LINGO4 ORF clone FHC11733

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone FHC11733

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Clone info.

Species

human

Clone Name

pFN21AB9642 Sequence (with vector) Restriction Map

Product ID

FHC11733

Flexi Clone PID

FXC11733

ORF Sequence

DNA sequence (1779 bp)
Protein sequence (593 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB529313]

Gene

KIBB9642

Symbol

LINGO4

Alias : DAAT9248, LRRN6D, PRO34002

Description

leucine rich repeat and Ig domain containing 4

Original Clone ID

cp00225

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1779 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 593 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS30855.1 3.1e-165 100.0 LINGO4 CCDS45905.1 1.9e-59 44.8 LINGO3 CCDS73766.1 5e-58 43.8 LINGO1 CCDS45313.1 5.1e-58 43.8 LINGO1 CCDS6524.1 7.8e-57 43.7 LINGO2 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan NULL 86 99 PR00019 NULL NULL 275 288 PR00019 NULL HMMPfam IPR001611 86 107 PF00560 Leucine-rich repeat IPR001611 278 297 PF00560 Leucine-rich repeat IPR013098 421 501 PF07679 Immunoglobulin I-set HMMSmart IPR000372 30 64 SM00013 Leucine-rich repeat-containing N-terminal IPR003591 63 82 SM00369 Leucine-rich repeat IPR003591 83 106 SM00369 Leucine-rich repeat IPR003591 107 130 SM00369 Leucine-rich repeat IPR003591 131 154 SM00369 Leucine-rich repeat IPR003591 155 178 SM00369 Leucine-rich repeat IPR003591 179 202 SM00369 Leucine-rich repeat IPR003591 203 226 SM00369 Leucine-rich repeat IPR003591 275 298 SM00369 Leucine-rich repeat IPR003591 299 322 SM00369 Leucine-rich repeat IPR003591 323 346 SM00369 Leucine-rich repeat IPR000483 358 411 SM00082 Cysteine-rich flanking region IPR003599 420 502 SM00409 Immunoglobulin subtype IPR003598 426 491 SM00408 Immunoglobulin subtype 2 ProfileScan IPR001611 61 82 PS51450 Leucine-rich repeat IPR001611 85 106 PS51450 Leucine-rich repeat IPR001611 109 130 PS51450 Leucine-rich repeat IPR001611 157 178 PS51450 Leucine-rich repeat IPR001611 181 202 PS51450 Leucine-rich repeat IPR001611 277 298 PS51450 Leucine-rich repeat IPR001611 301 322 PS51450 Leucine-rich repeat IPR001611 349 370 PS51450 Leucine-rich repeat IPR007110 412 502 PS50835 Immunoglobulin-like
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 10 AWPPWPPLLFLLLLPGGSGGSCP 32 SECONDARY 23 2 534 MVLAVGFLPFLTSVTLCFGLIAL 556 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001004432 593 609794 100.0 100.0 NP_001094861 592 609792 44.8 96.5 NP_001288124 614 609791 43.8 96.8 NP_001288115 614 609791 43.8 96.8 NP_001288126 614 609791 43.8 96.8 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB9642 Download

