Jatropha Genome Database
- Jcr4S02936.20
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Jcr4S02936.20
(195 letters)
Database: Medicago_aa3.5
47,529 sequences; 14,043,872 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g034840.1 DNA-directed RNA polymerase subunit beta' (... 369 e-103
IMGA|Medtr4g051130.1 DNA-directed RNA polymerase (AHRD V1 ***- B... 366 e-102
IMGA|Medtr3g062790.2 DNA-directed RNA polymerase subunit beta' (... 366 e-102
IMGA|Medtr3g062790.3 DNA-directed RNA polymerase subunit beta' (... 365 e-102
IMGA|Medtr3g062790.1 DNA-directed RNA polymerase subunit beta' (... 365 e-102
IMGA|Medtr3g062770.1 DNA-directed RNA polymerase subunit beta' (... 365 e-102
IMGA|AC151738_16.1 DNA-directed RNA polymerase (AHRD V1 ***- B5L... 303 5e-83
IMGA|Medtr3g053910.1 DNA-directed RNA polymerase (AHRD V1 *-*- B... 230 3e-61
IMGA|Medtr4g009210.1 DNA-directed RNA polymerase (AHRD V1 *-*- B... 132 1e-31
IMGA|Medtr1g016630.1 DNA-directed RNA polymerase (Fragment) (AHR... 97 5e-21
IMGA|Medtr4g061800.1 DNA-directed RNA polymerase subunit beta' (... 97 6e-21
IMGA|Medtr4g061700.1 DNA-directed RNA polymerase (AHRD V1 ***- B... 97 7e-21
IMGA|Medtr5g023020.1 DNA-directed RNA polymerase (Fragment) (AHR... 82 2e-16
IMGA|Medtr4g086290.1 DNA-directed RNA polymerase subunit beta' (... 81 5e-16
IMGA|Medtr4g121760.1 DNA-directed RNA polymerase subunit beta' (... 67 1e-11
IMGA|Medtr3g047940.1 DNA-directed RNA polymerase (AHRD V1 ***- B... 65 3e-11
IMGA|Medtr8g038990.1 DNA-directed RNA polymerase subunit 1 (AHRD... 61 5e-10
IMGA|Medtr5g011000.1 DNA-directed RNA polymerase subunit beta' (... 58 4e-09
>IMGA|Medtr4g034840.1 DNA-directed RNA polymerase subunit beta' (AHRD
V1 *-*- Q9BBS8); contains Interpro domain(s) IPR005294
ATPase, F1 complex, alpha subunit
chr04_pseudomolecule_IMGAG_V3.5 10885330-10876279 E
EGN_Mt100125 20100825
Length = 2644
Score = 369 bits (947), Expect = e-103, Method: Compositional matrix adjust.
Identities = 176/184 (95%), Positives = 180/184 (97%)
Query: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLASNIGVAKSKI 60
+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ F+IRGLIR+H ASNIGVAKSKI
Sbjct: 845 LLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHFASNIGVAKSKI 904
Query: 61 REKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF 120
REKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF
Sbjct: 905 REKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF 964
Query: 121 DGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI 180
DGDQMAVHVPLSLEAQ EARLLMFSH NLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI
Sbjct: 965 DGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI 1024
Query: 181 CANR 184
CANR
Sbjct: 1025 CANR 1028
>IMGA|Medtr4g051130.1 DNA-directed RNA polymerase (AHRD V1 ***-
B5LMM4_CICAR); contains Interpro domain(s) IPR015712
DNA-directed RNA polymerase, subunit 2
chr04_pseudomolecule_IMGAG_V3.5 15123946-15117820 E
EGN_Mt100125 20100825
Length = 1748
Score = 366 bits (940), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/184 (95%), Positives = 180/184 (97%)
Query: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLASNIGVAKSKI 60
+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ F+IRGLIR+H ASNIGVAKSKI
Sbjct: 1451 LLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHFASNIGVAKSKI 1510
Query: 61 REKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF 120
REKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF
Sbjct: 1511 REKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF 1570
Query: 121 DGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI 180
DGDQMAVHVPLSLEAQ EARLLMFSH NLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI
Sbjct: 1571 DGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI 1630
Query: 181 CANR 184
CANR
Sbjct: 1631 CANR 1634
>IMGA|Medtr3g062790.2 DNA-directed RNA polymerase subunit beta'
(AHRD V1 ***- Q9BBS8); contains Interpro domain(s)
IPR006592 RNA polymerase, N-terminal
chr03_pseudomolecule_IMGAG_V3.5 19874133-19880006 E
EGN_Mt100125 20100825
Length = 733
Score = 366 bits (939), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/184 (95%), Positives = 180/184 (97%)
Query: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLASNIGVAKSKI 60
+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ F+IRGLIR+H ASNIGVAKSKI
Sbjct: 422 LLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHFASNIGVAKSKI 481
Query: 61 REKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF 120
REKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF
Sbjct: 482 REKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF 541
Query: 121 DGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI 180
