PAX4 ORF clone FXC11401

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KOP Flexi HaloTag ORF List search

Flexi ORF Clone FXC11401

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Clone info.

Species

human

Clone Name

pF1KE0924 Sequence (with vector) Restriction Map

Product ID

FXC11401

HaloTag Clone PID

FHC11401

ORF Sequence

DNA sequence (1029 bp)
Protein sequence (343 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB528989]

Gene

KIEE0924

Symbol

PAX4

Alias : KPD, MODY9

Description

paired box 4

Original Clone ID

cp01424

Features of the cloned ORF sequence

Description

Length: 1029 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 343 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS5797.1 1.9e-95 99.7 PAX4 CCDS31451.1 3.7e-21 42.1 PAX6 CCDS65043.1 2.4e-19 38.2 PAX5 CCDS46399.1 2.6e-19 36.8 PAX8 CCDS65042.1 3.3e-19 40.5 PAX5 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR001523 1 16 PR00027 Paired box protein IPR001523 19 37 PR00027 Paired box protein IPR001523 39 56 PR00027 Paired box protein IPR001523 57 74 PR00027 Paired box protein HMMPfam IPR001523 1 121 PF00292 Paired box protein IPR001356 164 219 PF00046 Homeobox HMMSmart IPR001523 1 121 SM00351 Paired box protein IPR001356 162 224 SM00389 Homeobox ProfileScan IPR001523 1 123 PS51057 Paired box protein IPR001356 160 220 PS50071 Homeobox
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_006184 343 125853,167413,612225,612227 99.7 100.0 XP_011514578 351 125853,167413,612225,612227 99.7 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KE0924 Download

>KIEE0924  1029 bp
ATGAACCAGCTTGGGGGGCTCTTTGTGAATGGCCGGCCCCTGCCTCTGGATACCCGGCAG
CAGATTGTGCGGCTAGCAGTCAGTGGAATGCGGCCCTGTGACATCTCACGGATCCTTAAG
GTATCTAATGGCTGTGTGAGCAAGATCCTAGGGCGTTACTACCGCACAGGTGTCTTGGAG
CCAAAGGGCATTGGGGGAAGCAAGCCACGGCTGGCTACACCCCCTGTGGTGGCTCGAATT
GCCCAGCTGAAGGGTGAGTGTCCAGCCCTCTTTGCCTGGGAAATCCAACGCCAACTTTGT
GCTGAAGGGCTTTGCACCCAGGACAAGACTCCCAGTGTCTCCTCCATCAACCGAGTCCTG
CGGGCATTACAGGAGGACCAGGGACTACCGTGCACACGGCTCAGGTCACCAGCTGTTTTG
GCTCCAGCTGTCCTCACTCCCCATAGTGGTTCTGAGACTCCCCGGGGTACCCACCCAGGG
ACCGGCCACCGGAATCGGACTATCTTCTCCCCAAGCCAAGCAGAGGCACTGGAGAAAGAG
TTCCAGCGTGGGCAGTATCCTGATTCAGTGGCCCGTGGAAAGCTGGCTACTGCCACCTCT
CTGCCTGAGGACACGGTGAGGGTCTGGTTTTCCAACAGAAGAGCCAAATGGCGTCGGCAA
GAGAAGCTCAAGTGGGAAATGCAGCTGCCAGGTGCTTCCCAGGGGCTGACTGTACCAAGG
GTTGCCCCAGGAATCATCTCTGCACAGCAGTCCCCTGGCAGTGTGCCCACAGCAGCCCTG
CCTGCCCTGGAACCACTGGGTCCCTCCTGCTATCAGCTGTGCTGGGCAACAGCACCAGAA
AGGTGTCTGAGTGACACCCCACCTAAAGCCTGTCTCAAGCCCTGCTGGGGCCACTTGCCC
CCACAGCCGAATTCCCTGGACTCAGGACTGCTTTGCCTTCCTTGCCCTTCCTCCCACTGT
CCCCTGGCCAGTCTTAGTGGCTCTCAGGCCCTGCTCTGGCCTGGCTGCCCACTACTGTAT
GGCTTGGAA