>KIBB9642  1779 bp
ATGGATGCAGCCACAGCTCCAAAGCAAGCCTGGCCCCCATGGCCCCCGCTCCTTTTCCTC
CTCCTCCTACCTGGAGGGAGCGGTGGCAGCTGCCCTGCTGTGTGTGACTGCACCTCCCAG
CCCCAGGCTGTGCTCTGTGGCCACAGGCAACTGGAGGCTGTACCTGGAGGACTCCCACTG
GACACTGAGCTCCTGGACCTGAGTGGGAACCGCCTGTGGGGGCTCCAGCAGGGAATGCTC
TCCCGCCTGAGCCTGCTCCAGGAATTGGACCTCAGCTACAACCAGCTCTCAACCCTTGAG
CCTGGGGCCTTCCATGGCCTACAAAGCCTACTCACCCTGAGGCTGCAGGGCAATCGGCTC
AGAATCATGGGGCCTGGGGTCTTCTCAGGCCTCTCTGCTCTGACCCTGCTGGACCTCCGC
CTCAACCAGATTGTTCTCTTCCTAGATGGAGCTTTTGGGGAGCTAGGCAGCCTCCAGAAG
CTGGAGGTTGGGGACAACCACCTGGTATTTGTGGCTCCGGGGGCCTTTGCAGGGCTAGCC
AAGTTGAGCACCCTCACCCTGGAGCGCTGCAACCTCAGCACAGTGCCTGGCCTAGCCCTT
GCCCGTCTCCCGGCACTAGTGGCCCTAAGGCTTAGAGAACTGGATATTGGGAGGCTGCCA
GCTGGGGCCCTGCGGGGGCTGGGGCAGCTCAAGGAGCTGGAGATCCACCTCTGGCCATCT
CTGGAGGCTCTGGACCCTGGGAGCCTGGTTGGGCTCAATCTCAGCAGCCTGGCCATCACT
CGCTGCAATCTGAGCTCGGTGCCCTTCCAAGCACTGTACCACCTCAGCTTCCTCAGGGTC
CTGGATCTGTCCCAGAATCCCATCTCAGCCATCCCAGCCCGAAGGCTCAGCCCCCTGGTG
CGGCTCCAGGAGCTACGCCTGTCAGGGGCATGCCTCACCTCCATTGCTGCCCATGCCTTC
CATGGCTTGACTGCCTTCCACCTCCTGGATGTGGCAGATAACGCCCTTCAGACACTAGAG
GAAACAGCTTTCCCTTCTCCAGACAAACTGGTCACCTTGAGGCTGTCTGGCAACCCCCTA
ACCTGTGACTGCCGCCTCCTCTGGCTGCTCCGGCTCCGCCGCCACCTGGACTTTGGCATG
TCCCCCCCTGCCTGTGCTGGCCCCCATCATGTCCAGGGGAAGAGCCTGAAGGAGTTTTCA
GACATCCTGCCTCCAGGGCACTTCACCTGCAAACCAGCCCTGATCCGAAAGTCGGGGCCT
CGATGGGTCATTGCAGAGGAGGGCGGGCATGCGGTTTTCTCCTGCTCTGGAGATGGAGAC
CCAGCCCCCACTGTCTCCTGGATGAGGCCTCATGGGGCTTGGCTGGGCAGGGCTGGGAGA
GTAAGGGTCCTAGAGGATGGGACACTGGAGATCCGCTCAGTGCAGCTACGGGACAGAGGG
GCCTATGTCTGTGTGGTTAGCAATGTCGCTGGGAATGACTCCCTGAGGACCTGGCTGGAA
GTCATCCAGGTGGAACCACCAAACGGCACACTTTCTGACCCCAACATCACCGTGCCAGGG
ATCCCAGGGCCTTTTTTTCTGGATAGCAGAGGTGTGGCCATGGTGCTGGCAGTCGGCTTC
CTCCCCTTCCTCACCTCAGTGACCCTCTGCTTTGGCCTGATTGCCCTTTGGAGCAAGGGC
AAAGGTCGGGTCAAACATCACATGACCTTTGACTTTGTGGCACCTCGGCCCTCTGGGGAT
AAAAACTCTGGGGGTAACCGGGTCACTGCCAAGCTCTTC

ORF Protein

Cloned ORF protein sequence for pFN21AB9642 Download

>KIBB9642  593 aa
MDAATAPKQAWPPWPPLLFLLLLPGGSGGSCPAVCDCTSQPQAVLCGHRQLEAVPGGLPL
DTELLDLSGNRLWGLQQGMLSRLSLLQELDLSYNQLSTLEPGAFHGLQSLLTLRLQGNRL
RIMGPGVFSGLSALTLLDLRLNQIVLFLDGAFGELGSLQKLEVGDNHLVFVAPGAFAGLA
KLSTLTLERCNLSTVPGLALARLPALVALRLRELDIGRLPAGALRGLGQLKELEIHLWPS
LEALDPGSLVGLNLSSLAITRCNLSSVPFQALYHLSFLRVLDLSQNPISAIPARRLSPLV
RLQELRLSGACLTSIAAHAFHGLTAFHLLDVADNALQTLEETAFPSPDKLVTLRLSGNPL
TCDCRLLWLLRLRRHLDFGMSPPACAGPHHVQGKSLKEFSDILPPGHFTCKPALIRKSGP
RWVIAEEGGHAVFSCSGDGDPAPTVSWMRPHGAWLGRAGRVRVLEDGTLEIRSVQLRDRG
AYVCVVSNVAGNDSLRTWLEVIQVEPPNGTLSDPNITVPGIPGPFFLDSRGVAMVLAVGF
LPFLTSVTLCFGLIALWSKGKGRVKHHMTFDFVAPRPSGDKNSGGNRVTAKLF

