Jatropha Genome Database

Jcr4S02936.20  
Related links:
Predicted Sequence Links:
Genome Sequence: Jcr4S02936
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl C0LE65_9ROSI 377 100.0 100.0 (tr|C0LE65) DNA-directed RNA polymerase OS=Jatropha curcas GN=rpoC1 PE=3 SV=1
Arabidopsis_pep ATCG00180.1 365 95.7 97.8 | Symbols: RPOC1 | DNA-directed RNA polymerase family protein | chrC:20251-23084 REVERSE LENGTH=680
soybean_pep Glyma11g15530.1 93.2 30.0 48.6  
Medicago_pep IMGA|Medtr4g034840.1 369 95.7 97.8 DNA-directed RNA polymerase subunit beta' (AHRD V1 *-*- Q9BBS8); contains Interpro domain(s) IPR005294 ATPase, F1 complex, alpha subunit chr04_pseudomolecule_IMGAG_V3.5 10885330-10876279 E EGN_Mt100125 20100825
grape_pep GSVIVT01017094001 123 86.4 92.4  
castor_bean_cds 51325.m000005 902 96.3 96.3 DNA-directed RNA polymerase beta chain, putative
castor_bean_pep 51325.m000005 354 97.8 98.3 DNA-directed RNA polymerase beta chain, putative
JAT_unigene contig00003 1092 100.0 100.0 length=10213 numreads=756 gene=isogroup00001 status=ig_thresh
A list of protein families, domains and functional sites (searches in InterPro)
Jcr4S02936.20 length: 195 aa.
IPR000722 RNA polymerase, alpha subunit
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMPfam PF00623 RNA_pol_Rpb1_2 4e-46 3-144
IPR006592 RNA polymerase, N-terminal
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMSmart SM00663 no description 1.1e-61 1-173
IPR007066 RNA polymerase Rpb1, domain 3
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMPfam PF04983 RNA_pol_Rpb1_3 4.5e-06 148-176
no_ID  
HMMPanther PTHR19376 FAMILY 5e-107 1-174
HMMPanther PTHR19376:SF4 DNA-DIRECTED 5e-107 1-174
superfamily SSF64484 beta 2.9e-81 1-176