USP39 ORF clone FHC28713

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone FHC28713

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Clone info.

Species

human

Clone Name

pFN21AE5640 Sequence (with vector) Restriction Map

Product ID

FHC28713

ORF Sequence

DNA sequence (1695 bp)
Protein sequence (565 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIEE5640

Symbol

USP39

Alias : 65K, CGI-21, HSPC332, SAD1, SNRNP65

Description

ubiquitin specific peptidase 39, transcript variant 1

Original Clone ID

oc95640

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1695 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 565 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS33234.1 1.6e-179 100.0 USP39 CCDS74534.1 1.2e-151 99.0 USP39 CCDS58717.1 3.3e-150 100.0 USP39 CCDS58716.1 1.5e-132 92.7 USP39 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR001607 129 185 PF02148 Zinc finger IPR001394 223 551 PF00443 Peptidase C19 HMMSmart IPR001607 123 172 SM00290 Zinc finger ProfileScan IPR001607 122 183 PS50271 Zinc finger IPR001394 225 556 PS50235 Peptidase C19
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_006581 565 611594 100.0 100.0 NP_001243654 565 611594 100.0 100.0 NP_001243656 487 611594 99.0 85.3 NP_001243655 488 611594 100.0 84.2 NP_001243657 462 611594 92.7 85.3 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AE5640 Download

>KIEE5640  1695 bp
ATGTCCGGCCGGTCTAAGCGGGAGTCTCGCGGTTCCACTCGCGGGAAGCGAGAGTCTGAG
TCGCGGGGCAGCTCCGGTCGCGTCAAGCGGGAGCGAGATCGGGAGCGGGAGCCTGAGGCG
GCGAGCTCCCGGGGCAGCCCTGTGCGCGTGAAGCGGGAGTTCGAGCCGGCGAGCGCGCGC
GAGGCCCCGGCTTCTGTTGTCCCGTTTGTGCGGGTGAAGCGGGAGCGCGAGGTCGATGAG
GACTCGGAGCCTGAGCGGGAGGTGCGAGCAAAGAATGGCCGAGTGGATTCTGAGGACCGG
AGGAGCCGCCACTGCCCGTACCTGGACACCATTAACAGGAGTGTGCTGGACTTTGACTTT
GAGAAACTGTGTTCTATCTCCCTCTCACACATCAATGCTTATGCCTGTCTGGTGTGTGGC
AAGTACTTTCAAGGCCGGGGTTTGAAGTCTCACGCCTACATTCACAGTGTCCAGTTTAGC
CACCATGTTTTCCTCAACCTCCACACCCTCAAGTTTTACTGCCTTCCAGACAACTATGAG
ATCATCGATTCCTCATTGGAGGATATCACGTATGTGTTGAAGCCCACTTTCACAAAGCAG
CAAATTGCAAACTTGGACAAGCAAGCCAAATTGTCCCGGGCATATGATGGTACCACTTAC
CTGCCGGGTATTGTGGGACTGAATAACATAAAGGCCAATGATTATGCCAACGCTGTCCTT
CAGGCTCTATCTAATGTTCCTCCTCTCCGGAACTACTTTCTGGAAGAAGACAATTATAAG
AACATCAAACGTCCTCCAGGGGATATCATGTTCTTGTTGGTCCAGCGTTTTGGAGAGCTG
ATGAGAAAGCTCTGGAACCCTCGAAATTTCAAGGCACATGTGTCTCCCCATGAGATGCTT
CAGGCAGTTGTACTTTGCAGTAAGAAGACTTTTCAGATCACCAAACAAGGAGATGGCGTT
GACTTTCTGTCTTGGTTTCTGAATGCTCTGCACTCAGCTCTGGGGGGCACAAAGAAGAAA
AAGAAGACTATTGTGACTGATGTTTTCCAGGGGTCCATGAGGATCTTCACTAAAAAGCTT
CCCCATCCTGATCTGCCAGCAGAAGAAAAAGAGCAGTTGCTCCATAATGACGAGTACCAG
GAGACAATGGTGGAGTCCACTTTTATGTACCTGACGCTGGACCTTCCTACTGCCCCCCTC
TACAAGGACGAGAAGGAGCAGCTCATCATTCCCCAAGTGCCACTCTTCAACATCCTGGCT
AAGTTCAATGGCATCACTGAGAAGGAATATAAGACTTACAAGGAGAACTTTCTGAAGCGC
TTCCAGCTTACCAAGTTGCCTCCATATCTAATCTTTTGTATCAAGAGATTCACTAAGAAC
AACTTCTTTGTTGAGAAGAATCCAACTATTGTCAATTTCCCTATTACAAATGTGGATCTG
AGAGAATACTTGTCTGAAGAAGTACAAGCAGTACACAAGAATACCACCTATGACCTCATT
GCCAACATCGTGCATGACGGCAAGCCCTCCGAGGGCTCCTACCGGATCCACGTGCTTCAT
CATGGGACAGGCAAATGGTATGAATTACAAGACCTCCAGGTGACTGACATCCTTCCCCAG
ATGATCACACTGTCAGAGGCTTACATTCAGATTTGGAAGAGGCGAGATAATGATGAAACC
AACCAGCAGGGGGCT

