||||||||||||||||| ||||||| ||||||||||| ||
Sbjct: 783 tcctaagaggaacgctagggattcccatgttcctgtactggcaccacttccaattggatt 724
Query: 636 tgcagtgttcatggttcacttggccaccatccc 668
||| |||||||||||||||||||| || |||||
Sbjct: 723 tgctgtgttcatggttcacttggctacaatccc 691
Score = 58.0 bits (29), Expect = 2e-08
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 97 gagctcaccaagtggtccttctacagagccctcatcgccgagttcgtcgccaccctgctc 156
|||||||| |||||||| | |||||||| |||| || |||||||| || ||||| |||
Sbjct: 1270 gagctcacaaagtggtctctgtacagagctgtcatagcagagttcgtagcaacccttctc 1211
Query: 157 ttcctctacatcaccgt 173
||||| |||||||||||
Sbjct: 1210 ttcctttacatcaccgt 1194
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 788 ttgctgcaatctaccaccagtac 810
|||||||||||||||||||||||
Sbjct: 570 ttgctgcaatctaccaccagtac 548
Score = 42.1 bits (21), Expect = 9e-04
Identities = 40/45 (88%), Gaps = 1/45 (2%)
Strand = Plus / Minus
Query: 271 ggcatgattttcatcctcgtttactgcacc-gccggcatctcagg 314
|||||||| ||| |||| |||||||||||| ||||| ||||||||
Sbjct: 1092 ggcatgatcttcgtccttgtttactgcaccggccggtatctcagg 1048
>KMC002986A_C01 KMC002986A_c01
Length = 989
Score = 113 bits (57), Expect = 3e-25
Identities = 75/81 (92%)
Strand = Plus / Minus
Query: 109 tggtccttctacagagccctcatcgccgagttcgtcgccaccctgctcttcctctacatc 168
||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||| ||
Sbjct: 899 tggtccttctacagagccctcattgccgagttcatcgccaccctcctcttcctctacgtc 840
Query: 169 accgtcctcaccgtcatcggc 189
|||||| |||||||||||||
Sbjct: 839 accgtcgccaccgtcatcggc 819
Score = 103 bits (52), Expect = 3e-22
Identities = 160/196 (81%)
Strand = Plus / Minus
Query: 245 tcctcggcatcgcttgggccttcggcggcatgattttcatcctcgtttactgcaccgccg 304
|||||||||| || ||| |||||||||||||||| ||| ||||||| |||||||||||||
Sbjct: 781 tcctcggcattgcctggtccttcggcggcatgatcttcgtcctcgtctactgcaccgccg 722
Query: 305 gcatctcagggggtcacataaacccggcggtgacgttcggtttgttcctggcgaggaagg 364
||||||| || || ||||| ||||| || || || ||||| | ||||| || | ||||
Sbjct: 721 gcatctccggcggccacatcaaccccgccgtcaccttcggcctcttcctcgctcgcaagg 662
Query: 365 tttcactggtcagagctttgttctacatggtggctcagtgtttgggagccataagcggtg 424
| || || | ||||| | || |||||||| |||||||| ||||| || || ||||||
Sbjct: 661 tgtctctcattcgagctgtcttgtacatggtagctcagtgcttgggtgctatctgcggtg 602
Query: 425 ttgggttggtgaaggc 440
||||||||||||||||
Sbjct: 601 ttgggttggtgaaggc 586
Score = 54.0 bits (27), Expect = 2e-07
Identities = 154/195 (78%), Gaps = 1/195 (0%)
Strand = Plus / Minus
Query: 523 gctgagattatcggcacctttgtccttgtctacaccgtcttctccgccaccgatcccaag 582
||||||||||||||||| ||||| ||||| ||||| || ||||| || || || || |||
Sbjct: 503 gctgagattatcggcacgtttgtgcttgtgtacactgtgttctctgcgactgacccgaag 444
Query: 583 agaaacgccagagattcccatgttcctgttttggcacctcttccaattgggtttgcagtg 642
|||| ||| | || || || || || || ||||||| | || ||||| || || ||
Sbjct: 443 agaagcgcgcgtgactctcacgtgcccgtactggcaccgttgcctattggtttcgctgtt 384
Query: 643 ttcatggttcacttggccaccatccccatcactggaaccggaatcaa-ccctgctagaag 701
|||||||||||| ||||| |||| ||| ||||||| ||||| | || |||||| || ||
Sbjct: 383 ttcatggttcacctggcccccatacccctcactggtaccggccttaagccctgccaggag 324
Query: 702 cttcggagctgctgt 716
|||||| ||||||||
Sbjct: 323 cttcggtgctgctgt 309
>KMC000025A_C97 KMC000025A_c97
Length = 2420
Score = 113 bits (57), Expect = 3e-25
Identities = 126/149 (84%)
Strand = Plus / Minus
Query: 523 gctgagattatcggcacctttgtccttgtctacaccgtcttctccgccaccgatcccaag 582
||||||||| | ||||||||||| ||||| |||||||||||||||||||||||| | |||
Sbjct: 816 gctgagattgttggcacctttgttcttgtttacaccgtcttctccgccaccgatgctaag 757
Query: 583 agaaacgccagagattcccatgttcctgttttggcacctcttccaattgggtttgcagtg 642
| | ||||||||| || || || || ||||||||||||| || |||||||| || |||
Sbjct: 756 cgtagcgccagagactctcacgtccccattttggcacctctgcctattgggttcgctgtg 697
Query: 643 ttcatggttcacttggccaccatccccat 671
||| |||| || ||||| |||||||||||
Sbjct: 696 ttcttggtgcatttggctaccatccccat 668
