Jatropha Genome Database
- Jcr4S02936.20
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jcr4S02936.20
(588 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
51325.m000005 DNA-directed RNA polymerase beta chain, putative 902 0.0
30185.m000926 DNA-directed RNA polymerase beta chain, putative 587 e-167
30195.m000308 DNA-directed RNA polymerase beta chain, putative 289 9e-78
>51325.m000005 DNA-directed RNA polymerase beta chain, putative
Length = 535
Score = 902 bits (455), Expect = 0.0
Identities = 515/535 (96%)
Strand = Plus / Plus
Query: 1 atgcttggcaaacgggttgattattcggggcgttctgtcattgtcgtaggcccctcactt 60
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 atgcttggaaaacgggttgattattcggggcgttctgtcattgtcgttggcccctcactt 60
Query: 61 tcattacatcgatgtggattgcctcgcgaaatagcaatagagcttttccagatatttgta 120
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 61 tcattacatcgatgtggattgcctcgcgaaatagcaatagaactttttcagatatttgta 120
Query: 121 attcgtggtctaattaggcaacatcttgcttcgaacataggagttgctaagagtaaaatt 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attcgtggtctaattagacaacatcttgcttcgaacataggagttgctaagagtaaaatt 180
Query: 181 cgggaaaaagaaccaattgtatgggaaatacttcaagaagttatgcagggacatccggta 240
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 181 cgggaaaaagagccaattgtatgggaaatacttcaggaagttatgcaggggcatccggta 240
Query: 241 ttactgaatagagcgccgactctgcatagattaggcatacaggcgttccaacccatttta 300
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 241 ttactgaatagagcgccgactttgcatagattaggcatacaggcattccaacccatttta 300
Query: 301 gtggaaggccgtgctatttgtttacatccattggtttgtaagggattcaatgcagacttt 360
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 301 gtggaaagccgtgctatttgtttacatccattagtttgtaagggattcaatgcagacttt 360
Query: 361 gatggggatcaaatggctgttcatgtacctttatcgttggaggctcaaacagaggctcgt 420
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 361 gatggggatcaaatggctgttcatgtacctttatcgttggaggctcaagcgaaggctcgt 420
Query: 421 ttacttatgttttctcatatgaatctcttgtctccagctattggagatcccatctccgta 480
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 421 ttacttatgttttctcatatgaatctcttatctccagctattggagatcctatttccgta 480
Query: 481 ccaactcaagatatgcttattgggctctatgtattaacaagcgggaatcgtcgag 535
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 481 ccaactcaagatatgcttattgggctctatgtattaacaagcaggaatcgccgag 535
>30185.m000926 DNA-directed RNA polymerase beta chain, putative
Length = 1050
Score = 587 bits (296), Expect = e-167
Identities = 362/384 (94%)
Strand = Plus / Plus
Query: 1 atgcttggcaaacgggttgattattcggggcgttctgtcattgtcgtaggcccctcactt 60
|||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 1 atgcttggaaaacgagttgattattcggggcgttctgtcattatcgtaggcccctcaatt 60
Query: 61 tcattacatcgatgtggattgcctcgcgaaatagcaatagagcttttccagatatttgta 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 61 tcattacatcgatgtggattgcctcgcgaaatagcaatagaacttttccagatatttgta 120
Query: 121 attcgtggtctaattaggcaacatcttgcttcgaacataggagttgctaagagtaaaatt 180
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atttgtggtctaattagacaacatcttgcttcgaacataggagttgctaagagtaaaatt 180
Query: 181 cgggaaaaagaaccaattgtatgggaaatacttcaagaagttatgcagggacatccggta 240
|| |||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct: 181 cgagaaaaagagccaattgtatgggaaatacttcaggaagttatgcaggggcatcctgta 240
Query: 241 ttactgaatagagcgccgactctgcatagattaggcatacaggcgttccaacccatttta 300
||||| |||||||| | |||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 241 ttactaaatagagcactgactttgcatagattaggcatacaggcattccaacccatttta 300
Query: 301 gtggaaggccgtgctatttgtttacatccattggtttgtaagggattcaatgcagacttt 360
||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 301 gtggaaggccgcgctatttgtttacatccattagtttataagggattcaatgcagacttt 360
Query: 361 gatggggatcaaatggctgttcat 384
| |||||||||||||| |||||||
Sbjct: 361 ggtggggatcaaatggttgttcat 384
>30195.m000308 DNA-directed RNA polymerase beta chain, putative
Length = 210
Score = 289 bits (146), Expect = 9e-78
Identities = 191/206 (92%)
Strand = Plus / Plus
Query: 223 atgcagggacatccggtattactgaatagagcgccgactctgcatagattaggcatacag 282
|||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| |
Sbjct: 1 atgcagggacattcggtattactgaatagaatgccgactttgcatagattaggcatacgg 60
Query: 283 gcgttccaacccattttagtggaaggccgtgctatttgtttacatccattggtttgtaag 342
|| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 61 gcattccaacccattttagtggaaggccgcactatttgtttacatccattagtttgtaag 120
Query: 343 ggattcaatgcagactttgatggggatcaaatggctgttcatgtacctttatcgttggag 402
||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 121 ggatttaatgcagactttaatggggatcaaatggtcgttcatgtacctttatcgttggag 180
Query: 403 gctcaaacagaggctcgtttacttat 428
||||||| |||||||||||||||||
Sbjct: 181 gctcaaatggaggctcgtttacttat 206