DGDQMAVHVPLSLEAQ EARLLMFSH NLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI
Sbjct: 542 DGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI 601
Query: 181 CANR 184
CANR
Sbjct: 602 CANR 605
>IMGA|Medtr3g062790.3 DNA-directed RNA polymerase subunit beta'
(AHRD V1 ***- Q9BBS8); contains Interpro domain(s)
IPR006592 RNA polymerase, N-terminal
chr03_pseudomolecule_IMGAG_V3.5 19874133-19880006 E
EGN_Mt100125 20100825
Length = 733
Score = 365 bits (938), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/184 (95%), Positives = 180/184 (97%)
Query: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLASNIGVAKSKI 60
+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ F+IRGLIR+H ASNIGVAKSKI
Sbjct: 422 LLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHFASNIGVAKSKI 481
Query: 61 REKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF 120
REKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF
Sbjct: 482 REKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF 541
Query: 121 DGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI 180
DGDQMAVHVPLSLEAQ EARLLMFSH NLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI
Sbjct: 542 DGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI 601
Query: 181 CANR 184
CANR
Sbjct: 602 CANR 605
>IMGA|Medtr3g062790.1 DNA-directed RNA polymerase subunit beta'
(AHRD V1 ***- Q9BBS8); contains Interpro domain(s)
IPR006592 RNA polymerase, N-terminal
chr03_pseudomolecule_IMGAG_V3.5 19874133-19880006 E
EGN_Mt100125 20100825
Length = 790
Score = 365 bits (938), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/184 (95%), Positives = 180/184 (97%)
Query: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLASNIGVAKSKI 60
+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ F+IRGLIR+H ASNIGVAKSKI
Sbjct: 479 LLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHFASNIGVAKSKI 538
Query: 61 REKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF 120
REKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF
Sbjct: 539 REKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF 598
Query: 121 DGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI 180
DGDQMAVHVPLSLEAQ EARLLMFSH NLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI
Sbjct: 599 DGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI 658
Query: 181 CANR 184
CANR
Sbjct: 659 CANR 662
>IMGA|Medtr3g062770.1 DNA-directed RNA polymerase subunit beta'
(AHRD V1 ***- Q9BBS8); contains Interpro domain(s)
IPR006592 RNA polymerase, N-terminal
chr03_pseudomolecule_IMGAG_V3.5 19866315-19872184 E
EGN_Mt100125 20100825
Length = 790
Score = 365 bits (938), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/184 (95%), Positives = 180/184 (97%)
Query: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLASNIGVAKSKI 60
+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ F+IRGLIR+H ASNIGVAKSKI
Sbjct: 479 LLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHFASNIGVAKSKI 538
Query: 61 REKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF 120
REKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF
Sbjct: 539 REKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF 598
Query: 121 DGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI 180
DGDQMAVHVPLSLEAQ EARLLMFSH NLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI
Sbjct: 599 DGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI 658
Query: 181 CANR 184
CANR
Sbjct: 659 CANR 662
>IMGA|AC151738_16.1 DNA-directed RNA polymerase (AHRD V1 ***-
B5LMM5_CICAR); contains Interpro domain(s) IPR006592
RNA polymerase, N-terminal AC151738.84 47513-46104 H
EGN_Mt100125 20100825
Length = 404
Score = 303 bits (775), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 152/184 (82%), Positives = 156/184 (84%), Gaps = 22/184 (11%)
Query: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLASNIGVAKSKI 60
+LGKRVDYSGRSVIV F+IRGLIR+H ASNIGVAKSKI
Sbjct: 138 LLGKRVDYSGRSVIVT----------------------FLIRGLIRKHFASNIGVAKSKI 175
Query: 61 REKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF 120
REKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF
Sbjct: 176 REKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF 235
Query: 121 DGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI 180
DGDQMAVHVPLSLEAQ EARLLMFS NLLSPAIGDPISVPTQDMLI LYVLTSGNRRGI
Sbjct: 236 DGDQMAVHVPLSLEAQVEARLLMFSDTNLLSPAIGDPISVPTQDMLIRLYVLTSGNRRGI 295
Query: 181 CANR 184
CANR
Sbjct: 296 CANR 299
>IMGA|Medtr3g053910.1 DNA-directed RNA polymerase (AHRD V1 *-*-
B5LMM5_CICAR); contains Interpro domain(s) IPR006592
RNA polymerase, N-terminal
chr03_pseudomolecule_IMGAG_V3.5 16892815-16869607 E
EGN_Mt100125 20100825
Length = 2083
Score = 230 bits (587), Expect = 3e-61, Method: Composition-based stats.