Score = 95.6 bits (48), Expect = 7e-20
Identities = 93/108 (86%)
Strand = Plus / Minus
Query: 256 gcttgggccttcggcggcatgattttcatcctcgtttactgcaccgccggcatctcaggg 315
|||||||| ||||| |||||||| ||| |||||||||||||||||||| ||||||||
Sbjct: 1086 gcttgggctttcggtggcatgatcttcgctctcgtttactgcaccgccggaatctcagga 1027
Query: 316 ggtcacataaacccggcggtgacgttcggtttgttcctggcgaggaag 363
||||||||||||||||| ||||| || || |||| |||||||||||
Sbjct: 1026 ggtcacataaacccggctgtgacttttgggctgtttttggcgaggaag 979
Score = 65.9 bits (33), Expect = 6e-11
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 109 tggtccttctacagagccctcatcgccgagttcgtcgccaccctgctcttcctctacatc 168
|||||||||||||||||| || |||||||| || |||||| | || ||||||||||||
Sbjct: 1215 tggtccttctacagagccggtattgccgagtttgttgccacctttctgttcctctacatc 1156
Query: 169 accgtcctcaccgtcat 185
|||||| | ||||||||
Sbjct: 1155 accgtcttgaccgtcat 1139
Score = 52.0 bits (26), Expect = 9e-07
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 739 tgggatgaccagtggatcttctgggtgggacctttcat 776
|||||||| || |||||||||||||||||||| |||||
Sbjct: 597 tgggatgatcactggatcttctgggtgggaccattcat 560
>KMC005244A_C01 KMC005244A_c01
Length = 504
Score = 85.7 bits (43), Expect = 7e-17
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 256 gcttgggccttcggcggcatgattttcatcctcgtttactgcaccgccggcatctcaggg 315
||||||||||| || |||||||| |||||||| ||||||||||||||||| ||||| ||
Sbjct: 278 gcttgggcctttggtggcatgatcttcatccttgtttactgcaccgccggtatctctgga 337
Query: 316 ggtcacataaacccggcggtgac 338
|| ||||||||||| || |||||
Sbjct: 338 ggacacataaaccctgcagtgac 360
Score = 56.0 bits (28), Expect = 6e-08
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 106 aagtggtccttctacagagccctcatcgccgagttcgtcgccaccctgctcttcct 161
|||||||||||||||||||| ||||| || |||||| | ||||| || ||||||||
Sbjct: 140 aagtggtccttctacagagctctcatagctgagttcatagccacacttctcttcct 195
>KMC005349A_C01 KMC005349A_c01
Length = 596
Score = 60.0 bits (30), Expect = 4e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 388 tacatggtggctcagtgtttgggagccataagcggtgttgggttggtgaaggcttttcag 447
||||||||||||||||| |||||||| || | || ||||||||||| |||||||| |||
Sbjct: 481 tacatggtggctcagtgcttgggagctatttgtggagttgggttggttaaggctttccag 540
Query: 448 aa 449
||
Sbjct: 541 aa 542
Score = 50.1 bits (25), Expect = 4e-06
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 97 gagctcaccaagtggtccttctacagagccctcatcgccgagttcgtcgccaccctgctc 156
|||||||| ||||||||||||||||| || |||| || |||||| | ||||| ||||
Sbjct: 178 gagctcacaaagtggtccttctacagggcagtcattgctgagttcattgccactttgctt 237
Query: 157 ttcctctacatcaccgtcctcaccgtcatcggctaca 193
||||| ||||| || || ||||| || || |||||||
Sbjct: 238 ttcctttacattactgtgctcactgtgattggctaca 274
>KMC005604A_C01 KMC005604A_c01
Length = 591
Score = 52.0 bits (26), Expect = 9e-07
Identities = 101/126 (80%)
Strand = Plus / Plus
Query: 238 gttggcatcctcggcatcgcttgggccttcggcggcatgattttcatcctcgtttactgc 297
|||||||||| || || |||||||| || || |||||||| || ||| || ||||||
Sbjct: 340 gttggcatccaaggtattgcttgggcttttggtggcatgatctttgcccttgtctactgc 399
Query: 298 accgccggcatctcagggggtcacataaacccggcggtgacgttcggtttgttcctggcg 357
|| || || || ||||| || ||||| || ||||| |||||||||||| |||| |||||
Sbjct: 400 acagctggaatatcaggtgggcacattaatccggctgtgacgttcggtctgtttttggcg 459
Query: 358 aggaag 363
||||||
Sbjct: 460 aggaag 465
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2067
Number of Sequences: 8469
Number of extensions: 2067
Number of successful extensions: 558
Number of sequences better than 1.0e-03: 9
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 527
Number of HSP's gapped (non-prelim): 31
length of query: 870
length of database: 5,164,774
effective HSP length: 16
effective length of query: 854
effective length of database: 5,029,270
effective search space: 4294996580
effective search space used: 4294996580
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)