Jatropha Genome Database
- Jcr4S02936.20
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Jcr4S02936.20
(195 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATCG00180.1 | Symbols: RPOC1 | DNA-directed RNA polymerase famil... 365 e-102
AT5G60040.1 | Symbols: NRPC1 | nuclear RNA polymerase C1 | chr5:... 99 2e-21
AT5G60040.2 | Symbols: NRPC1 | nuclear RNA polymerase C1 | chr5:... 99 2e-21
AT4G35800.1 | Symbols: NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, ... 82 2e-16
AT1G63020.2 | Symbols: NRPD1A | nuclear RNA polymerase D1A | chr... 72 3e-13
AT1G63020.1 | Symbols: NRPD1A, POL IVA, SDE4, NRPD1, SMD2 | nucl... 72 3e-13
AT3G57660.1 | Symbols: NRPA1 | nuclear RNA polymerase A1 | chr3:... 69 2e-12
AT2G40030.1 | Symbols: NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | nuc... 65 4e-11
>ATCG00180.1 | Symbols: RPOC1 | DNA-directed RNA polymerase family
protein | chrC:20251-23084 REVERSE LENGTH=680
Length = 680
Score = 365 bits (937), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/184 (95%), Positives = 180/184 (97%)
Query: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLASNIGVAKSKI 60
+LGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQ FVIRGLIRQHLASNIGVAKS+I
Sbjct: 371 LLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSQI 430
Query: 61 REKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF 120
REK+PIVWEILQEVMQGHPVLLNRAPTLHRLGIQ+FQPILVEGR ICLHPLVCKGFNADF
Sbjct: 431 REKKPIVWEILQEVMQGHPVLLNRAPTLHRLGIQSFQPILVEGRTICLHPLVCKGFNADF 490
Query: 121 DGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGI 180
DGDQMAVHVPLSLEAQ EARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSG RRGI
Sbjct: 491 DGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGI 550
Query: 181 CANR 184
CANR
Sbjct: 551 CANR 554
>AT5G60040.1 | Symbols: NRPC1 | nuclear RNA polymerase C1 |
chr5:24173590-24183269 FORWARD LENGTH=1376
Length = 1376
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 108/217 (49%), Gaps = 27/217 (12%)
Query: 3 GKRVDYSGRSVIVVGPSLSLHRCGLPREIA-------------IELFQIFVIRGLIRQHL 49
GKRV+++GR+VI P+L + G+P +A IE + V G +
Sbjct: 359 GKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPG 418
Query: 50 ASN-----------IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQP 98
A N +G + +I ++ I + + + +G VL NR P+LHR+ I +
Sbjct: 419 ARNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRA 478
Query: 99 ILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPI 158
++ R + + VC +NADFDGD+M +HVP + EA+TEA LM NL +P G+ +
Sbjct: 479 RIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEIL 538
Query: 159 SVPTQDMLIGLYVLTSGNRRGICANRALLSSLVAESG 195
TQD L +++T R+ +RA S + + G
Sbjct: 539 VASTQDFLTSSFLIT---RKDTFYDRAAFSLICSYMG 572
>AT5G60040.2 | Symbols: NRPC1 | nuclear RNA polymerase C1 |
chr5:24173590-24183269 FORWARD LENGTH=1391
Length = 1391
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 108/217 (49%), Gaps = 27/217 (12%)
Query: 3 GKRVDYSGRSVIVVGPSLSLHRCGLPREIA-------------IELFQIFVIRGLIRQHL 49
GKRV+++GR+VI P+L + G+P +A IE + V G +
Sbjct: 369 GKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPG 428
Query: 50 ASN-----------IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQP 98
A N +G + +I ++ I + + + +G VL NR P+LHR+ I +
Sbjct: 429 ARNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRA 488
Query: 99 ILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPI 158
++ R + + VC +NADFDGD+M +HVP + EA+TEA LM NL +P G+ +
Sbjct: 489 RIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEIL 548
Query: 159 SVPTQDMLIGLYVLTSGNRRGICANRALLSSLVAESG 195
TQD L +++T R+ +RA S + + G
Sbjct: 549 VASTQDFLTSSFLIT---RKDTFYDRAAFSLICSYMG 582
>AT4G35800.1 | Symbols: NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS,
RNA_POL_II_LS | RNA polymerase II large subunit |
chr4:16961115-16967892 REVERSE LENGTH=1839
Length = 1839
Score = 82.4 bits (202), Expect = 2e-16, Method: Composition-based stats.
