Jatropha Genome Database

Jcr4S02936.20
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S02936.20
         (195 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

51325.m000005 DNA-directed RNA polymerase beta chain, putative        354   1e-98
30185.m000926 DNA-directed RNA polymerase beta chain, putative        252   8e-68
30195.m000308 DNA-directed RNA polymerase beta chain, putative        129   7e-31
30130.m000272 DNA-directed RNA polymerase III largest subunit, p...    98   2e-21
29784.m000366 DNA-directed RNA polymerase II largest subunit, pu...    82   1e-16
27810.m000650 DNA-directed RNA polymerase I largest subunit, put...    70   6e-13
30131.m007197 DNA-directed RNA polymerase, putative                    63   9e-11
30190.m011113 DNA-directed RNA polymerase, putative                    58   2e-09

>51325.m000005 DNA-directed RNA polymerase beta chain, putative
          Length = 178

 Score =  354 bits (908), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 174/178 (97%), Positives = 175/178 (98%)

Query: 1   MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLASNIGVAKSKI 60
           MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLASNIGVAKSKI
Sbjct: 1   MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLASNIGVAKSKI 60

Query: 61  REKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF 120
           REKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVE RAICLHPLVCKGFNADF
Sbjct: 61  REKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVESRAICLHPLVCKGFNADF 120

Query: 121 DGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRR 178
           DGDQMAVHVPLSLEAQ +ARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTS NRR
Sbjct: 121 DGDQMAVHVPLSLEAQAKARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSRNRR 178


>30185.m000926 DNA-directed RNA polymerase beta chain, putative
          Length = 349

 Score =  252 bits (643), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 122/135 (90%), Positives = 128/135 (94%)

Query: 1   MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLASNIGVAKSKI 60
           MLGKRVDYSGRSVI+VGPS+SLHRCGLPREIAIELFQIFVI GLIRQHLASNIGVAKSKI
Sbjct: 1   MLGKRVDYSGRSVIIVGPSISLHRCGLPREIAIELFQIFVICGLIRQHLASNIGVAKSKI 60

Query: 61  REKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF 120
           REKEPIVWEILQEVMQGHPVLLNRA TLHRLGIQAFQPILVEGRAICLHPLV KGFNADF
Sbjct: 61  REKEPIVWEILQEVMQGHPVLLNRALTLHRLGIQAFQPILVEGRAICLHPLVYKGFNADF 120

Query: 121 DGDQMAVHVPLSLEA 135
            GDQM VH  ++L++
Sbjct: 121 GGDQMVVHKRINLDS 135


>30195.m000308 DNA-directed RNA polymerase beta chain, putative
          Length = 69

 Score =  129 bits (325), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 61/69 (88%), Positives = 64/69 (92%)

Query: 75  MQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 134
           MQGH VLLNR PTLHRLGI+AFQPILVEGR ICLHPLVCKGFNADF+GDQM VHVPLSLE
Sbjct: 1   MQGHSVLLNRMPTLHRLGIRAFQPILVEGRTICLHPLVCKGFNADFNGDQMVVHVPLSLE 60

Query: 135 AQTEARLLM 143
           AQ EARLL+
Sbjct: 61  AQMEARLLI 69


>30130.m000272 DNA-directed RNA polymerase III largest subunit,
           putative
          Length = 1383

 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 103/211 (48%), Gaps = 28/211 (13%)

Query: 3   GKRVDYSGRSVIVVGPSLSLHRCGLPREIA-------------IELFQIFVIRGLIRQHL 49
           GKRV+++GR+VI   P+L +    +P  +A             IE  +  V  G  +   
Sbjct: 330 GKRVEFTGRTVISPDPNLKITEVAIPIHMARILSYPERVSHHNIEKLRQLVSNGPQKYPG 389

Query: 50  ASN-----------IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQP 98
           AS            IG  +  I E+      + + +  G  VL NR P+LHR+ I   + 
Sbjct: 390 ASTVRYPDGSSKRLIGSYRKTIAEELTFGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRA 449

Query: 99  ILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLM-FSHMNLLSPAIGDP 157
            ++  R +  +  VC  +NADFDGD+M +HVP + EA+TEA LLM  S  NL +P  G+ 
Sbjct: 450 RIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVSQNNLCTPKNGEI 509

Query: 158 ISVPTQDMLIGLYVLTSGNRRGICANRALLS 188
           +   TQD L   +++T   RR    +RA  S
Sbjct: 510 LVASTQDFLTSSFLIT---RRDTFYDRAAFS 537


>29784.m000366 DNA-directed RNA polymerase II largest subunit,
           putative
          Length = 1855

 Score = 82.0 bits (201), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 26/199 (13%)

