NPAS1 ORF clone pFN21AB7802

KOP
KOP HaloTag ORF List Flexi search

Halotag ORF Clone pFN21AB7802

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Clone info.

Species

human

Clone Name

pFN21AB7802 Sequence (with vector) Restriction Map

Product ID

FHC26706

ORF Sequence

DNA sequence (1770 bp)
Protein sequence (590 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIBB7802

Symbol

NPAS1

Alias : MOP5, PASD5, bHLHe11

Description

neuronal PAS domain protein 1

Original Clone ID

cs00302

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1770 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 590 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS12694.1 4.3e-148 100.0 NPAS1 CCDS82371.1 5.4e-40 100.0 NPAS1 CCDS9645.1 2.2e-16 52.9 NPAS3 CCDS55912.1 2.2e-16 52.7 NPAS3 CCDS53892.1 2.2e-16 51.0 NPAS3 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR001092 52 96 PF00010 Helix-loop-helix DNA-binding domain IPR013767 141 198 PF00989 PAS fold IPR013655 316 388 PF08447 PAS fold-3 HMMSmart IPR001092 51 106 SM00353 Helix-loop-helix DNA-binding domain IPR000014 137 203 SM00091 PAS IPR000014 293 359 SM00091 PAS ProfileScan IPR001092 45 99 PS50888 Helix-loop-helix DNA-binding domain IPR000014 141 198 PS50112 PAS
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_002508 590 603346 100.0 100.0 XP_011525299 591 603346 99.8 100.0 XP_011525301 580 603346 71.0 96.3 XP_016882331 650 603346 90.4 95.3 XP_016882332 582 603346 77.0 90.7 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB7802 Download

>KIBB7802  1770 bp
ATGGCGGCCCCCTATCCCGGCAGTGGCGGCGGAAGCGAGGTCAAATGCGTGGGAGGCCGC
GGCGCCAGCGTCCCCTGGGACTTTCTACCCGGGCTGATGGTCAAGGCGCCGTCCGGACCG
TGCCTGCAGGCGCAGCGCAAGGAGAAGTCCCGGAACGCGGCGCGCTCGCGGCGCGGGAAG
GAGAACCTGGAGTTCTTCGAGCTGGCCAAGCTTCTCCCGCTGCCCGGCGCCATCTCCAGC
CAGCTGGACAAGGCTTCCATCGTGCGCCTCAGCGTCACCTACCTCCGCCTGCGCCGGTTC
GCCGCGCTGGGGGCGCCGCCCTGGGGGCTGAGAGCCGCGGGGCCGCCAGCTGGCCTCGCC
CCAGGCCGCCGCGGCCCCGCAGCGCTGGTCTCCGAAGTCTTCGAGCAGCACCTGGGAGGT
CACATCTTGCAGTCCCTGGATGGCTTTGTGTTCGCCTTGAACCAGGAAGGAAAATTCCTC
TACATCTCAGAGACAGTCTCCATCTATCTGGGTCTCTCACAGGTGGAGATGACGGGCAGC
AGCGTCTTCGACTACATTCACCCTGGGGACCACTCAGAGGTGCTGGAGCAACTGGGGCTG
CGGACGCCGACGCCCGGCCCCCCAACCCCGCCCTCCGTCTCCTCTTCCTCCTCCTCTTCC
TCTTCGCTTGCAGATACCCCCGAGATCGAGGCCAGCCTCACCAAGGTGCCCCCCTCCTCC
CTGGTCCAGGAGCGCTCCTTCTTTGTCCGCATGAAATCCACGCTCACCAAGAGGGGGCTG
CACGTCAAGGCCTCAGGGTACAAGGTCATCCACGTGACTGGGCGCCTTCGGGCCCACGCC
CTGGGCCTTGTGGCCCTCGGGCACACGTTGCCCCCGGCCCCCCTGGCTGAGCTGCCACTC
CATGGACACATGATCGTCTTCCGTCTCAGCCTGGGTCTCACCATCCTTGCTTGTGAGAGC
AGAGTCAGCGACCACATGGACCTGGGGCCCTCAGAGCTGGTGGGCCGCAGCTGCTACCAG
TTTGTCCACGGACAGGACGCCACGAGGATCCGCCAGAGCCACGTGGACTTGCTGGACAAG
GGTCAGGTGATGACTGGTTACTACCGTTGGCTGCAGCGTGCCGGGGGCTTCGTGTGGCTG
CAGTCTGTGGCCACAGTGGCTGGGAGCGGGAAGAGCCCCGGGGAGCACCATGTGCTTTGG
GTCAGCCACGTGCTCAGCCAAGCCGAGGGTGGCCAAACTCCTTTGGATGCCTTCCAGCTT
CCAGCCAGCGTGGCCTGTGAGGAGGCATCCAGCCCGGGGCCAGAGCCCACAGAGCCGGAG
CCTCCGACGGAAGGGAAGCAGGCTGCCCCAGCGGAGAACGAGGCCCCCCAGACCCAGGGC
AAACGCATCAAAGTGGAGCCCGGCCCGAGGGAAACCAAAGGCTCCGAGGACAGTGGCGAC
GAGGATCCCTCCAGCCACCCGGCCACACCGAGGCCCGAGTTCACCTCTGTCATCCGGGCA
GGGGTCCTGAAGCAGGATCCGGTGCGGCCATGGGGCCTGGCGCCTCCCGGGGACCCCCCG
CCCACCCTCCTGCACGCGGGCTTCCTGCCGCCGGTGGTGCGGGGCCTGTGCACACCCGGC
ACCATCCGCTACGGCCCCGCGGAGCTGGGCCTGGTGTACCCGCACCTGCAGAGGCTGGGT
CCGGGCCCCGCGCTCCCGGAGGCCTTTTACCCGCCCCTGGGCCTGCCCTACCCGGGGCCC
GCGGGCACCAGGCTGCCGCGGAAGGGGGAC