Identities = 57/199 (28%), Positives = 94/199 (47%), Gaps = 26/199 (13%)
Query: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIEL--------FQIFVIRGLIR--QHLA 50
++GKRVD+S R+VI P++++ G+P IA+ L + I ++ L+ H
Sbjct: 351 LMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPP 410
Query: 51 SNIGVAKSKIREKE----------------PIVWEILQEVMQGHPVLLNRAPTLHRLGIQ 94
AK IR+ + +++ + + G VL NR P+LH++ I
Sbjct: 411 PGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIM 470
Query: 95 AFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAI 154
+ ++ L+ V +NADFDGD+M +HVP S E + E LM ++SP
Sbjct: 471 GHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQA 530
Query: 155 GDPISVPTQDMLIGLYVLT 173
P+ QD L+G +T
Sbjct: 531 NRPVMGIVQDTLLGCRKIT 549
>AT1G63020.2 | Symbols: NRPD1A | nuclear RNA polymerase D1A |
chr1:23355329-23361126 REVERSE LENGTH=1453
Length = 1453
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 18/206 (8%)
Query: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLASN-----IGV 55
+LGKR D++ R+V+V PSL L+ G+P IA L + ++ L ++ +
Sbjct: 313 LLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKERLVTSFVPTLLDN 372
Query: 56 AKSKIREKEPIVW----------EILQEVMQGHPVLLNRAPTLHRLGIQAFQ-PILVEGR 104
+ +R + +V +I + +M G VL+NR P++H+ + A IL
Sbjct: 373 KEMHVRRGDRLVAIQVNDLQTGDKIFRSLMDGDTVLMNRPPSIHQHSLIAMTVRILPTTS 432
Query: 105 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPISVPTQD 164
+ L+P+ C F DFDGD + +VP S++A+ E L+ L++ G + QD
Sbjct: 433 VVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDELVALDKQLINRQNGRNLLSLGQD 492
Query: 165 MLIGLYVLTSGNRRGICANRALLSSL 190
L Y++ + NRA + L
Sbjct: 493 SLTAAYLVNV--EKNCYLNRAQMQQL 516
>AT1G63020.1 | Symbols: NRPD1A, POL IVA, SDE4, NRPD1, SMD2 | nuclear
RNA polymerase D1A | chr1:23355329-23361126 REVERSE
LENGTH=1453
Length = 1453
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 18/206 (8%)
Query: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLASN-----IGV 55
+LGKR D++ R+V+V PSL L+ G+P IA L + ++ L ++ +
Sbjct: 313 LLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKERLVTSFVPTLLDN 372
Query: 56 AKSKIREKEPIVW----------EILQEVMQGHPVLLNRAPTLHRLGIQAFQ-PILVEGR 104
+ +R + +V +I + +M G VL+NR P++H+ + A IL
Sbjct: 373 KEMHVRRGDRLVAIQVNDLQTGDKIFRSLMDGDTVLMNRPPSIHQHSLIAMTVRILPTTS 432
Query: 105 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPISVPTQD 164
+ L+P+ C F DFDGD + +VP S++A+ E L+ L++ G + QD
Sbjct: 433 VVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDELVALDKQLINRQNGRNLLSLGQD 492
Query: 165 MLIGLYVLTSGNRRGICANRALLSSL 190
L Y++ + NRA + L
Sbjct: 493 SLTAAYLVNV--EKNCYLNRAQMQQL 516
>AT3G57660.1 | Symbols: NRPA1 | nuclear RNA polymerase A1 |
chr3:21353746-21362814 FORWARD LENGTH=1670
Length = 1670
Score = 69.3 bits (168), Expect = 2e-12, Method: Composition-based stats.
Identities = 61/239 (25%), Positives = 112/239 (46%), Gaps = 48/239 (20%)
Query: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIEL-------------FQIFVIRG---- 43
M+GKRV+++ RSVI P ++++ G+P A++L + +I G
Sbjct: 441 MMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIH 500
Query: 44 -----------------------LIRQHLASNIGVAKSKIREKEPIVWE---ILQEVMQG 77
I + L S+ G A +++ + I +E + + + G
Sbjct: 501 PGATHYSDKSSTMKLPSTEKARRAIARKLLSSRG-ATTELGKTCDINFEGKTVHRHMRDG 559
Query: 78 HPVLLNRAPTLHRLGIQAFQPILVEG-RAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQ 136
VL+NR PTLH+ + A + +++G + + LH C +NADFDGD+M VH P ++
Sbjct: 560 DIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISR 619
Query: 137 TEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRALLSSLVAESG 195
EA ++ ++ P+ G+P+ QD ++ +LT +R ++ + L+ SG
Sbjct: 620 AEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLT---KRDTFLDKDHFNQLLFSSG 675
>AT2G40030.1 | Symbols: NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 |
nuclear RNA polymerase D1B | chr2:16715089-16723406
FORWARD LENGTH=1976
Length = 1976
Score = 64.7 bits (156), Expect = 4e-11, Method: Composition-based stats.
Identities = 36/101 (35%), Positives = 52/101 (51%)
Query: 72 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 131
+ VM G V +NR PT H+ +QA + + E + ++PL+C +ADFDGD + + P
Sbjct: 402 RRVMDGDVVFINRPPTTHKHSLQALRVYVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQ 461
Query: 132 SLEAQTEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVL 172
SL A+ E L LLS G I D L+ L V+
Sbjct: 462 SLSAKAEVMELFSVEKQLLSSHTGQLILQMGSDSLLSLRVM 502