Query: 1   MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIEL--------FQIFVIRGLIR--QHLA 50
           ++GKRVD+S R+VI   P++++ + G+P  IA+ L        + I  ++ L+    H  
Sbjct: 350 LMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP 409

Query: 51  SNIGVAKSKIREKE----------------PIVWEILQEVMQGHPVLLNRAPTLHRLGIQ 94
                AK  IR+                   + +++ + +  G  VL NR P+LH++ I 
Sbjct: 410 PGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIM 469

Query: 95  AFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAI 154
             +  ++      L+  V   +NADFDGD+M +HVP S E + E   LM     ++SP  
Sbjct: 470 GHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQS 529

Query: 155 GDPISVPTQDMLIGLYVLT 173
             P+    QD L+G   +T
Sbjct: 530 NRPVMGIVQDTLLGCRKIT 548


>27810.m000650 DNA-directed RNA polymerase I largest subunit,
           putative
          Length = 1686

 Score = 70.1 bits (170), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 101/223 (45%), Gaps = 50/223 (22%)

Query: 1   MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIEL--------FQIFVIRGLI------- 45
           M+GKRV+Y+ RSVI   P + ++  G+P   A++L        + I  +R  +       
Sbjct: 436 MMGKRVNYACRSVISPDPYIGVNEIGIPPCFAVKLTYPERVTPWNIAKLRNAVINGSECH 495

Query: 46  --RQHLASNIGV--------AKSKIREKEP--------------------IVWEILQEVM 75
               H    + +        A+  I  K P                    IV+  LQ+  
Sbjct: 496 PGATHYVDKLSINKLPPARKARISISRKLPSSRGAVTQAGKGSECEFEGKIVYRHLQD-- 553

Query: 76  QGHPVLLNRAPTLHRLGIQAFQPILVEG-RAICLHPLVCK-GFNADFDGDQMAVHVPLSL 133
            G  VL+NR PTLH+  I A    +++G + + +H   C   +NADFDGD+M VH P   
Sbjct: 554 -GDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSITYNADFDGDEMNVHFPQDE 612

Query: 134 EAQTEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGN 176
            ++ EA  ++ ++   + P+ G+P+    QD ++   +LT  +
Sbjct: 613 VSRAEAYNIVNANNQFVRPSNGEPLRGLIQDHIVSAVLLTKKD 655


>30131.m007197 DNA-directed RNA polymerase, putative
          Length = 991

 Score = 62.8 bits (151), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 16/181 (8%)

Query: 8   YSGRSVIVVGPSLSLHRCGLPREIA--------IELFQIFVIRGLIRQHLASNI--GVAK 57
           +S RSVI       ++  G+P EIA        +    +  ++ L+   L      G + 
Sbjct: 324 FSSRSVITGDAYKCVNEIGIPSEIAQRITFEERVNAHNMQYLQELVDNKLCLTYRDGSST 383

Query: 58  SKIREKEP------IVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPL 111
             +RE         +   + + +M G  V +NR PT H+  +QA    + +G  + ++PL
Sbjct: 384 YSLREGSKGHTFLRLGQIVHRRIMDGDMVFINRPPTTHKHSLQALSVYVHDGHTVKINPL 443

Query: 112 VCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYV 171
           +C   +ADFDGD + +  P SL A+ E   L      LLS   G+     T D L+ L  
Sbjct: 444 ICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLTSDSLLSLKT 503

Query: 172 L 172
           +
Sbjct: 504 M 504


>30190.m011113 DNA-directed RNA polymerase, putative
          Length = 1475

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 93/191 (48%), Gaps = 21/191 (10%)

Query: 1   MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQI---------------FVIRGLI 45
           +LGKR D S R V+V  P++     G+P  IA E  QI                 +R L 
Sbjct: 320 VLGKRNDNSFRMVVVGDPNIKFSEIGIPCPIA-ERLQISEHLTTWNWDKLNTCCEVRLLE 378

Query: 46  R--QHLASNIGVAKSKIREKEPIVWEIL-QEVMQGHPVLLNRAPTLHRLGIQAFQ-PILV 101
           +   H+     + + + R KE  + +I+ + +  G  VL+NR P++H+  + A    +L 
Sbjct: 379 KGDMHVRREGKLVRVR-RTKELRIGDIIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLP 437

Query: 102 EGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPISVP 161
               + ++PL+C  F  DFDGD +  +VP S++ + E R L+     L++   G  +   
Sbjct: 438 ATSVLAINPLICAPFRGDFDGDCLHGYVPQSVDTRVELRELVALDKQLINVQNGRNLLSF 497

Query: 162 TQDMLIGLYVL 172
           +QD L+  +++
Sbjct: 498 SQDSLVAAHLV 508