FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5640, 565 aa 1>>>pF1KE5640 565 - 565 aa - 565 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.8304+/-0.00113; mu= 6.3079+/- 0.068 mean_var=127.7999+/-26.085, 0's: 0 Z-trim(106.9): 61 B-trim: 5 in 1/51 Lambda= 0.113451 statistics sampled from 9207 (9245) to 9207 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.284), width: 16 Scan time: 2.690 The best scores are: opt bits E(32554) CCDS33234.1 USP39 gene_id:10713|Hs108|chr2 ( 565) 3760 627.2 1.6e-179 CCDS74534.1 USP39 gene_id:10713|Hs108|chr2 ( 487) 3193 534.4 1.2e-151 CCDS58717.1 USP39 gene_id:10713|Hs108|chr2 ( 488) 3164 529.6 3.3e-150 CCDS58716.1 USP39 gene_id:10713|Hs108|chr2 ( 462) 2805 470.9 1.5e-132 >>CCDS33234.1 USP39 gene_id:10713|Hs108|chr2 (565 aa) initn: 3760 init1: 3760 opt: 3760 Z-score: 3336.3 bits: 627.2 E(32554): 1.6e-179 Smith-Waterman score: 3760; 100.0% identity (100.0% similar) in 565 aa overlap (1-565:1-565) 10 20 30 40 50 60 pF1KE5 MSGRSKRESRGSTRGKRESESRGSSGRVKRERDREREPEAASSRGSPVRVKREFEPASAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MSGRSKRESRGSTRGKRESESRGSSGRVKRERDREREPEAASSRGSPVRVKREFEPASAR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 EAPASVVPFVRVKREREVDEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINRSVLDFDF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 EAPASVVPFVRVKREREVDEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINRSVLDFDF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 EKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 EKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 IIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 IIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 QALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 QALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEML 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 QAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 QAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 PHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 PHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILA 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 KFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 KFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDL 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE5 REYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 REYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQ 490 500 510 520 530 540 550 560 pF1KE5 MITLSEAYIQIWKRRDNDETNQQGA ::::::::::::::::::::::::: CCDS33 MITLSEAYIQIWKRRDNDETNQQGA 550 560 >>CCDS74534.1 USP39 gene_id:10713|Hs108|chr2 (487 aa) initn: 3189 init1: 3189 opt: 3193 Z-score: 2835.8 bits: 534.4 E(32554): 1.2e-151 Smith-Waterman score: 3193; 99.0% identity (99.2% similar) in 482 aa overlap (84-565:6-487) 60 70 80 90 100 110 pF1KE5 FEPASAREAPASVVPFVRVKREREVDEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINR : . :::::::::::::::::::::::: CCDS74 MLTAVPSHLFSAKNGRVDSEDRRSRHCPYLDTINR 10 20 30 120 130 140 150 160 170 pF1KE5 SVLDFDFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 SVLDFDFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFY 40 50 60 70 80 90 180 190 200 210 220 230 pF1KE5 CLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 CLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKAN 100 110 120 130 140 150 240 250 260 270 280 290 pF1KE5 DYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 DYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAH 160 170 180 190 200 210 300 310 320 330 340 350 pF1KE5 VSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 VSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSM 220 230 240 250 260 270 360 370 380 390 400 410 pF1KE5 RIFTKKLPHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 RIFTKKLPHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQV 280 290 300 310 320 330 420 430 440 450 460 470 pF1KE5 PLFNILAKFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 PLFNILAKFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNF 340 350 360 370 380 390 480 490 500 510 520 530 pF1KE5 PITNVDLREYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 PITNVDLREYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQ 400 410 420 430 440 450 540 550 560 pF1KE5 VTDILPQMITLSEAYIQIWKRRDNDETNQQGA :::::::::::::::::::::::::::::::: CCDS74 VTDILPQMITLSEAYIQIWKRRDNDETNQQGA 460 470 480 >>CCDS58717.1 USP39 gene_id:10713|Hs108|chr2 (488 aa) initn: 3164 init1: 3164 opt: 3164 Z-score: 2810.2 bits: 529.6 E(32554): 3.3e-150 Smith-Waterman score: 3164; 100.0% identity (100.0% similar) in 476 aa overlap (1-476:1-476) 10 20 30 40 50 60 pF1KE5 MSGRSKRESRGSTRGKRESESRGSSGRVKRERDREREPEAASSRGSPVRVKREFEPASAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 MSGRSKRESRGSTRGKRESESRGSSGRVKRERDREREPEAASSRGSPVRVKREFEPASAR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 EAPASVVPFVRVKREREVDEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINRSVLDFDF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 EAPASVVPFVRVKREREVDEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINRSVLDFDF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 EKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 EKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 IIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 IIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 QALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 QALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEML 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 QAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 QAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 PHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 PHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILA 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 KFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 KFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITGQAN 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE5 REYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQ CCDS58 GMNYKTSR >>CCDS58716.1 USP39 gene_id:10713|Hs108|chr2 (462 aa) initn: 2953 init1: 2805 opt: 2805 Z-score: 2493.0 bits: 470.9 E(32554): 1.5e-132 Smith-Waterman score: 2910; 92.7% identity (93.4% similar) in 482 aa overlap (84-565:6-462) 60 70 80 90 100 110 pF1KE5 FEPASAREAPASVVPFVRVKREREVDEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINR : . ::::::::::::::::::::::: CCDS58 MLTAVPSHLFSAKNGRVDSEDRRSRHCPYLDTIN- 10 20 30 120 130 140 150 160 170 pF1KE5 SVLDFDFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFY :.: . ::::::::::::::::::::::::::::: CCDS58 -------------SFS-----------PFPTGRGLKSHAYIHSVQFSHHVFLNLHTLKFY 40 50 60 70 180 190 200 210 220 230 pF1KE5 CLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 CLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKAN 80 90 100 110 120 130 240 250 260 270 280 290 pF1KE5 DYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 DYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAH 140 150 160 170 180 190 300 310 320 330 340 350 pF1KE5 VSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 VSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSM 200 210 220 230 240 250 360 370 380 390 400 410 pF1KE5 RIFTKKLPHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 RIFTKKLPHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQV 260 270 280 290 300 310 420 430 440 450 460 470 pF1KE5 PLFNILAKFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 PLFNILAKFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNF 320 330 340 350 360 370 480 490 500 510 520 530 pF1KE5 PITNVDLREYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 PITNVDLREYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQ 380 390 400 410 420 430 540 550 560 pF1KE5 VTDILPQMITLSEAYIQIWKRRDNDETNQQGA :::::::::::::::::::::::::::::::: CCDS58 VTDILPQMITLSEAYIQIWKRRDNDETNQQGA 440 450 460 565 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 05:27:07 2016 done: Tue Nov 8 05:27:08 2016 Total Scan time: 2.690 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]