hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03374765/chunk_1/iprscan-20080502-03374765.nocrc
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Query sequence: KIAA1465
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00560.23.ls Leucine Rich Repeat                             67.3    4.5e-17   5
PF00560.23.fs Leucine Rich Repeat                             58.0    8.3e-15   5
PF07679.6.fs Immunoglobulin I-set domain                     26.5    4.1e-07   2
PF07679.6.ls Immunoglobulin I-set domain                     16.6    4.5e-05   1
PF01463.14.fs Leucine rich repeat C-terminal domain           18.0    0.00011   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00560.23.ls   1/5      92   114 ..     1    24 []     9.4      4.7
PF00560.23.ls   2/5     116   138 ..     1    24 []     9.2        5
PF00560.23.fs   3/5     140   162 ..     1    24 []    17.9  0.00074
PF00560.23.ls   3/5     140   162 ..     1    24 []    19.8    0.009
PF00560.23.ls   4/5     164   186 ..     1    24 []    13.1     0.95
PF00560.23.fs   4/5     164   186 ..     1    24 []    11.2    0.052
PF00560.23.fs   5/5     188   210 ..     1    24 []    14.0   0.0088
PF00560.23.ls   5/5     188   210 ..     1    24 []    15.9     0.14
PF01463.14.fs   1/1     248   271 ..     1    26 []    18.0  0.00011
PF07679.6.ls   1/1     281   412 ..     1    96 []    16.6  4.5e-05
PF07679.6.fs   2/2     390   412 ..    74    96 .]    23.4  3.1e-06

Alignments of top-scoring domains:
PF00560.23.ls: domain 1 of 5, from 92 to 114: score 9.4, E = 4.7
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      n+++L+Ls  N ++t  l  +++ +    
    KIAA1465    92    NVTTLSLSA-N-KIT-VLRRGaFaDV    114  

PF00560.23.ls: domain 2 of 5, from 116 to 138: score 9.2, E = 5
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      ++++L L + N  + +++++++l +l   
    KIAA1465   116    QVTSLWLAH-N-EV-RTVEPGaLaVL    138  

PF00560.23.fs: domain 3 of 5, from 140 to 162: score 17.9, E = 0.00074
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L++LdLs+ N  ++ s+p s+l+nl   
    KIAA1465   140    QLKNLDLSH-N-FIS-SFPWSdLrNL    162  

PF00560.23.ls: domain 3 of 5, from 140 to 162: score 19.8, E = 0.009
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L++LdLs+ N  ++ s+p s+l+nl   
    KIAA1465   140    QLKNLDLSH-N-FIS-SFPWSdLrNL    162  

PF00560.23.ls: domain 4 of 5, from 164 to 186: score 13.1, E = 0.95
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                       L+ L +++ N +l gslp ++l+ l   
    KIAA1465   164    ALQLLKMNH-N-RL-GSLPRDaLgAL    186  

PF00560.23.fs: domain 4 of 5, from 164 to 186: score 11.2, E = 0.052
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                       L+ L +++ N +l gslp ++l+ l   
    KIAA1465   164    ALQLLKMNH-N-RL-GSLPRDaLgAL    186  

PF00560.23.fs: domain 5 of 5, from 188 to 210: score 14.0, E = 0.0088
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                       L++L++++ N +l ++l++++++ l   
    KIAA1465   188    DLRSLRINN-N-RL-RTLAPGtFdAL    210  

PF00560.23.ls: domain 5 of 5, from 188 to 210: score 15.9, E = 0.14
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                       L++L++++ N +l ++l++++++ l   
    KIAA1465   188    DLRSLRINN-N-RL-RTLAPGtFdAL    210  

PF01463.14.fs: domain 1 of 1, from 248 to 271: score 18.0, E = 0.00011
                   *->dlrCasPeslrGqplldlppsdfsCp<-*
                      ++ CasP++l+G p+++lp   + C    
    KIAA1465   248    SIACASPPALQGVPVYRLP--ALPCA    271  

PF07679.6.ls: domain 1 of 1, from 281 to 412: score 16.6, E = 4.5e-05
                   *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKd...Gqplssv
                      P  + +  ++  + G + ++ C ++G+P+P  +W    ++G  + + 
    KIAA1465   281    PPLEAPGTPL--RAGLAFVLHCIADGHPTPRLQWQLQipgGTVVLEP 325  

                   ..........................................llpsdrfk
                   +  ++++++ + ++++++++++  ++++ +++++ +  + ++ +p  rf 
    KIAA1465   326 pvlsgeddgvgaeegegegdgdlltqtqaqtptpapawpappATP--RFL 373  

                   vtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV<-*
                     ++g     +L ++      +G+YtC+A N+ G  ++s+++ V   
    KIAA1465   374 ALANG-----SLLVPLLSAKEAGVYTCRAHNELGANSTSIRVAV    412  

PF07679.6.fs: domain 2 of 2, from 390 to 412: score 23.4, E = 3.1e-06
                   *->sGkYtCvAtNsaGeaeasaeLtV<-*
                      +G+YtC+A N+ G  ++s+++ V   
    KIAA1465   390    AGVYTCRAHNELGANSTSIRVAV    412  

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