Jatropha Genome Database

Jcr4S02936.20
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S02936.20
         (195 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017094001 assembled CDS                                       123   6e-29
GSVIVT01025079001 assembled CDS                                        96   9e-21
GSVIVT01008740001 assembled CDS                                        83   9e-17
GSVIVT01033327001 assembled CDS                                        77   4e-15
GSVIVT01005195001 assembled CDS                                        62   2e-10
GSVIVT01013491001 assembled CDS                                        60   9e-10
GSVIVT01019869001 assembled CDS                                        58   2e-09
GSVIVT01016331001 assembled CDS                                        49   2e-06

>GSVIVT01017094001 assembled CDS
          Length = 510

 Score =  123 bits (308), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 57/66 (86%), Positives = 61/66 (92%)

Query: 108 LHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPISVPTQDMLI 167
           ++ L   GFNADFDGDQM VHVPLSLEAQ+EARLLMFSHMNLLSPAIGDPIS+PTQDMLI
Sbjct: 31  VYKLFSDGFNADFDGDQMVVHVPLSLEAQSEARLLMFSHMNLLSPAIGDPISIPTQDMLI 90

Query: 168 GLYVLT 173
           GLYVLT
Sbjct: 91  GLYVLT 96


>GSVIVT01025079001 assembled CDS
          Length = 1819

 Score = 96.3 bits (238), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 108/217 (49%), Gaps = 27/217 (12%)

Query: 3   GKRVDYSGRSVIVVGPSLSLHRCGLPREIA-------------IELFQIFVIRG------ 43
           GKRV+Y+GR+VI   P+L +    +P  +A             IE  +  ++ G      
Sbjct: 357 GKRVEYTGRTVISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPG 416

Query: 44  --LIRQ---HLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQP 98
             LIR     + S +   + +  ++    + + + +  G  VL NR P+LHR+ I   + 
Sbjct: 417 AKLIRYPDGSMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRA 476

Query: 99  ILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPI 158
            ++  R +  +  VC  +NADFDGD+M +HVP + EA+TEA +LM    NL +P  G+ +
Sbjct: 477 RIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEIL 536

Query: 159 SVPTQDMLIGLYVLTSGNRRGICANRALLSSLVAESG 195
              TQD L   +++T   R+    +RA  S + +  G
Sbjct: 537 VASTQDFLTSSFLIT---RKDTFYDRAAFSLMCSYMG 570


>GSVIVT01008740001 assembled CDS
          Length = 1565

 Score = 82.8 bits (203), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 94/199 (47%), Gaps = 26/199 (13%)

Query: 1   MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIEL--------FQIFVIRGLIRQ--HLA 50
           ++GKRVD+S R+VI   P++++   G+P  IA+ L        + I  ++ L+    H  
Sbjct: 398 LMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP 457

Query: 51  SNIGVAKSKIREKE----------------PIVWEILQEVMQGHPVLLNRAPTLHRLGIQ 94
                AK  IRE                   + +++ + +  G  VL NR P+LH++ I 
Sbjct: 458 PGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIM 517

Query: 95  AFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAI 154
             +  ++      L+  V   +NADFDGD+M +HVP S E + E   LM     ++SP  
Sbjct: 518 GHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQS 577

Query: 155 GDPISVPTQDMLIGLYVLT 173
             P+    QD L+G   +T
Sbjct: 578 NRPVMGIVQDTLLGCRKIT 596


>GSVIVT01033327001 assembled CDS
          Length = 1669

 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 49/222 (22%)

Query: 1   MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIEL--------FQIFVIRGLI------- 45
           M+GKRV+++ RSVI   P L+++  G+P   A+ L        + +  +R  I       
Sbjct: 437 MMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIH 496

Query: 46  --RQHLASNIGVAKSKIREK-----------------EP-----------IVWEILQEVM 75
               H    +   K  + +K                 +P           IV+  LQ+  
Sbjct: 497 PGATHYVDKLSTVKLAVNKKMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQD-- 554

Query: 76  QGHPVLLNRAPTLHRLGIQAFQPILVEG-RAICLHPLVCKGFNADFDGDQMAVHVPLSLE 134
            G  VL+NR PTLH+  I A    +++G + + +H   C  +NADFDGD+M VH P    
Sbjct: 555 -GDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEI 613

Query: 135 AQTEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGN 176
           ++ EA  ++ ++   + P+ GDPI    QD ++   +LT  +
Sbjct: 614 SRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKD 655


>GSVIVT01005195001 assembled CDS
          Length = 1607

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 50/98 (51%)

Query: 76  QGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEA 135
            G  VL NR P+LH++     +  ++      L+  V   +NADFDGD+M +HVP S E 
Sbjct: 182 DGDYVLFNRQPSLHKMSFMGHRINIMPYSTFRLNLSVASPYNADFDGDEMNMHVPQSFET 241

Query: 136 QTEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLT 173
           + E   LM     ++SP    P+    QD L+G   +T
Sbjct: 242 RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKIT 279


>GSVIVT01013491001 assembled CDS
          Length = 1890

 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 20/183 (10%)

Query: 8   YSGRSVIVVGPSLSLHRCGLPREIA--------IELFQIFVIRGLIRQHL--ASNIGVAK 57
           +S RSVI       ++  GLP EIA        + +  +  ++ L+ + L      G++ 
Sbjct: 382 FSSRSVITGDAYKRVNEIGLPFEIAQRITFEERVNVHNMKHLQNLVDEKLCLTYRDGLST 441

Query: 58  SKIRE--------KEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLH 109
             +RE        +   V  + + +M G  V +NR PT H+  +QA    + +   + ++
Sbjct: 442 YSLREGSKGHTFLRPGQV--VHRRIMDGDIVFINRPPTTHKHSLQALSVYVHDDHTVKIN 499

Query: 110 PLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPISVPTQDMLIGL 169
           PL+C   +ADFDGD + +  P SL A+ E   L      LLS   G+       D L+ L
Sbjct: 500 PLICGPLSADFDGDCVHLFYPQSLGAKAEVLELFSVEKQLLSSHSGNLNLQLATDSLLSL 559

Query: 170 YVL 172
            VL
Sbjct: 560 KVL 562


>GSVIVT01019869001 assembled CDS
          Length = 1359

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 33/163 (20%)

Query: 1   MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLAS--------- 51
           +LGKR ++S R ++V  P L L   G+P  IA EL        LI +HL S         
Sbjct: 290 LLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEEL--------LISEHLNSWNWEKVTNG 341

Query: 52  -NIGV---AKSKIREKEPIVWE-----------ILQEVMQGHPVLLNRAPTLHRLGIQAF 96
            N+ +    ++ +R K  +              I + +  G  VL+NR P++H+  + A 
Sbjct: 342 CNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIAL 401

Query: 97  Q-PILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTE 138
              +L     + ++PL C  F  DFDGD +  ++P S++++ E
Sbjct: 402 SVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVE 444


>GSVIVT01016331001 assembled CDS
          Length = 81

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 25/28 (89%)

Query: 117 NADFDGDQMAVHVPLSLEAQTEARLLMF 144
           + DFDGDQ+ +HVP SLEAQ++ARLLMF
Sbjct: 52  HVDFDGDQIVIHVPSSLEAQSKARLLMF 79