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SpecieshumanProduct IDFXC11733Cloning SiteSgfI-PmeIGeneKIBB9642SymbolLINGO4
Alias : DAAT9248, LRRN6D, PRO34002Descriptionleucine rich repeat and Ig domain containing 4Original Clone IDcp00225
Length: 1779 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 593 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS30855.1 3.1e-165 100.0 LINGO4 CCDS45905.1 1.9e-59 44.8 LINGO3 CCDS73766.1 5e-58 43.8 LINGO1 CCDS45313.1 5.1e-58 43.8 LINGO1 CCDS6524.1 7.8e-57 43.7 LINGO2
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan NULL 86 99 PR00019 NULL NULL 275 288 PR00019 NULL HMMPfam IPR001611 86 107 PF00560 Leucine-rich repeat IPR001611 278 297 PF00560 Leucine-rich repeat IPR013098 421 501 PF07679 Immunoglobulin I-set HMMSmart IPR000372 30 64 SM00013 Leucine-rich repeat-containing N-terminal IPR003591 63 82 SM00369 Leucine-rich repeat IPR003591 83 106 SM00369 Leucine-rich repeat IPR003591 107 130 SM00369 Leucine-rich repeat IPR003591 131 154 SM00369 Leucine-rich repeat IPR003591 155 178 SM00369 Leucine-rich repeat IPR003591 179 202 SM00369 Leucine-rich repeat IPR003591 203 226 SM00369 Leucine-rich repeat IPR003591 275 298 SM00369 Leucine-rich repeat IPR003591 299 322 SM00369 Leucine-rich repeat IPR003591 323 346 SM00369 Leucine-rich repeat IPR000483 358 411 SM00082 Cysteine-rich flanking region IPR003599 420 502 SM00409 Immunoglobulin subtype IPR003598 426 491 SM00408 Immunoglobulin subtype 2 ProfileScan IPR001611 61 82 PS51450 Leucine-rich repeat IPR001611 85 106 PS51450 Leucine-rich repeat IPR001611 109 130 PS51450 Leucine-rich repeat IPR001611 157 178 PS51450 Leucine-rich repeat IPR001611 181 202 PS51450 Leucine-rich repeat IPR001611 277 298 PS51450 Leucine-rich repeat IPR001611 301 322 PS51450 Leucine-rich repeat IPR001611 349 370 PS51450 Leucine-rich repeat IPR007110 412 502 PS50835 Immunoglobulin-like
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 10 AWPPWPPLLFLLLLPGGSGGSCP 32 SECONDARY 23 2 534 MVLAVGFLPFLTSVTLCFGLIAL 556 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001004432 593 609794 100.0 100.0 NP_001094861 592 609792 44.8 96.5 NP_001288124 614 609791 43.8 96.8 NP_001288115 614 609791 43.8 96.8 NP_001288126 614 609791 43.8 96.8 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB9642 Download>KIBB9642 1779 bp ATGGATGCAGCCACAGCTCCAAAGCAAGCCTGGCCCCCATGGCCCCCGCTCCTTTTCCTC CTCCTCCTACCTGGAGGGAGCGGTGGCAGCTGCCCTGCTGTGTGTGACTGCACCTCCCAG CCCCAGGCTGTGCTCTGTGGCCACAGGCAACTGGAGGCTGTACCTGGAGGACTCCCACTG GACACTGAGCTCCTGGACCTGAGTGGGAACCGCCTGTGGGGGCTCCAGCAGGGAATGCTC TCCCGCCTGAGCCTGCTCCAGGAATTGGACCTCAGCTACAACCAGCTCTCAACCCTTGAG CCTGGGGCCTTCCATGGCCTACAAAGCCTACTCACCCTGAGGCTGCAGGGCAATCGGCTC AGAATCATGGGGCCTGGGGTCTTCTCAGGCCTCTCTGCTCTGACCCTGCTGGACCTCCGC CTCAACCAGATTGTTCTCTTCCTAGATGGAGCTTTTGGGGAGCTAGGCAGCCTCCAGAAG CTGGAGGTTGGGGACAACCACCTGGTATTTGTGGCTCCGGGGGCCTTTGCAGGGCTAGCC AAGTTGAGCACCCTCACCCTGGAGCGCTGCAACCTCAGCACAGTGCCTGGCCTAGCCCTT GCCCGTCTCCCGGCACTAGTGGCCCTAAGGCTTAGAGAACTGGATATTGGGAGGCTGCCA GCTGGGGCCCTGCGGGGGCTGGGGCAGCTCAAGGAGCTGGAGATCCACCTCTGGCCATCT CTGGAGGCTCTGGACCCTGGGAGCCTGGTTGGGCTCAATCTCAGCAGCCTGGCCATCACT CGCTGCAATCTGAGCTCGGTGCCCTTCCAAGCACTGTACCACCTCAGCTTCCTCAGGGTC CTGGATCTGTCCCAGAATCCCATCTCAGCCATCCCAGCCCGAAGGCTCAGCCCCCTGGTG CGGCTCCAGGAGCTACGCCTGTCAGGGGCATGCCTCACCTCCATTGCTGCCCATGCCTTC CATGGCTTGACTGCCTTCCACCTCCTGGATGTGGCAGATAACGCCCTTCAGACACTAGAG GAAACAGCTTTCCCTTCTCCAGACAAACTGGTCACCTTGAGGCTGTCTGGCAACCCCCTA ACCTGTGACTGCCGCCTCCTCTGGCTGCTCCGGCTCCGCCGCCACCTGGACTTTGGCATG TCCCCCCCTGCCTGTGCTGGCCCCCATCATGTCCAGGGGAAGAGCCTGAAGGAGTTTTCA GACATCCTGCCTCCAGGGCACTTCACCTGCAAACCAGCCCTGATCCGAAAGTCGGGGCCT CGATGGGTCATTGCAGAGGAGGGCGGGCATGCGGTTTTCTCCTGCTCTGGAGATGGAGAC CCAGCCCCCACTGTCTCCTGGATGAGGCCTCATGGGGCTTGGCTGGGCAGGGCTGGGAGA GTAAGGGTCCTAGAGGATGGGACACTGGAGATCCGCTCAGTGCAGCTACGGGACAGAGGG GCCTATGTCTGTGTGGTTAGCAATGTCGCTGGGAATGACTCCCTGAGGACCTGGCTGGAA GTCATCCAGGTGGAACCACCAAACGGCACACTTTCTGACCCCAACATCACCGTGCCAGGG ATCCCAGGGCCTTTTTTTCTGGATAGCAGAGGTGTGGCCATGGTGCTGGCAGTCGGCTTC CTCCCCTTCCTCACCTCAGTGACCCTCTGCTTTGGCCTGATTGCCCTTTGGAGCAAGGGC AAAGGTCGGGTCAAACATCACATGACCTTTGACTTTGTGGCACCTCGGCCCTCTGGGGAT AAAAACTCTGGGGGTAACCGGGTCACTGCCAAGCTCTTC
Cloned ORF protein sequence for pF1KB9642 Download>KIBB9642 593 aa MDAATAPKQAWPPWPPLLFLLLLPGGSGGSCPAVCDCTSQPQAVLCGHRQLEAVPGGLPL DTELLDLSGNRLWGLQQGMLSRLSLLQELDLSYNQLSTLEPGAFHGLQSLLTLRLQGNRL RIMGPGVFSGLSALTLLDLRLNQIVLFLDGAFGELGSLQKLEVGDNHLVFVAPGAFAGLA KLSTLTLERCNLSTVPGLALARLPALVALRLRELDIGRLPAGALRGLGQLKELEIHLWPS LEALDPGSLVGLNLSSLAITRCNLSSVPFQALYHLSFLRVLDLSQNPISAIPARRLSPLV RLQELRLSGACLTSIAAHAFHGLTAFHLLDVADNALQTLEETAFPSPDKLVTLRLSGNPL TCDCRLLWLLRLRRHLDFGMSPPACAGPHHVQGKSLKEFSDILPPGHFTCKPALIRKSGP RWVIAEEGGHAVFSCSGDGDPAPTVSWMRPHGAWLGRAGRVRVLEDGTLEIRSVQLRDRG AYVCVVSNVAGNDSLRTWLEVIQVEPPNGTLSDPNITVPGIPGPFFLDSRGVAMVLAVGF LPFLTSVTLCFGLIALWSKGKGRVKHHMTFDFVAPRPSGDKNSGGNRVTAKLF
Nucleotide Sequence (with vector) for pF1KB9642 Download>pF1KB9642 4892 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGATGCAGCC ACAGCTCCAAAGCAAGCCTGGCCCCCATGGCCCCCGCTCCTTTTCCTCCTCCTCCTACCT GGAGGGAGCGGTGGCAGCTGCCCTGCTGTGTGTGACTGCACCTCCCAGCCCCAGGCTGTG CTCTGTGGCCACAGGCAACTGGAGGCTGTACCTGGAGGACTCCCACTGGACACTGAGCTC CTGGACCTGAGTGGGAACCGCCTGTGGGGGCTCCAGCAGGGAATGCTCTCCCGCCTGAGC CTGCTCCAGGAATTGGACCTCAGCTACAACCAGCTCTCAACCCTTGAGCCTGGGGCCTTC CATGGCCTACAAAGCCTACTCACCCTGAGGCTGCAGGGCAATCGGCTCAGAATCATGGGG CCTGGGGTCTTCTCAGGCCTCTCTGCTCTGACCCTGCTGGACCTCCGCCTCAACCAGATT GTTCTCTTCCTAGATGGAGCTTTTGGGGAGCTAGGCAGCCTCCAGAAGCTGGAGGTTGGG GACAACCACCTGGTATTTGTGGCTCCGGGGGCCTTTGCAGGGCTAGCCAAGTTGAGCACC CTCACCCTGGAGCGCTGCAACCTCAGCACAGTGCCTGGCCTAGCCCTTGCCCGTCTCCCG GCACTAGTGGCCCTAAGGCTTAGAGAACTGGATATTGGGAGGCTGCCAGCTGGGGCCCTG CGGGGGCTGGGGCAGCTCAAGGAGCTGGAGATCCACCTCTGGCCATCTCTGGAGGCTCTG GACCCTGGGAGCCTGGTTGGGCTCAATCTCAGCAGCCTGGCCATCACTCGCTGCAATCTG AGCTCGGTGCCCTTCCAAGCACTGTACCACCTCAGCTTCCTCAGGGTCCTGGATCTGTCC CAGAATCCCATCTCAGCCATCCCAGCCCGAAGGCTCAGCCCCCTGGTGCGGCTCCAGGAG CTACGCCTGTCAGGGGCATGCCTCACCTCCATTGCTGCCCATGCCTTCCATGGCTTGACT GCCTTCCACCTCCTGGATGTGGCAGATAACGCCCTTCAGACACTAGAGGAAACAGCTTTC CCTTCTCCAGACAAACTGGTCACCTTGAGGCTGTCTGGCAACCCCCTAACCTGTGACTGC CGCCTCCTCTGGCTGCTCCGGCTCCGCCGCCACCTGGACTTTGGCATGTCCCCCCCTGCC TGTGCTGGCCCCCATCATGTCCAGGGGAAGAGCCTGAAGGAGTTTTCAGACATCCTGCCT CCAGGGCACTTCACCTGCAAACCAGCCCTGATCCGAAAGTCGGGGCCTCGATGGGTCATT GCAGAGGAGGGCGGGCATGCGGTTTTCTCCTGCTCTGGAGATGGAGACCCAGCCCCCACT GTCTCCTGGATGAGGCCTCATGGGGCTTGGCTGGGCAGGGCTGGGAGAGTAAGGGTCCTA GAGGATGGGACACTGGAGATCCGCTCAGTGCAGCTACGGGACAGAGGGGCCTATGTCTGT GTGGTTAGCAATGTCGCTGGGAATGACTCCCTGAGGACCTGGCTGGAAGTCATCCAGGTG GAACCACCAAACGGCACACTTTCTGACCCCAACATCACCGTGCCAGGGATCCCAGGGCCT TTTTTTCTGGATAGCAGAGGTGTGGCCATGGTGCTGGCAGTCGGCTTCCTCCCCTTCCTC ACCTCAGTGACCCTCTGCTTTGGCCTGATTGCCCTTTGGAGCAAGGGCAAAGGTCGGGTC AAACATCACATGACCTTTGACTTTGTGGCACCTCGGCCCTCTGGGGATAAAAACTCTGGG GGTAACCGGGTCACTGCCAAGCTCTTCGTTTAAACGAATTCGAGCTCGGTACCCGGGGAT CCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGA AGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAA ACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCA TAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTT TGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCA CCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGA GTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTT GGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGG GGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGA TTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAA CAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTT CTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGG CTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAA GCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCAC CTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTT GATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACT CGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCG CCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTG ACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTC ATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGT GATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATC GCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCG GGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAA GGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAA AGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCT CCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGAC AGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCC GACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTC TCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTG TGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGA GTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAG CAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTA CACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAG AGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTG CAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTAC GGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATC AAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATG GCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGT AATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCG ATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCG CTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTG CCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGA TCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACA GAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGT GAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCA GGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTT TGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGA AGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTA AGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTT TTCTAAATACATTCAAATATGTATCCGCTCAT
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