Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005604A_C01 KMC005604A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF71819.1|AF141899_1 putative aquaporin PIP1-3 [Vitis berlan... 290 9e-78
gb|AAF80557.1|AF188844_1 plasma membrane aquaporin [Vitis vinifera] 286 1e-76
dbj|BAA32777.1| plasma membrane aquaporin (PAQ1) [Raphanus sativus] 285 4e-76
gb|AAL32688.1| plasma membrane intrinsic protein 1C (transmembra... 284 5e-76
ref|NP_171668.1| plasma membrane intrinsic protein 1c, putative;... 284 5e-76
>gb|AAF71819.1|AF141899_1 putative aquaporin PIP1-3 [Vitis berlandieri x Vitis rupestris]
Length = 287
Score = 290 bits (742), Expect = 9e-78
Identities = 139/163 (85%), Positives = 150/163 (91%)
Frame = +1
Query: 103 EDVKVGANKFSERHALGTEAQGDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFL 282
EDVK+GANKF+ER LGT AQ DKDYKEPPPAPLFEPGELKSWSFYRAGIAEF+ATFLFL
Sbjct: 6 EDVKLGANKFTERQPLGTAAQTDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFL 65
Query: 283 YITVLTVMGVNRSPNKCSSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLAR 462
YIT+LTVMGV +S C+SVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGL LAR
Sbjct: 66 YITILTVMGVKKSSTMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLAR 125
Query: 463 KLSLTRALFYIVMQCLGAICGAGVVKGFEGNARFEMFKGGANV 591
KLSLTRA+FYI+MQCLGAICGAGVVKGFEG+ +E+ GGANV
Sbjct: 126 KLSLTRAIFYIIMQCLGAICGAGVVKGFEGSQSYEVLGGGANV 168
>gb|AAF80557.1|AF188844_1 plasma membrane aquaporin [Vitis vinifera]
Length = 287
Score = 286 bits (733), Expect = 1e-76
Identities = 137/163 (84%), Positives = 149/163 (91%)
Frame = +1
Query: 103 EDVKVGANKFSERHALGTEAQGDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFL 282
EDVK+GA KF+ER LGT AQ DKDYK+ PPAPLFEPGELKSWSFYRAGIAEF+ATFLFL
Sbjct: 6 EDVKLGATKFTERQPLGTAAQSDKDYKDLPPAPLFEPGELKSWSFYRAGIAEFMATFLFL 65
Query: 283 YITVLTVMGVNRSPNKCSSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLAR 462
YIT+LTVMGV +SP C+SVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGL LAR
Sbjct: 66 YITILTVMGVKKSPTMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLAR 125
Query: 463 KLSLTRALFYIVMQCLGAICGAGVVKGFEGNARFEMFKGGANV 591
KLSLTRA+FYI+MQCLGAICGAGVVKGFEG+ +E+ GGANV
Sbjct: 126 KLSLTRAIFYIIMQCLGAICGAGVVKGFEGSQSYEVLGGGANV 168
>dbj|BAA32777.1| plasma membrane aquaporin (PAQ1) [Raphanus sativus]
Length = 286
Score = 285 bits (728), Expect = 4e-76
Identities = 138/162 (85%), Positives = 148/162 (91%)
Frame = +1
Query: 103 EDVKVGANKFSERHALGTEAQGDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFL 282
EDV+VGANKF ER +GT AQ DKDY EPPPAPLFEPGEL SWSF+RAGIAEF+ATFLFL
Sbjct: 6 EDVRVGANKFPERQPIGTSAQSDKDYNEPPPAPLFEPGELSSWSFWRAGIAEFIATFLFL 65
Query: 283 YITVLTVMGVNRSPNKCSSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLAR 462
YITVLTVMGV RSPN C+SVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLAR
Sbjct: 66 YITVLTVMGVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLAR 125
Query: 463 KLSLTRALFYIVMQCLGAICGAGVVKGFEGNARFEMFKGGAN 588
KLSLTRAL+YIVMQCLGAICGAGVVKGF+ N +++ GGAN
Sbjct: 126 KLSLTRALYYIVMQCLGAICGAGVVKGFQPN-QYQALGGGAN 166
>gb|AAL32688.1| plasma membrane intrinsic protein 1C (transmembrane protein B)
[Arabidopsis thaliana] gi|25083740|gb|AAN72112.1| plasma
membrane intrinsic protein 1C (transmembrane protein B)
[Arabidopsis thaliana]
Length = 286
Score = 284 bits (727), Expect = 5e-76
Identities = 138/162 (85%), Positives = 147/162 (90%)
Frame = +1
Query: 103 EDVKVGANKFSERHALGTEAQGDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFL 282
EDV+VGANKF ER +GT AQ DKDYKEPPPAP FEPGEL SWSFYRAGIAEF+ATFLFL
Sbjct: 6 EDVRVGANKFPERQPIGTSAQTDKDYKEPPPAPFFEPGELSSWSFYRAGIAEFIATFLFL 65
Query: 283 YITVLTVMGVNRSPNKCSSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLAR 462
YITVLTVMGV R+PN C+SVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLAR
Sbjct: 66 YITVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLAR 125
Query: 463 KLSLTRALFYIVMQCLGAICGAGVVKGFEGNARFEMFKGGAN 588
KLSLTRA+FYIVMQCLGAICGAGVVKGF+ N ++ GGAN
Sbjct: 126 KLSLTRAVFYIVMQCLGAICGAGVVKGFQPNP-YQTLGGGAN 166
>ref|NP_171668.1| plasma membrane intrinsic protein 1c, putative; protein id:
At1g01620.1, supported by cDNA: gi_13194765, supported
by cDNA: gi_17065067 [Arabidopsis thaliana]
gi|1175012|sp|Q08733|WC1C_ARATH Plasma membrane
intrinsic protein 1C (Transmembrane protein B) (TMP-B)
gi|25295700|pir||A86147 hypothetical protein F22L4.16 -
Arabidopsis thaliana gi|396218|emb|CAA49155.1|
transmembrane protein TMP-B [Arabidopsis thaliana]
gi|8920598|gb|AAF81320.1|AC061957_16 Identical to a
plasma membrane intrinsic protein 1C (transmembrane
protein B) from Arabidopsis thaliana gi|1175012 and
contains a major intrinsic protein PF|00230 domain.
ESTs gb|AI993641, gb|AA597672, gb|H36675, gb|N65332,
gb|N96473, gb|T43232, gb|H37074, gb|H36992, gb|N65343,
gb|T44267, gb|T45734, gb|N97036, gb|H36897, gb|Z17730,
gb|T22715, gb|T13917, gb|T14921 come from this gene
gi|13194766|gb|AAK15545.1|AF348574_1 putative plasma
membrane intrinsic protein 1c [Arabidopsis thaliana]
Length = 286
Score = 284 bits (727), Expect = 5e-76
Identities = 138/162 (85%), Positives = 147/162 (90%)
Frame = +1
Query: 103 EDVKVGANKFSERHALGTEAQGDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFL 282
EDV+VGANKF ER +GT AQ DKDYKEPPPAP FEPGEL SWSFYRAGIAEF+ATFLFL
Sbjct: 6 EDVRVGANKFPERQPIGTSAQTDKDYKEPPPAPFFEPGELSSWSFYRAGIAEFIATFLFL 65
Query: 283 YITVLTVMGVNRSPNKCSSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLAR 462
YITVLTVMGV R+PN C+SVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLAR
Sbjct: 66 YITVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLAR 125
Query: 463 KLSLTRALFYIVMQCLGAICGAGVVKGFEGNARFEMFKGGAN 588
KLSLTRA+FYIVMQCLGAICGAGVVKGF+ N ++ GGAN
Sbjct: 126 KLSLTRAVFYIVMQCLGAICGAGVVKGFQPNP-YQTLGGGAN 166
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 536,153,203
Number of Sequences: 1393205
Number of extensions: 12069688
Number of successful extensions: 35027
Number of sequences better than 10.0: 783
Number of HSP's better than 10.0 without gapping: 33004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34738
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