Identities = 106/112 (94%), Positives = 110/112 (98%)
Query: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLASNIGVAKSKI 60
+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ F+IRGLIR+H ASNIGVAKSKI
Sbjct: 1103 LLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHFASNIGVAKSKI 1162
Query: 61 REKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLV 112
REKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLV
Sbjct: 1163 REKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLV 1214
>IMGA|Medtr4g009210.1 DNA-directed RNA polymerase (AHRD V1 *-*-
B5LMM5_CICAR); contains Interpro domain(s) IPR007080
RNA polymerase Rpb1, domain 1
chr04_pseudomolecule_IMGAG_V3.5 1525265-1526238 H
EGN_Mt100125 20100825
Length = 222
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/130 (55%), Positives = 81/130 (62%), Gaps = 34/130 (26%)
Query: 55 VAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCK 114
VAKSK+REKE I+WEIL+EVMQGHP+LLNRA
Sbjct: 108 VAKSKVREKELILWEILKEVMQGHPMLLNRA----------------------------- 138
Query: 115 GFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTS 174
FDGDQM V+V LSLEAQ E+ LLMF MNLLS IGDPI VPTQ + IGLYVLT+
Sbjct: 139 -----FDGDQMIVNVSLSLEAQLESHLLMFIDMNLLSSDIGDPIFVPTQHIFIGLYVLTT 193
Query: 175 GNRRGICANR 184
N R ICAN+
Sbjct: 194 ENHRDICANK 203
>IMGA|Medtr1g016630.1 DNA-directed RNA polymerase (Fragment) (AHRD
V1 *-*- C6FKH5_TRIDU); contains Interpro domain(s)
IPR019385 Phosphorylated adapter RNA export protein,
RNA-binding domain chr01_pseudomolecule_IMGAG_V3.5
4875992-4871287 E EGN_Mt100125 20100825
Length = 326
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/50 (90%), Positives = 48/50 (96%)
Query: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLA 50
+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ F+IRGLIR+H A
Sbjct: 145 LLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHYA 194
>IMGA|Medtr4g061800.1 DNA-directed RNA polymerase subunit beta'
(AHRD V1 **** B1ZPB7); contains Interpro domain(s)
IPR015700 DNA-directed RNA polymerase III largest
subunit chr04_pseudomolecule_IMGAG_V3.5
19294619-19282803 E EGN_Mt100125 20100825
Length = 1036
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 105/217 (48%), Gaps = 27/217 (12%)
Query: 3 GKRVDYSGRSVIVVGPSLSLHRCGLPREIA--------IELFQIFVIRGLIRQH------ 48
GKRV+Y+GR+VI P+L + +P +A + I +R +R
Sbjct: 203 GKRVEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVRNGPDKYPG 262
Query: 49 ---------LASNIGVAKSKIREKEPIVWEILQE-VMQGHPVLLNRAPTLHRLGIQAFQP 98
+ N+ + R E +I++ + G VL NR P+LHR+ + +
Sbjct: 263 ARMVKEAGGNSWNLKILTRTRRADELKFGDIVERHIEDGDVVLFNRQPSLHRMSMMCHRA 322
Query: 99 ILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPI 158