ORF Protein

Cloned ORF protein sequence for pFN21AE5640 Download

>KIEE5640  565 aa
MSGRSKRESRGSTRGKRESESRGSSGRVKRERDREREPEAASSRGSPVRVKREFEPASAR
EAPASVVPFVRVKREREVDEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINRSVLDFDF
EKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYE
IIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVL
QALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEML
QAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKL
PHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILA
KFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDL
REYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQ
MITLSEAYIQIWKRRDNDETNQQGA

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AE5640 Download

>pFN21AE5640  6400 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGTCCGGCCGGTCTAAGCGGGAGTCTCGCGGTTC
CACTCGCGGGAAGCGAGAGTCTGAGTCGCGGGGCAGCTCCGGTCGCGTCAAGCGGGAGCG
AGATCGGGAGCGGGAGCCTGAGGCGGCGAGCTCCCGGGGCAGCCCTGTGCGCGTGAAGCG
GGAGTTCGAGCCGGCGAGCGCGCGCGAGGCCCCGGCTTCTGTTGTCCCGTTTGTGCGGGT
GAAGCGGGAGCGCGAGGTCGATGAGGACTCGGAGCCTGAGCGGGAGGTGCGAGCAAAGAA
TGGCCGAGTGGATTCTGAGGACCGGAGGAGCCGCCACTGCCCGTACCTGGACACCATTAA
CAGGAGTGTGCTGGACTTTGACTTTGAGAAACTGTGTTCTATCTCCCTCTCACACATCAA
TGCTTATGCCTGTCTGGTGTGTGGCAAGTACTTTCAAGGCCGGGGTTTGAAGTCTCACGC
CTACATTCACAGTGTCCAGTTTAGCCACCATGTTTTCCTCAACCTCCACACCCTCAAGTT
TTACTGCCTTCCAGACAACTATGAGATCATCGATTCCTCATTGGAGGATATCACGTATGT
GTTGAAGCCCACTTTCACAAAGCAGCAAATTGCAAACTTGGACAAGCAAGCCAAATTGTC
CCGGGCATATGATGGTACCACTTACCTGCCGGGTATTGTGGGACTGAATAACATAAAGGC
CAATGATTATGCCAACGCTGTCCTTCAGGCTCTATCTAATGTTCCTCCTCTCCGGAACTA
CTTTCTGGAAGAAGACAATTATAAGAACATCAAACGTCCTCCAGGGGATATCATGTTCTT
GTTGGTCCAGCGTTTTGGAGAGCTGATGAGAAAGCTCTGGAACCCTCGAAATTTCAAGGC
ACATGTGTCTCCCCATGAGATGCTTCAGGCAGTTGTACTTTGCAGTAAGAAGACTTTTCA
GATCACCAAACAAGGAGATGGCGTTGACTTTCTGTCTTGGTTTCTGAATGCTCTGCACTC
AGCTCTGGGGGGCACAAAGAAGAAAAAGAAGACTATTGTGACTGATGTTTTCCAGGGGTC
CATGAGGATCTTCACTAAAAAGCTTCCCCATCCTGATCTGCCAGCAGAAGAAAAAGAGCA
GTTGCTCCATAATGACGAGTACCAGGAGACAATGGTGGAGTCCACTTTTATGTACCTGAC
GCTGGACCTTCCTACTGCCCCCCTCTACAAGGACGAGAAGGAGCAGCTCATCATTCCCCA
AGTGCCACTCTTCAACATCCTGGCTAAGTTCAATGGCATCACTGAGAAGGAATATAAGAC
TTACAAGGAGAACTTTCTGAAGCGCTTCCAGCTTACCAAGTTGCCTCCATATCTAATCTT
TTGTATCAAGAGATTCACTAAGAACAACTTCTTTGTTGAGAAGAATCCAACTATTGTCAA
TTTCCCTATTACAAATGTGGATCTGAGAGAATACTTGTCTGAAGAAGTACAAGCAGTACA
CAAGAATACCACCTATGACCTCATTGCCAACATCGTGCATGACGGCAAGCCCTCCGAGGG
CTCCTACCGGATCCACGTGCTTCATCATGGGACAGGCAAATGGTATGAATTACAAGACCT
CCAGGTGACTGACATCCTTCCCCAGATGATCACACTGTCAGAGGCTTACATTCAGATTTG
GAAGAGGCGAGATAATGATGAAACCAACCAGCAGGGGGCTGTTTAAACGAATTCGGGCTC
GGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACA
AAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCC
TTGGGGCGGCCGCTTCGAGCAGACATGATAAGATACATTGATGAGTTTGGACAAACCACA
ACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTATTT
GTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAATTGCATTCATTTTATGTTT
CAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGCAAGTAAAACCTCTACAAATGTGGT
AAAATCGAATTCTAATGGATCCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAG
TAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTAATGGTT
TCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTT
TTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAA
TAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTT
TTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGAT
GCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAG
ATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTCAAAGTTCTG
CTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATA
CACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGAT
GGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCC
AACTTACTTCTGACAACTATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATG
GGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAAC
GACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACT
GGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAA
GTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCT
GGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCC
TCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGA
CAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAATTCGAAATGACCGACCAA
GCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAG
GGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAA
AGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATC
GACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCC
CTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCG
CCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTT
CGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACC
GCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGC
CACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAG
AGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCG
CTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAA
CCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAG
GATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACT
CACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTAT
AGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAA
AAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAG
GTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTG
CCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATT
AAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGT
ACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT