Gene/Protein Characteristic Table for KIAA1904
Order Kazusa clone(s) from : Japan || Other countries
Product ID ORK00946
Accession No AB067491
Description extracellular leucine-rich repeat and fibronectin type III domain containing 2, transcript variant 1
Clone name af00058
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (7579 bp)
Predicted protein sequence (821 aa)
Flexi ORF Clone FXC00946
Source Human brain (amygdala)
Rouge ID mKIAA1904 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 7579 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 5111 bp
Genome contig ID gi89161203r_35993947
PolyA signal sequence
(AATAAA,-22)
+----*----+----*----+----*----+----
TTTCTATATTTGCAATAAATTTCTTATTTAAAGCT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ACGGGGCCATGGTCTATGCTGTATTCCTCCCACATTGCACTGCCATGACG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 22 r 36093947 36101525 1 99.0 Perfect prediction
Features of the protein sequence
Description

Length: 821 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAG10177 0 100.0 leucine-rich re...
synthetic construct
Q5R3F8 0 99.8 Leucine-rich re...
Homo sapiens
XP_001086834 0 98.9 similar to slit...
Macaca mulatta
XP_001500931 0 97.0 extracellular l...
Equus caballus
Q68FM6 0 95.4 Leucine-rich re...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB011537 4.1e-09 26.0 KIAA0813
AB040898 4.1e-09 27.1 KIAA1465
AB011538 1.2e-08 33.3 KIAA0814
AB018349 3.4e-08 31.4 KIAA0806
D86983 1.8e-07 26.9 KIAA0230
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR001611 106 119 PR00019 Leucine-rich repeat
IPR001611 151 164 PR00019 Leucine-rich repeat
HMMPfam IPR001611 81 103 PF00560 Leucine-rich repeat
IPR001611 105 127 PF00560 Leucine-rich repeat
IPR001611 153 175 PF00560 Leucine-rich repeat
HMMSmart IPR003591 79 102 SM00369 Leucine-rich repeat
IPR003591 104 126 SM00369 Leucine-rich repeat
IPR003591 127 150 SM00369 Leucine-rich repeat
IPR003591 151 174 SM00369 Leucine-rich repeat
ProfileScan IPR001899 389 430 PS50847 Surface protein from Gram-positive cocci

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 3 LRLGLCAAALLCVCRPGAVRADC 25 PRIMARY 23
2 397 HYIMTILGCLFGMVIVLGAVYYC 419 PRIMARY 23
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f ACGCCTCTACTAGCAGCTTTG
Primer_r ATGGCACTAGCTTTCCTGGTC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 22
Experimental conditions
Panel name genbank
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
Order Kazusa clone(s) from : Japan || Other countries
Back to the HUGE Protein Database homepage
Send a message to office AT kazusa.or.jp