++ R + + VC +NADFDGD+M +HVP + EA+TEA LLM NL +P G+ +
Sbjct: 323 RVMPWRTLRFNESVCNPYNADFDGDEMNIHVPQTEEARTEALLLMTVQNNLCTPKNGEIL 382
Query: 159 SVPTQDMLIGLYVLTSGNRRGICANRALLSSLVAESG 195
TQD L +++T R+ +R+ S + + G
Sbjct: 383 VASTQDFLTSSFLIT---RKDTFYDRSTFSLICSYMG 416
>IMGA|Medtr4g061700.1 DNA-directed RNA polymerase (AHRD V1 ***-
B9GIK9_POPTR); contains Interpro domain(s) IPR015700
DNA-directed RNA polymerase III largest subunit
chr04_pseudomolecule_IMGAG_V3.5 19232789-19222426 E
EGN_Mt100125 20100825
Length = 807
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 107/217 (49%), Gaps = 27/217 (12%)
Query: 3 GKRVDYSGRSVIVVGPSLSLHRCGLPREIA--------IELFQIFVIRGLIRQH------ 48
GKRV+Y+GR+VI P+L + +P +A + I +R +R
Sbjct: 116 GKRVEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVRNGPDKYPG 175
Query: 49 ---------LASNIGVAKSKIREKEPIVWEILQE-VMQGHPVLLNRAPTLHRLGIQAFQP 98
+ N+ V+ R E +I++ + G V+ NR P+LHR+ + + +
Sbjct: 176 ARMLKEAGGNSWNLRVSSRTRRADELKFGDIVERHIEDGDIVIFNRQPSLHRMSMMSHRA 235
Query: 99 ILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPI 158
++ R + + VC +NADFDGD+M +HVP + EA+TEA LLM NL +P G+ +
Sbjct: 236 RVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALLLMTVQNNLCTPKNGEIL 295
Query: 159 SVPTQDMLIGLYVLTSGNRRGICANRALLSSLVAESG 195
TQD L +++T R+ +R+ S + + G
Sbjct: 296 VASTQDFLTSSFLIT---RKDTFYDRSSFSLICSYMG 329
>IMGA|Medtr5g023020.1 DNA-directed RNA polymerase (Fragment) (AHRD
V1 *-*- B7SNX4_PEA); contains Interpro domain(s)
IPR006592 RNA polymerase, N-terminal
chr05_pseudomolecule_IMGAG_V3.5 8873135-8882250 E
EGN_Mt100125 20100825
Length = 1864
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 26/199 (13%)
Query: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIEL--------FQIFVIRGLIRQ--HLA 50
++GKRVD+S R+VI P++++ + G+P IA+ L + I ++ L+ H
Sbjct: 368 LMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP 427
Query: 51 SNIGVAKSKIREKE----------------PIVWEILQEVMQGHPVLLNRAPTLHRLGIQ 94
AK IR+ + +++ + + G VL NR P+LH++ I
Sbjct: 428 PGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIM 487
Query: 95 AFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAI 154
+ ++ L+ V +NADFDGD+M +HVP S E + E LM ++SP
Sbjct: 488 GHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQA 547
Query: 155 GDPISVPTQDMLIGLYVLT 173
P+ QD L+G +T
Sbjct: 548 NRPVMGIVQDSLLGCRKIT 566
>IMGA|Medtr4g086290.1 DNA-directed RNA polymerase subunit beta'
(AHRD V1 *-** B2A4D2); contains Interpro domain(s)
IPR015699 DNA-directed RNA pol I, largest subunit
chr04_pseudomolecule_IMGAG_V3.5 29640857-29624981 E
EGN_Mt100125 20100825
Length = 1628
Score = 80.9 bits (198), Expect = 5e-16, Method: Composition-based stats.