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB9642 Download

>pFN21AB9642  6484 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGGATGCAGCCACAGCTCCAAAGCAAGCCTGGCC
CCCATGGCCCCCGCTCCTTTTCCTCCTCCTCCTACCTGGAGGGAGCGGTGGCAGCTGCCC
TGCTGTGTGTGACTGCACCTCCCAGCCCCAGGCTGTGCTCTGTGGCCACAGGCAACTGGA
GGCTGTACCTGGAGGACTCCCACTGGACACTGAGCTCCTGGACCTGAGTGGGAACCGCCT
GTGGGGGCTCCAGCAGGGAATGCTCTCCCGCCTGAGCCTGCTCCAGGAATTGGACCTCAG
CTACAACCAGCTCTCAACCCTTGAGCCTGGGGCCTTCCATGGCCTACAAAGCCTACTCAC
CCTGAGGCTGCAGGGCAATCGGCTCAGAATCATGGGGCCTGGGGTCTTCTCAGGCCTCTC
TGCTCTGACCCTGCTGGACCTCCGCCTCAACCAGATTGTTCTCTTCCTAGATGGAGCTTT
TGGGGAGCTAGGCAGCCTCCAGAAGCTGGAGGTTGGGGACAACCACCTGGTATTTGTGGC
TCCGGGGGCCTTTGCAGGGCTAGCCAAGTTGAGCACCCTCACCCTGGAGCGCTGCAACCT
CAGCACAGTGCCTGGCCTAGCCCTTGCCCGTCTCCCGGCACTAGTGGCCCTAAGGCTTAG
AGAACTGGATATTGGGAGGCTGCCAGCTGGGGCCCTGCGGGGGCTGGGGCAGCTCAAGGA
GCTGGAGATCCACCTCTGGCCATCTCTGGAGGCTCTGGACCCTGGGAGCCTGGTTGGGCT
CAATCTCAGCAGCCTGGCCATCACTCGCTGCAATCTGAGCTCGGTGCCCTTCCAAGCACT
GTACCACCTCAGCTTCCTCAGGGTCCTGGATCTGTCCCAGAATCCCATCTCAGCCATCCC
AGCCCGAAGGCTCAGCCCCCTGGTGCGGCTCCAGGAGCTACGCCTGTCAGGGGCATGCCT
CACCTCCATTGCTGCCCATGCCTTCCATGGCTTGACTGCCTTCCACCTCCTGGATGTGGC
AGATAACGCCCTTCAGACACTAGAGGAAACAGCTTTCCCTTCTCCAGACAAACTGGTCAC
CTTGAGGCTGTCTGGCAACCCCCTAACCTGTGACTGCCGCCTCCTCTGGCTGCTCCGGCT
CCGCCGCCACCTGGACTTTGGCATGTCCCCCCCTGCCTGTGCTGGCCCCCATCATGTCCA
GGGGAAGAGCCTGAAGGAGTTTTCAGACATCCTGCCTCCAGGGCACTTCACCTGCAAACC
AGCCCTGATCCGAAAGTCGGGGCCTCGATGGGTCATTGCAGAGGAGGGCGGGCATGCGGT
TTTCTCCTGCTCTGGAGATGGAGACCCAGCCCCCACTGTCTCCTGGATGAGGCCTCATGG
GGCTTGGCTGGGCAGGGCTGGGAGAGTAAGGGTCCTAGAGGATGGGACACTGGAGATCCG
CTCAGTGCAGCTACGGGACAGAGGGGCCTATGTCTGTGTGGTTAGCAATGTCGCTGGGAA
TGACTCCCTGAGGACCTGGCTGGAAGTCATCCAGGTGGAACCACCAAACGGCACACTTTC
TGACCCCAACATCACCGTGCCAGGGATCCCAGGGCCTTTTTTTCTGGATAGCAGAGGTGT
GGCCATGGTGCTGGCAGTCGGCTTCCTCCCCTTCCTCACCTCAGTGACCCTCTGCTTTGG
CCTGATTGCCCTTTGGAGCAAGGGCAAAGGTCGGGTCAAACATCACATGACCTTTGACTT
TGTGGCACCTCGGCCCTCTGGGGATAAAAACTCTGGGGGTAACCGGGTCACTGCCAAGCT
CTTCGTTTAAACGAATTCGGGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCA
TGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCG
CTGAGCAATAACTAGCATAACCCCTTGGGGCGGCCGCTTCGAGCAGACATGATAAGATAC
ATTGATGAGTTTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAA
ATTTGTGATGCTATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAAC
AACAATTGCATTCATTTTATGTTTCAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGC
AAGTAAAACCTCTACAAATGTGGTAAAATCGAATTCTAATGGATCCTCTTTGCGCTTGCG
TTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGC
GGACTGGCTTTCTACGTAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTG
CGCGGAACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGA
CAATAACCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACAT
TTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCA
GAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATC
GAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCA
ATGATGAGCACTTTCAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTATTGACGCCGGG
CAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCA
GTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATA
ACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACTATCGGAGGACCGAAGGAG
CTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCG
GAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCA
ACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTA
ATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCT
GGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCA
GCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAG
GCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCAT
TGGTAATTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGG
TAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCC
AGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCC
CCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGAC
TATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCC
TGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATA
GCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGC
ACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCA
ACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAG
CGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTA
GAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTG
GTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGC
AGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGT
CTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAA
GGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCT
TCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGT
GGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGC
GGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAA
CGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTC
GTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAG
ATCT