ORF Protein

Cloned ORF protein sequence for pFN21AB7802 Download

>KIBB7802  590 aa
MAAPYPGSGGGSEVKCVGGRGASVPWDFLPGLMVKAPSGPCLQAQRKEKSRNAARSRRGK
ENLEFFELAKLLPLPGAISSQLDKASIVRLSVTYLRLRRFAALGAPPWGLRAAGPPAGLA
PGRRGPAALVSEVFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVEMTGS
SVFDYIHPGDHSEVLEQLGLRTPTPGPPTPPSVSSSSSSSSSLADTPEIEASLTKVPPSS
LVQERSFFVRMKSTLTKRGLHVKASGYKVIHVTGRLRAHALGLVALGHTLPPAPLAELPL
HGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHVDLLDK
GQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQL
PASVACEEASSPGPEPTEPEPPTEGKQAAPAENEAPQTQGKRIKVEPGPRETKGSEDSGD
EDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGFLPPVVRGLCTPG
TIRYGPAELGLVYPHLQRLGPGPALPEAFYPPLGLPYPGPAGTRLPRKGD

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB7802 Download

>pFN21AB7802  6475 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGGCGGCCCCCTATCCCGGCAGTGGCGGCGGAAG
CGAGGTCAAATGCGTGGGAGGCCGCGGCGCCAGCGTCCCCTGGGACTTTCTACCCGGGCT
GATGGTCAAGGCGCCGTCCGGACCGTGCCTGCAGGCGCAGCGCAAGGAGAAGTCCCGGAA
CGCGGCGCGCTCGCGGCGCGGGAAGGAGAACCTGGAGTTCTTCGAGCTGGCCAAGCTTCT
CCCGCTGCCCGGCGCCATCTCCAGCCAGCTGGACAAGGCTTCCATCGTGCGCCTCAGCGT
CACCTACCTCCGCCTGCGCCGGTTCGCCGCGCTGGGGGCGCCGCCCTGGGGGCTGAGAGC
CGCGGGGCCGCCAGCTGGCCTCGCCCCAGGCCGCCGCGGCCCCGCAGCGCTGGTCTCCGA
AGTCTTCGAGCAGCACCTGGGAGGTCACATCTTGCAGTCCCTGGATGGCTTTGTGTTCGC
CTTGAACCAGGAAGGAAAATTCCTCTACATCTCAGAGACAGTCTCCATCTATCTGGGTCT
CTCACAGGTGGAGATGACGGGCAGCAGCGTCTTCGACTACATTCACCCTGGGGACCACTC
AGAGGTGCTGGAGCAACTGGGGCTGCGGACGCCGACGCCCGGCCCCCCAACCCCGCCCTC
CGTCTCCTCTTCCTCCTCCTCTTCCTCTTCGCTTGCAGATACCCCCGAGATCGAGGCCAG
CCTCACCAAGGTGCCCCCCTCCTCCCTGGTCCAGGAGCGCTCCTTCTTTGTCCGCATGAA
ATCCACGCTCACCAAGAGGGGGCTGCACGTCAAGGCCTCAGGGTACAAGGTCATCCACGT
GACTGGGCGCCTTCGGGCCCACGCCCTGGGCCTTGTGGCCCTCGGGCACACGTTGCCCCC
GGCCCCCCTGGCTGAGCTGCCACTCCATGGACACATGATCGTCTTCCGTCTCAGCCTGGG
TCTCACCATCCTTGCTTGTGAGAGCAGAGTCAGCGACCACATGGACCTGGGGCCCTCAGA
GCTGGTGGGCCGCAGCTGCTACCAGTTTGTCCACGGACAGGACGCCACGAGGATCCGCCA
GAGCCACGTGGACTTGCTGGACAAGGGTCAGGTGATGACTGGTTACTACCGTTGGCTGCA
GCGTGCCGGGGGCTTCGTGTGGCTGCAGTCTGTGGCCACAGTGGCTGGGAGCGGGAAGAG
CCCCGGGGAGCACCATGTGCTTTGGGTCAGCCACGTGCTCAGCCAAGCCGAGGGTGGCCA
AACTCCTTTGGATGCCTTCCAGCTTCCAGCCAGCGTGGCCTGTGAGGAGGCATCCAGCCC
GGGGCCAGAGCCCACAGAGCCGGAGCCTCCGACGGAAGGGAAGCAGGCTGCCCCAGCGGA
GAACGAGGCCCCCCAGACCCAGGGCAAACGCATCAAAGTGGAGCCCGGCCCGAGGGAAAC
CAAAGGCTCCGAGGACAGTGGCGACGAGGATCCCTCCAGCCACCCGGCCACACCGAGGCC
CGAGTTCACCTCTGTCATCCGGGCAGGGGTCCTGAAGCAGGATCCGGTGCGGCCATGGGG
CCTGGCGCCTCCCGGGGACCCCCCGCCCACCCTCCTGCACGCGGGCTTCCTGCCGCCGGT
GGTGCGGGGCCTGTGCACACCCGGCACCATCCGCTACGGCCCCGCGGAGCTGGGCCTGGT
GTACCCGCACCTGCAGAGGCTGGGTCCGGGCCCCGCGCTCCCGGAGGCCTTTTACCCGCC
CCTGGGCCTGCCCTACCCGGGGCCCGCGGGCACCAGGCTGCCGCGGAAGGGGGACGTTTA
AACGAATTCGGGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTG
ATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAAT
AACTAGCATAACCCCTTGGGGCGGCCGCTTCGAGCAGACATGATAAGATACATTGATGAG
TTTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGAT
GCTATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAATTGC
ATTCATTTTATGTTTCAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGCAAGTAAAAC
CTCTACAAATGTGGTAAAATCGAATTCTAATGGATCCTCTTTGCGCTTGCGTTTTCCCTT
GTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCT
TTCTACGTAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACC
CCTATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCC
TGATAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTC
GCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTG
GTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGAT
CTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGC
ACTTTCAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAA
CTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAA
AAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGT
GATAACACTGCGGCCAACTTACTTCTGACAACTATCGGAGGACCGAAGGAGCTAACCGCT
TTTTTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAAT
GAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTG
CGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGG
ATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTT
ATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGG
CCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATG
GATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAATTC
GAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGT
TATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGG
CCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACG
AGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGAT
ACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTA
CCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCT
GTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCC
CCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAA
GACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATG
TAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAG
TATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTT
GATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTA
CGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTC
AGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCA
CCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGA
TGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTAC
CCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTT
TCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTA
GCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATC
GAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT