RBMS1 ORF clone pFN21AB6594

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone pFN21AB6594

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Clone info.

Species

human

Clone Name

pFN21AB6594 Sequence (with vector) Restriction Map

Product ID

FHC21206

ORF Sequence

DNA sequence (1218 bp)
Protein sequence (406 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIBB6594

Symbol

RBMS1

Alias : C2orf12, HCC-4, MSSP, MSSP-1, MSSP-2, MSSP-3, SCR2, YC1

Description

RNA binding motif, single stranded interacting protein 1, transcript variant 1

Original Clone ID

cs01194

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1218 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 406 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS2213.1 2.4e-114 100.0 RBMS1 CCDS33726.1 7.3e-82 73.8 RBMS3 CCDS54558.1 7.3e-82 73.8 RBMS3 CCDS33724.1 9.7e-79 71.1 RBMS3 CCDS8923.1 8.9e-75 69.5 RBMS2 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR002343 62 77 PR00961 Paraneoplastic encephalomyelitis antigen IPR002343 146 161 PR00961 Paraneoplastic encephalomyelitis antigen IPR002343 161 173 PR00961 Paraneoplastic encephalomyelitis antigen IPR002343 207 224 PR00961 Paraneoplastic encephalomyelitis antigen HMMPfam IPR000504 64 124 PF00076 RNA recognition motif domain IPR000504 143 207 PF00076 RNA recognition motif domain HMMSmart IPR000504 63 131 SM00360 RNA recognition motif domain IPR000504 142 213 SM00360 RNA recognition motif domain ProfileScan IPR000504 62 135 PS50102 RNA recognition motif domain IPR000504 141 226 PS50102 RNA recognition motif domain
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_058520 406 602310 100.0 100.0 NP_002888 403 602310 99.3 100.0 XP_016860115 402 602310 99.0 100.0 XP_005246794 422 602310 96.2 100.0 XP_005246795 421 602310 96.0 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB6594 Download

>KIBB6594  1218 bp
ATGGGCAAAGTGTGGAAACAGCAGATGTACCCTCAGTACGCCACCTACTATTACCCCCAG
TATCTGCAAGCCAAGCAGTCTCTGGTCCCAGCCCACCCCATGGCCCCTCCCAGTCCCAGC
ACCACCAGCAGTAATAACAACAGTAGCAGCAGTAGCAACTCAGGATGGGATCAGCTCAGC
AAAACGAACCTCTATATCCGAGGACTGCCTCCCCACACCACCGACCAGGACCTGGTGAAG
CTCTGTCAACCATATGGGAAAATAGTCTCCACAAAGGCAATTTTGGATAAGACAACGAAC
AAATGCAAAGGTTATGGTTTTGTCGACTTTGACAGCCCTGCAGCAGCTCAAAAAGCTGTG
TCTGCCCTGAAGGCCAGTGGGGTTCAAGCTCAAATGGCAAAGCAACAGGAACAAGATCCT
ACCAACCTCTACATTTCTAATTTGCCACTCTCCATGGATGAGCAAGAACTAGAAAATATG
CTCAAACCATTTGGACAAGTTATTTCTACAAGGATACTACGTGATTCCAGTGGTACAAGT
CGTGGTGTTGGCTTTGCTAGGATGGAATCAACAGAAAAATGTGAAGCTGTTATTGGTCAT
TTTAATGGAAAATTTATTAAGACACCACCAGGAGTTTCTGCCCCCACAGAACCTTTATTG
TGTAAGTTTGCTGATGGAGGACAGAAAAAGAGACAGAACCCAAACAAATACATCCCTAAT
GGAAGACCATGGCATAGAGAAGGAGAGGTGAGACTTGCTGGAATGACACTTACTTACGAC
CCAACTACAGCTGCTATACAGAACGGATTTTATCCTTCACCATACAGTATTGCTACAAAC
CGAATGATCACTCAAACTTCTATTACACCCTATATTGCATCTCCTGTATCTGCCTACCAG
GTGCAAAGTCCTTCGTGGATGCAACCTCAACCATATATTCTACAGCACCCTGGTGCCGTG
TTAACTCCCTCAATGGAGCACACCATGTCACTACAGCCCGCATCAATGATCAGCCCTCTG
GCCCAGCAGATGAGTCATCTGTCACTAGGCAGCACCGGAACATACATGCCTGCAACGTCA
GCTATGCAAGGAGCCTACTTGCCACAGTATGCACATATGCAGACGACAGCGGTTCCTGTT
GAGGAGGCAAGTGGTCAACAGCAGGTGGCTGTCGAGACGTCTAATGACCATTCTCCATAT
ACCTTTCAACCTAATAAG