Identities = 67/240 (27%), Positives = 107/240 (44%), Gaps = 45/240 (18%)
Query: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELF------------------------ 36
M+GKRV+Y+ RSVI P L+++ G+P A+ L
Sbjct: 409 MMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNSAKLMDAILNGPDTH 468
Query: 37 ----------------QIFVIRGLIRQHLASNIGVA--KSKIREKEPIVWEILQEVMQGH 78
+ +R + L S+ GV KI E E + + + G
Sbjct: 469 PGAILYTDKTSTLRLQKDKSLRSSTSRRLQSSRGVIMHHGKIHEHEFEGKVVYRHLKDGD 528
Query: 79 PVLLNRAPTLHRLGIQAFQPILVEG-RAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQT 137
VL+NR PTLH+ I A +++G + + +H C +NADFDGD++ VH P ++
Sbjct: 529 VVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRA 588
Query: 138 EARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICA--NRALLSSLVAESG 195
EA ++ ++ + P GDPI QD ++ +LT + C N+ L SS V+ +G
Sbjct: 589 EAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSCQEFNQLLYSSGVSMTG 648
>IMGA|Medtr4g121760.1 DNA-directed RNA polymerase subunit beta'
(AHRD V1 *-*- Q9BBS8); contains Interpro domain(s)
IPR019385 Phosphorylated adapter RNA export protein,
RNA-binding domain chr04_pseudomolecule_IMGAG_V3.5
42005229-42009932 E EGN_Mt100125 20100825
Length = 294
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLASNIGVAKSKI 60
+LGKRVDYSGRSVIVVGPSLSLHRCGLPREI + + + + GV + I
Sbjct: 129 LLGKRVDYSGRSVIVVGPSLSLHRCGLPREIVDAIQSCGGQQTADGKRFRTGGGVLWNII 188
Query: 61 REKEPIVW-EILQEVMQGHPVLLNRAPTLHRLGIQ 94
+ +EP + EI+++ + R P+ + +Q
Sbjct: 189 KVREPNAYKEIMKKAREFEKQF--RQPSFKQPSMQ 221
>IMGA|Medtr3g047940.1 DNA-directed RNA polymerase (AHRD V1 ***-
B5LMM5_CICAR); contains Interpro domain(s) IPR007080
RNA polymerase Rpb1, domain 1
chr03_pseudomolecule_IMGAG_V3.5 14168653-14169114 H
EGN_Mt100125 20100825
Length = 139
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/32 (93%), Positives = 31/32 (96%)
Query: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA 32
+LGKRVDYSGR VIVVGPSLSLHRCGLPREIA
Sbjct: 105 LLGKRVDYSGRFVIVVGPSLSLHRCGLPREIA 136
>IMGA|Medtr8g038990.1 DNA-directed RNA polymerase subunit 1 (AHRD V1
*-*- Q7T6X5); contains Interpro domain(s) IPR006592
RNA polymerase, N-terminal
chr08_pseudomolecule_IMGAG_V3.5 9406643-9388286 E
EGN_Mt100125 20100825
Length = 2032
Score = 60.8 bits (146), Expect = 5e-10, Method: Composition-based stats.
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 22/184 (11%)
Query: 8 YSGRSVIVVGPSLSLHRCGLPREIA--------IELFQIFVIRGLIRQHLASNI--GVAK 57
+S R+VI ++ G+P E+A + + I ++ L+ ++L G++
Sbjct: 408 FSSRNVITGDGYKKINEVGIPLEVAQRITFEERVSIHNIHYLQKLVDENLCLTYKEGMST 467
Query: 58 SKIREKEP---------IVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL 108
+RE IV + +M G V +NR PT H+ +QA + + + +
Sbjct: 468 YSLREGSKGHTYLKPGQIVH---RRIMDGDTVFINRPPTTHKHSLQALVVYIHDDHTVKI 524
Query: 109 HPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPISVPTQDMLIG 168
+PL+C ADFDGD + + P SL A+ E L LLS G+ + D L+
Sbjct: 525 NPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLSADSLLS 584
Query: 169 LYVL 172
L +L
Sbjct: 585 LKML 588
>IMGA|Medtr5g011000.1 DNA-directed RNA polymerase subunit beta'
(AHRD V1 *-*- Q2S1Q6); contains Interpro domain(s)
IPR000722 RNA polymerase, alpha subunit
chr05_pseudomolecule_IMGAG_V3.5 2817561-2832078 E
EGN_Mt100125 20100825
Length = 1687
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 17/189 (8%)
Query: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLASNIGV---AK 57
+LGKR D + R+V+V P L L G+P +IA L + RQ+L + K
Sbjct: 478 VLGKRNDCTFRTVVVGDPDLELSEIGIPCQIAEALQVSEYVNRQNRQNLLYCCELRLLEK 537
Query: 58 SKI---REKEPIVW---EILQ-------EVMQGHPVLLNRAPTLHRLGIQAFQ-PILVEG 103
+I R P+V E LQ ++ G VL+NR P++H+ + A +L
Sbjct: 538 GQINVRRNGNPVVLYKKEDLQIGDIFYRPLVDGDKVLINRPPSIHQHSMIALTVRVLPIS 597
Query: 104 RAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPISVPTQ 163
+ ++P+ C DFDGD + ++P S+ A+ E L+ L++ G + +Q
Sbjct: 598 SVVSINPICCSPLRGDFDGDCLHGYIPQSVGARVELNELVALDRQLINGQSGGNLLSLSQ 657
Query: 164 DMLIGLYVL 172
D L ++L
Sbjct: 658 DSLTAAHLL 666