Gene/Protein Characteristic Table for KIAA1465
Order Kazusa clone(s) from : Japan || Other countries
Product ID ORK00844
Accession No AB040898
Description immunoglobulin superfamily containing leucine-rich repeat 2, transcript variant 2
Clone name fh13187
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4815 bp)
Predicted protein sequence (785 aa)
Flexi ORF Clone FXC00844
Source Human fetal brain
Rouge ID mKIAA1465 by Kazusa Mouse cDNA Project
Note We replaced fj00601, former representative clones for KIAA1465 with fh13187. (2002/5/10)
Features of the cloned cDNA sequence
Description

Length: 4815 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 1808 bp
Genome contig ID gi51511731f_72108768
PolyA signal sequence
(AATAAA,-18)
+----*----+----*----+----*----+----
CGCGTCTGTATGCAGTCAATAAAACAATCGATTTG
Flanking genome sequence
(107428 - 107477)
----+----*----+----*----+----*----+----*----+----*
AACTGGGCTCGGTGACTTTTTGTCAGGGGACAGAGGGAGGAGGCCTGGGC

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 15 f 72208768 72216194 4 100.0 Perfect prediction
Features of the protein sequence
Description

Length: 785 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q6UXK2 0 100.0 Immunoglobulin ...
Homo sapiens
BAF83156 0 99.9 unnamed protein...
Homo sapiens
BAG53336 0 99.9 unnamed protein...
Homo sapiens
BAG52525 0 99.7 unnamed protein...
Homo sapiens
XP_001096467 0 97.5 similar to slit...
Macaca mulatta
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
D86983 1.8e-10 28.4 KIAA0230
AB011537 2e-09 28.6 KIAA0813
AB011538 2.1e-08 31.4 KIAA0814
AB007865 1.6e-07 26.2 KIAA0405
AB067491 6.7e-07 26.4 KIAA1904
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR001611 141 154 PR00019 Leucine-rich repeat
IPR001611 162 175 PR00019 Leucine-rich repeat
HMMPfam IPR001611 92 114 PF00560 Leucine-rich repeat
IPR001611 116 138 PF00560 Leucine-rich repeat
IPR001611 140 162 PF00560 Leucine-rich repeat
IPR001611 164 186 PF00560 Leucine-rich repeat
IPR001611 188 210 PF00560 Leucine-rich repeat
IPR000483 248 271 PF01463 Cysteine-rich flanking region
IPR013098 281 412 PF07679 Immunoglobulin I-set
HMMSmart IPR003591 89 113 SM00369 Leucine-rich repeat
IPR003591 114 137 SM00369 Leucine-rich repeat
IPR003591 138 161 SM00369 Leucine-rich repeat
IPR003591 162 185 SM00369 Leucine-rich repeat
IPR003591 186 209 SM00369 Leucine-rich repeat
IPR000483 221 271 SM00082 Cysteine-rich flanking region
ProfileScan IPR007110 273 411 PS50835 Immunoglobulin-like

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 1 GHNTCVYLAWAIFPALP 17 SECONDARY 17
2 36 ILGAAMFPLRALWLVWALLGVAG 58 PRIMARY 23
3 633 IVAVSVFLLVLATVPLLGAACCH 655 PRIMARY 23
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f TGTTACACTGCATCGCCGACG
Primer_r GCGTCAGCAAATCCCCATCTC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 15
Experimental conditions
Panel name CCR
Primer_f TGTTACACTGCATCGCCGACG
Primer_r GCGTCAGCAAATCCCCATCTC
PCR product length 162 bp
PCR conditions 95 °C15 sec66 °C60 sec30 cycles
Order Kazusa clone(s) from : Japan || Other countries
Back to the HUGE Protein Database homepage
Send a message to office AT kazusa.or.jp