hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16074063/chunk_1/iprscan-20080502-16074063.nocrc
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Query sequence: KIAA1904
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00369                                                  56.7    2.9e-12   4

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00369     1/4      79   102 ..     1    24 []    18.2      1.1
SM00369     2/4     104   126 ..     1    24 []    13.6      9.2
SM00369     3/4     127   150 ..     1    24 []    14.0      8.1
SM00369     4/4     151   174 ..     1    24 []    10.9       19

Alignments of top-scoring domains:
SM00369: domain 1 of 4, from 79 to 102: score 18.2, E = 1.1
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                       +nL+ L+L  N ++ + +gaF g   
    KIAA1904    79    FGNLTDLNLTKNEISYIEDGAFLG    102  

SM00369: domain 2 of 4, from 104 to 126: score 13.6, E = 9.2
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                       ++L++L L++N+L+ L +g+++g   
    KIAA1904   104    -SSLQVLQLGYNKLSNLTEGMLRG    126  

SM00369: domain 3 of 4, from 127 to 150: score 14.0, E = 8.1
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      ++ L+ L  ++N ++ + p aF+    
    KIAA1904   127    MSRLQFLFVQHNLIEVVTPTAFSE    150  

SM00369: domain 4 of 4, from 151 to 174: score 10.9, E = 19
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                       p+L + dLs+N+L++L   +F++   
    KIAA1904   151    CPSLISIDLSSNRLSRLDGATFAS    174  

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