ORF Protein

Cloned ORF protein sequence for pF1KE0924 Download

>KIEE0924  343 aa
MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE
PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL
RALQEDQGLPCTRLRSPAVLAPAVLTPHSGSETPRGTHPGTGHRNRTIFSPSQAEALEKE
FQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQEKLKWEMQLPGASQGLTVPR
VAPGIISAQQSPGSVPTAALPALEPLGPSCYQLCWATAPERCLSDTPPKACLKPCWGHLP
PQPNSLDSGLLCLPCPSSHCPLASLSGSQALLWPGCPLLYGLE

ORF+Vector

Nucleotide Sequence (with vector) for pF1KE0924 Download

>pF1KE0924  4142 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGAACCAGCTT
GGGGGGCTCTTTGTGAATGGCCGGCCCCTGCCTCTGGATACCCGGCAGCAGATTGTGCGG
CTAGCAGTCAGTGGAATGCGGCCCTGTGACATCTCACGGATCCTTAAGGTATCTAATGGC
TGTGTGAGCAAGATCCTAGGGCGTTACTACCGCACAGGTGTCTTGGAGCCAAAGGGCATT
GGGGGAAGCAAGCCACGGCTGGCTACACCCCCTGTGGTGGCTCGAATTGCCCAGCTGAAG
GGTGAGTGTCCAGCCCTCTTTGCCTGGGAAATCCAACGCCAACTTTGTGCTGAAGGGCTT
TGCACCCAGGACAAGACTCCCAGTGTCTCCTCCATCAACCGAGTCCTGCGGGCATTACAG
GAGGACCAGGGACTACCGTGCACACGGCTCAGGTCACCAGCTGTTTTGGCTCCAGCTGTC
CTCACTCCCCATAGTGGTTCTGAGACTCCCCGGGGTACCCACCCAGGGACCGGCCACCGG
AATCGGACTATCTTCTCCCCAAGCCAAGCAGAGGCACTGGAGAAAGAGTTCCAGCGTGGG
CAGTATCCTGATTCAGTGGCCCGTGGAAAGCTGGCTACTGCCACCTCTCTGCCTGAGGAC
ACGGTGAGGGTCTGGTTTTCCAACAGAAGAGCCAAATGGCGTCGGCAAGAGAAGCTCAAG
TGGGAAATGCAGCTGCCAGGTGCTTCCCAGGGGCTGACTGTACCAAGGGTTGCCCCAGGA
ATCATCTCTGCACAGCAGTCCCCTGGCAGTGTGCCCACAGCAGCCCTGCCTGCCCTGGAA
CCACTGGGTCCCTCCTGCTATCAGCTGTGCTGGGCAACAGCACCAGAAAGGTGTCTGAGT
GACACCCCACCTAAAGCCTGTCTCAAGCCCTGCTGGGGCCACTTGCCCCCACAGCCGAAT
TCCCTGGACTCAGGACTGCTTTGCCTTCCTTGCCCTTCCTCCCACTGTCCCCTGGCCAGT
CTTAGTGGCTCTCAGGCCCTGCTCTGGCCTGGCTGCCCACTACTGTATGGCTTGGAAGTT
TAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGC
TGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCA
ATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGG
AGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGT
AAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGC
CCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTT
CCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAA
TTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCT
TTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGA
CGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTG
GAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTG
TTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCC
CTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCT
TGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAA
GTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATG
GCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAA
GCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGAT
GATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCG
CGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATC
ATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGAC
CGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGG
GCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTC
TATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAG
CGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGG
GGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAA
GGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCG
ACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCC
TGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGC
CTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTC
GGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCG
CTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCC
ACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGA
GTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGC
TCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAAC
CACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGG
ATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTC
ACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATA
GTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAA
AATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGG
TATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGC
CATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTA
AGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTA
CTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAA
ATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT
CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGG
GTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGA
AAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAA
ATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAC
GCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTT
TTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTC
AT