hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16422606/chunk_1/iprscan-20080501-16422606.nocrc
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Query sequence: KIAA1076
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00856.18.ls SET domain                                     190.9    2.8e-54   1
PF00856.18.fs SET domain                                     189.5    7.7e-54   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00856.18.fs   1/1     659   788 ..     1   259 []   189.5  7.7e-54
PF00856.18.ls   1/1     659   788 ..     1   259 []   190.9  2.8e-54

Alignments of top-scoring domains:
PF00856.18.fs: domain 1 of 1, from 659 to 788: score 189.5, E = 7.7e-54
                   *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae
                      ++k ++++l+ +k++i+ wGl+a+e+I+++e++iEY+G  i++  a+
    KIAA1076   659    QLKFRKKKLKFCKSHIHDWGLFAMEPIAADEMVIEYVGQNIRQVIAD 705  

                   kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy
                   +re      k+y+++g++s+  Y+f+ d+                     
    KIAA1076   706 MRE------KRYEDEGIGSS--YMFRVDH--------------------- 726  

                   sPlfWseeellLkGtqlletdkleleeydllaeeievvlqhklFpdveee
                                                                     
    KIAA1076     - -------------------------------------------------- -    

                   fsfedflWaasivsSRafslvegvnresensegslelviDAtrkGNiaRF
                                                      + +iDAt+ GN+aRF
    KIAA1076   727 -----------------------------------DTIIDATKCGNFARF 741  

                   iNHSCePNcevqvvfvdgedpgsdedaglepgdprivlfAlrdIpaGeEL
                   iNHSC+PNc+++v++v+              + ++iv++++++I  +eE+
    KIAA1076   742 INHSCNPNCYAKVITVE--------------SQKKIVIYSKQHINVNEEI 777  

                   tydYgydksnge<-*
                   tydY+ ++ ++    
    KIAA1076   778 TYDYK-FPIEDV    788  

PF00856.18.ls: domain 1 of 1, from 659 to 788: score 190.9, E = 2.8e-54
                   *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae
                      ++k ++++l+ +k++i+ wGl+a+e+I+++e++iEY+G  i++  a+
    KIAA1076   659    QLKFRKKKLKFCKSHIHDWGLFAMEPIAADEMVIEYVGQNIRQVIAD 705  

                   kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy
                   +re      k+y+++g++s+  Y+f+ d+                     
    KIAA1076   706 MRE------KRYEDEGIGSS--YMFRVDH--------------------- 726  

                   sPlfWseeellLkGtqlletdkleleeydllaeeievvlqhklFpdveee
                                                                     
    KIAA1076     - -------------------------------------------------- -    

                   fsfedflWaasivsSRafslvegvnresensegslelviDAtrkGNiaRF
                                                      + +iDAt+ GN+aRF
    KIAA1076   727 -----------------------------------DTIIDATKCGNFARF 741  

                   iNHSCePNcevqvvfvdgedpgsdedaglepgdprivlfAlrdIpaGeEL
                   iNHSC+PNc+++v++v+              + ++iv++++++I  +eE+
    KIAA1076   742 INHSCNPNCYAKVITVE--------------SQKKIVIYSKQHINVNEEI 777  

                   tydYgydksnge<-*
                   tydY+ ++ ++    
    KIAA1076   778 TYDYK-FPIEDV    788  

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