hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-16074063/chunk_1/iprscan-20080502-16074063.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1904 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00560.23.ls Leucine Rich Repeat 41.6 2.5e-09 5 PF00560.23.fs Leucine Rich Repeat 33.1 5.3e-08 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00560.23.ls 2/5 81 103 .. 1 24 [] 9.5 4.4 PF00560.23.ls 3/5 105 127 .. 1 24 [] 11.7 1.7 PF00560.23.ls 5/5 153 175 .. 1 24 [] 12.7 1.1 Alignments of top-scoring domains: PF00560.23.ls: domain 2 of 5, from 81 to 103: score 9.5, E = 4.4 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL+ L+L N ++ ++++++ + KIAA1904 81 NLTDLNLTK-N-EIS-YIEDGaFlGQ 103 PF00560.23.ls: domain 3 of 5, from 105 to 127: score 11.7, E = 1.7 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L++L L++ N +l+ +l ++ l+++ KIAA1904 105 SLQVLQLGY-N-KLS-NLTEGmLrGM 127 PF00560.23.ls: domain 5 of 5, from 153 to 175: score 12.7, E = 1.1 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L ++dLs+ N +l+ l+ ++ +l KIAA1904 153 SLISIDLSS-N-RLS-RLDGAtFaSL 175 //