ORF Protein

Cloned ORF protein sequence for pFN21AB6594 Download

>KIBB6594  406 aa
MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS
KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV
SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS
RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN
GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ
VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS
AMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQPNK

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB6594 Download

>pFN21AB6594  5923 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGGGCAAAGTGTGGAAACAGCAGATGTACCCTCA
GTACGCCACCTACTATTACCCCCAGTATCTGCAAGCCAAGCAGTCTCTGGTCCCAGCCCA
CCCCATGGCCCCTCCCAGTCCCAGCACCACCAGCAGTAATAACAACAGTAGCAGCAGTAG
CAACTCAGGATGGGATCAGCTCAGCAAAACGAACCTCTATATCCGAGGACTGCCTCCCCA
CACCACCGACCAGGACCTGGTGAAGCTCTGTCAACCATATGGGAAAATAGTCTCCACAAA
GGCAATTTTGGATAAGACAACGAACAAATGCAAAGGTTATGGTTTTGTCGACTTTGACAG
CCCTGCAGCAGCTCAAAAAGCTGTGTCTGCCCTGAAGGCCAGTGGGGTTCAAGCTCAAAT
GGCAAAGCAACAGGAACAAGATCCTACCAACCTCTACATTTCTAATTTGCCACTCTCCAT
GGATGAGCAAGAACTAGAAAATATGCTCAAACCATTTGGACAAGTTATTTCTACAAGGAT
ACTACGTGATTCCAGTGGTACAAGTCGTGGTGTTGGCTTTGCTAGGATGGAATCAACAGA
AAAATGTGAAGCTGTTATTGGTCATTTTAATGGAAAATTTATTAAGACACCACCAGGAGT
TTCTGCCCCCACAGAACCTTTATTGTGTAAGTTTGCTGATGGAGGACAGAAAAAGAGACA
GAACCCAAACAAATACATCCCTAATGGAAGACCATGGCATAGAGAAGGAGAGGTGAGACT
TGCTGGAATGACACTTACTTACGACCCAACTACAGCTGCTATACAGAACGGATTTTATCC
TTCACCATACAGTATTGCTACAAACCGAATGATCACTCAAACTTCTATTACACCCTATAT
TGCATCTCCTGTATCTGCCTACCAGGTGCAAAGTCCTTCGTGGATGCAACCTCAACCATA
TATTCTACAGCACCCTGGTGCCGTGTTAACTCCCTCAATGGAGCACACCATGTCACTACA
GCCCGCATCAATGATCAGCCCTCTGGCCCAGCAGATGAGTCATCTGTCACTAGGCAGCAC
CGGAACATACATGCCTGCAACGTCAGCTATGCAAGGAGCCTACTTGCCACAGTATGCACA
TATGCAGACGACAGCGGTTCCTGTTGAGGAGGCAAGTGGTCAACAGCAGGTGGCTGTCGA
GACGTCTAATGACCATTCTCCATATACCTTTCAACCTAATAAGGTTTAAACGAATTCGGG
CTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTA
ACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAAC
CCCTTGGGGCGGCCGCTTCGAGCAGACATGATAAGATACATTGATGAGTTTGGACAAACC
ACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTA
TTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAATTGCATTCATTTTATG
TTTCAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGCAAGTAAAACCTCTACAAATGT
GGTAAAATCGAATTCTAATGGATCCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCC
CAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTAATG
GTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTA
TTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTT
CAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCC
TTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAA
GATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGT
AAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTCAAAGTT
CTGCTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGC
ATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACG
GATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCG
GCCAACTTACTTCTGACAACTATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAAC
ATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCA
AACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTA
ACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGAT
AAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAA
TCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAG
CCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAAT
AGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAATTCGAAATGACCGAC
CAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAAT
CAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTA
AAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAA
ATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTC
CCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGT
CCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCA
GTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCG
ACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTAT
CGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTA
CAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCT
GCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAAC
AAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAA
AAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAA
ACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTT
TATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCAT
GAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCA
TAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTG
TTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACA
ATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGC
AGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT