FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6594, 406 aa 1>>>pF1KB6594 406 - 406 aa - 406 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.4272+/-0.000397; mu= 15.5534+/- 0.025 mean_var=210.3992+/-46.531, 0's: 0 Z-trim(119.6): 292 B-trim: 3247 in 2/49 Lambda= 0.088420 statistics sampled from 33441 (33804) to 33441 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.396), width: 16 Scan time: 6.150 The best scores are: opt bits E(85289) NP_058520 (OMIM: 602310) RNA-binding motif, single ( 406) 2734 361.3 2.4e-99 NP_002888 (OMIM: 602310) RNA-binding motif, single ( 403) 2701 357.1 4.3e-98 XP_016860115 (OMIM: 602310) PREDICTED: RNA-binding ( 402) 2682 354.7 2.3e-97 XP_005246794 (OMIM: 602310) PREDICTED: RNA-binding ( 422) 2058 275.1 2.2e-73 XP_005246795 (OMIM: 602310) PREDICTED: RNA-binding ( 421) 2039 272.7 1.2e-72 XP_005246797 (OMIM: 602310) PREDICTED: RNA-binding ( 419) 2021 270.4 5.7e-72 NP_055298 (OMIM: 605786) RNA-binding motif, single ( 420) 1993 266.8 6.8e-71 NP_001171182 (OMIM: 605786) RNA-binding motif, sin ( 421) 1993 266.8 6.8e-71 XP_016861668 (OMIM: 605786) PREDICTED: RNA-binding ( 420) 1974 264.4 3.7e-70 NP_001003793 (OMIM: 605786) RNA-binding motif, sin ( 437) 1922 257.8 3.7e-68 XP_016861667 (OMIM: 605786) PREDICTED: RNA-binding ( 435) 1903 255.4 2e-67 XP_005265117 (OMIM: 605786) PREDICTED: RNA-binding ( 436) 1903 255.4 2e-67 XP_005246798 (OMIM: 602310) PREDICTED: RNA-binding ( 419) 1881 252.6 1.4e-66 XP_005246796 (OMIM: 602310) PREDICTED: RNA-binding ( 420) 1877 252.0 1.9e-66 XP_006719607 (OMIM: 602387) PREDICTED: RNA-binding ( 407) 1831 246.2 1.1e-64 NP_002889 (OMIM: 602387) RNA-binding motif, single ( 407) 1831 246.2 1.1e-64 XP_011536942 (OMIM: 602387) PREDICTED: RNA-binding ( 407) 1831 246.2 1.1e-64 XP_016875264 (OMIM: 602387) PREDICTED: RNA-binding ( 388) 1827 245.6 1.5e-64 XP_016861669 (OMIM: 605786) PREDICTED: RNA-binding ( 404) 1746 235.3 2e-61 XP_005269118 (OMIM: 602387) PREDICTED: RNA-binding ( 388) 1745 235.2 2.2e-61 XP_006719606 (OMIM: 602387) PREDICTED: RNA-binding ( 429) 1742 234.8 3e-61 XP_005265119 (OMIM: 605786) PREDICTED: RNA-binding ( 419) 1737 234.2 4.6e-61 XP_005265118 (OMIM: 605786) PREDICTED: RNA-binding ( 420) 1737 234.2 4.6e-61 XP_016861670 (OMIM: 605786) PREDICTED: RNA-binding ( 403) 1727 232.9 1.1e-60 NP_001003792 (OMIM: 605786) RNA-binding motif, sin ( 419) 1718 231.8 2.5e-60 XP_011536941 (OMIM: 602387) PREDICTED: RNA-binding ( 414) 1640 221.8 2.4e-57 XP_005269117 (OMIM: 602387) PREDICTED: RNA-binding ( 419) 1640 221.8 2.4e-57 XP_005269116 (OMIM: 602387) PREDICTED: RNA-binding ( 448) 1640 221.9 2.5e-57 XP_006719605 (OMIM: 602387) PREDICTED: RNA-binding ( 448) 1640 221.9 2.5e-57 XP_006719604 (OMIM: 602387) PREDICTED: RNA-binding ( 477) 1640 221.9 2.6e-57 XP_011536939 (OMIM: 602387) PREDICTED: RNA-binding ( 458) 1636 221.4 3.7e-57 XP_016861671 (OMIM: 605786) PREDICTED: RNA-binding ( 370) 1601 216.8 7.2e-56 NP_001171183 (OMIM: 605786) RNA-binding motif, sin ( 433) 1488 202.4 1.7e-51 XP_011536940 (OMIM: 602387) PREDICTED: RNA-binding ( 430) 1391 190.1 9.1e-48 XP_005265122 (OMIM: 605786) PREDICTED: RNA-binding ( 328) 1226 168.9 1.7e-41 XP_005265120 (OMIM: 605786) PREDICTED: RNA-binding ( 342) 1222 168.4 2.5e-41 XP_011536944 (OMIM: 602387) PREDICTED: RNA-binding ( 352) 1102 153.1 1e-36 XP_005269123 (OMIM: 602387) PREDICTED: RNA-binding ( 214) 889 125.6 1.2e-28 XP_016875267 (OMIM: 602387) PREDICTED: RNA-binding ( 237) 796 113.8 4.6e-25 XP_016875265 (OMIM: 602387) PREDICTED: RNA-binding ( 307) 758 109.1 1.5e-23 XP_016875266 (OMIM: 602387) PREDICTED: RNA-binding ( 296) 751 108.2 2.8e-23 XP_011516080 (OMIM: 601673) PREDICTED: ELAV-like p ( 392) 423 66.5 1.3e-10 XP_016869904 (OMIM: 601673) PREDICTED: ELAV-like p ( 376) 422 66.4 1.4e-10 XP_016869906 (OMIM: 601673) PREDICTED: ELAV-like p ( 373) 420 66.1 1.6e-10 XP_011516085 (OMIM: 601673) PREDICTED: ELAV-like p ( 374) 420 66.1 1.6e-10 XP_016869905 (OMIM: 601673) PREDICTED: ELAV-like p ( 375) 419 66.0 1.8e-10 XP_011516079 (OMIM: 601673) PREDICTED: ELAV-like p ( 375) 419 66.0 1.8e-10 XP_011516078 (OMIM: 601673) PREDICTED: ELAV-like p ( 376) 419 66.0 1.8e-10 XP_016869899 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 419 66.0 1.8e-10 XP_016869897 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 419 66.0 1.8e-10 >>NP_058520 (OMIM: 602310) RNA-binding motif, single-str (406 aa) initn: 2734 init1: 2734 opt: 2734 Z-score: 1904.7 bits: 361.3 E(85289): 2.4e-99 Smith-Waterman score: 2734; 100.0% identity (100.0% similar) in 406 aa overlap (1-406:1-406) 10 20 30 40 50 60 pF1KB6 MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_058 MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_058 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_058 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB6 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_058 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB6 GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_058 GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB6 VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_058 VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS 310 320 330 340 350 360 370 380 390 400 pF1KB6 AMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQPNK :::::::::::::::::::::::::::::::::::::::::::::: NP_058 AMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQPNK 370 380 390 400 >>NP_002888 (OMIM: 602310) RNA-binding motif, single-str (403 aa) initn: 2703 init1: 1695 opt: 2701 Z-score: 1882.0 bits: 357.1 E(85289): 4.3e-98 Smith-Waterman score: 2701; 99.3% identity (99.3% similar) in 406 aa overlap (1-406:1-403) 10 20 30 40 50 60 pF1KB6 MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB6 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB6 GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::: NP_002 GRPWHREGE---AGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ 250 260 270 280 290 310 320 330 340 350 360 pF1KB6 VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS 300 310 320 330 340 350 370 380 390 400 pF1KB6 AMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQPNK :::::::::::::::::::::::::::::::::::::::::::::: NP_002 AMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQPNK 360 370 380 390 400 >>XP_016860115 (OMIM: 602310) PREDICTED: RNA-binding mot (402 aa) initn: 2521 init1: 1513 opt: 2682 Z-score: 1868.9 bits: 354.7 E(85289): 2.3e-97 Smith-Waterman score: 2682; 99.0% identity (99.0% similar) in 406 aa overlap (1-406:1-402) 10 20 30 40 50 60 pF1KB6 MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS ::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: XP_016 MGKVWKQQMYPQYATYYYPQYLQAK-SLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS 10 20 30 40 50 70 80 90 100 110 120 pF1KB6 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV 60 70 80 90 100 110 130 140 150 160 170 180 pF1KB6 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS 120 130 140 150 160 170 190 200 210 220 230 240 pF1KB6 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN 180 190 200 210 220 230 250 260 270 280 290 300 pF1KB6 GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GRPWHREGE---AGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ 240 250 260 270 280 290 310 320 330 340 350 360 pF1KB6 VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS 300 310 320 330 340 350 370 380 390 400 pF1KB6 AMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQPNK :::::::::::::::::::::::::::::::::::::::::::::: XP_016 AMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQPNK 360 370 380 390 400 >>XP_005246794 (OMIM: 602310) PREDICTED: RNA-binding mot (422 aa) initn: 2025 init1: 2025 opt: 2058 Z-score: 1438.5 bits: 275.1 E(85289): 2.2e-73 Smith-Waterman score: 2692; 96.2% identity (96.2% similar) in 422 aa overlap (1-406:1-422) 10 20 30 40 50 60 pF1KB6 MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB6 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB6 GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ 250 260 270 280 290 300 310 320 330 340 pF1KB6 V----------------QSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQM : ::::::::::::::::::::::::::::::::::::::::::: XP_005 VAKETRENKYRGSAIKVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQM 310 320 330 340 350 360 350 360 370 380 390 400 pF1KB6 SHLSLGSTGTYMPATSAMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SHLSLGSTGTYMPATSAMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQP 370 380 390 400 410 420 pF1KB6 NK :: XP_005 NK >>XP_005246795 (OMIM: 602310) PREDICTED: RNA-binding mot (421 aa) initn: 1843 init1: 1843 opt: 2039 Z-score: 1425.4 bits: 272.7 E(85289): 1.2e-72 Smith-Waterman score: 2673; 96.0% identity (96.0% similar) in 422 aa overlap (1-406:1-421) 10 20 30 40 50 60 pF1KB6 MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS ::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: XP_005 MGKVWKQQMYPQYATYYYPQYLQAK-SLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS 10 20 30 40 50 70 80 90 100 110 120 pF1KB6 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV 60 70 80 90 100 110 130 140 150 160 170 180 pF1KB6 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS 120 130 140 150 160 170 190 200 210 220 230 240 pF1KB6 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN 180 190 200 210 220 230 250 260 270 280 290 300 pF1KB6 GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ 240 250 260 270 280 290 310 320 330 340 pF1KB6 V----------------QSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQM : ::::::::::::::::::::::::::::::::::::::::::: XP_005 VAKETRENKYRGSAIKVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQM 300 310 320 330 340 350 350 360 370 380 390 400 pF1KB6 SHLSLGSTGTYMPATSAMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SHLSLGSTGTYMPATSAMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQP 360 370 380 390 400 410 pF1KB6 NK :: XP_005 NK 420 >>XP_005246797 (OMIM: 602310) PREDICTED: RNA-binding mot (419 aa) initn: 2406 init1: 1695 opt: 2021 Z-score: 1413.0 bits: 270.4 E(85289): 5.7e-72 Smith-Waterman score: 2659; 95.5% identity (95.5% similar) in 422 aa overlap (1-406:1-419) 10 20 30 40 50 60 pF1KB6 MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB6 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB6 GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GRPWHREGE---AGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ 250 260 270 280 290 310 320 330 340 pF1KB6 V----------------QSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQM : ::::::::::::::::::::::::::::::::::::::::::: XP_005 VAKETRENKYRGSAIKVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQM 300 310 320 330 340 350 350 360 370 380 390 400 pF1KB6 SHLSLGSTGTYMPATSAMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SHLSLGSTGTYMPATSAMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQP 360 370 380 390 400 410 pF1KB6 NK :: XP_005 NK >>NP_055298 (OMIM: 605786) RNA-binding motif, single-str (420 aa) initn: 1865 init1: 1217 opt: 1993 Z-score: 1393.7 bits: 266.8 E(85289): 6.8e-71 Smith-Waterman score: 2037; 73.8% identity (86.9% similar) in 427 aa overlap (1-406:1-420) 10 20 30 40 50 pF1KB6 MGKVWKQ-QMYPQYATYYYPQYLQAKQSLVPA-HPMAPPSPSTTSSNNNSSSSSNSGWDQ ::: : :::::: :::::.:::.::: .:: ::::::::::.::.::::. ::. .: NP_055 MGKRLDQPQMYPQY-TYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNNSSN--NSSGEQ 10 20 30 40 50 60 70 80 90 100 110 pF1KB6 LSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQK ::::::::::::: ::::::.::::::::::::::::::.::.::::::::::::::::: NP_055 LSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQK 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB6 AVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG ::..:::.:::::::::::::::::::::::.:::::::::::::::.:::::::::..: NP_055 AVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANG 120 130 140 150 160 170 180 190 200 210 220 230 pF1KB6 TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYI .::::::::::::::::.:: :::::..:::::. ::.::::::::::::::::: .:: NP_055 VSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYT 180 190 200 210 220 230 240 250 260 270 280 290 pF1KB6 PNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIA-SPVS ::::: :::: :::.:::::: :::::::: ::::::::::: ::::::.:: :::: NP_055 QNGRPWPREGE---AGMALTYDPT-AAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVS 240 250 260 270 280 290 300 310 320 330 340 350 pF1KB6 AYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMP .::::: ::: ::..: :::.::.:.: ::.:::.:..::.:::.:::::.::::: NP_055 TYQVQSTSWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTYMT 300 310 320 330 340 350 360 370 380 390 pF1KB6 ATSAMQGAYLPQYAHMQTTAVPVE----------------EASGQQQ-VAVETSNDHSP- :.. :::.:.:::. . ::: .: ..::::: .::.:::.:.: NP_055 AAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHAPA 360 370 380 390 400 410 400 pF1KB6 YTFQPNK :..: .: NP_055 YSYQQSK 420 >>NP_001171182 (OMIM: 605786) RNA-binding motif, single- (421 aa) initn: 1865 init1: 1217 opt: 1993 Z-score: 1393.7 bits: 266.8 E(85289): 6.8e-71 Smith-Waterman score: 2037; 73.8% identity (86.9% similar) in 427 aa overlap (1-406:1-420) 10 20 30 40 50 pF1KB6 MGKVWKQ-QMYPQYATYYYPQYLQAKQSLVPA-HPMAPPSPSTTSSNNNSSSSSNSGWDQ ::: : :::::: :::::.:::.::: .:: ::::::::::.::.::::. ::. .: NP_001 MGKRLDQPQMYPQY-TYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNNSSN--NSSGEQ 10 20 30 40 50 60 70 80 90 100 110 pF1KB6 LSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQK ::::::::::::: ::::::.::::::::::::::::::.::.::::::::::::::::: NP_001 LSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQK 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB6 AVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG ::..:::.:::::::::::::::::::::::.:::::::::::::::.:::::::::..: NP_001 AVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANG 120 130 140 150 160 170 180 190 200 210 220 230 pF1KB6 TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYI .::::::::::::::::.:: :::::..:::::. ::.::::::::::::::::: .:: NP_001 VSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYT 180 190 200 210 220 230 240 250 260 270 280 290 pF1KB6 PNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIA-SPVS ::::: :::: :::.:::::: :::::::: ::::::::::: ::::::.:: :::: NP_001 QNGRPWPREGE---AGMALTYDPT-AAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVS 240 250 260 270 280 290 300 310 320 330 340 350 pF1KB6 AYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMP .::::: ::: ::..: :::.::.:.: ::.:::.:..::.:::.:::::.::::: NP_001 TYQVQSTSWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTYMT 300 310 320 330 340 350 360 370 380 390 pF1KB6 ATSAMQGAYLPQYAHMQTTAVPVE----------------EASGQQQ-VAVETSNDHSP- :.. :::.:.:::. . ::: .: ..::::: .::.:::.:.: NP_001 AAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHAPA 360 370 380 390 400 410 400 pF1KB6 YTFQPNK :..: .: NP_001 YSYQQSKP 420 >>XP_016861668 (OMIM: 605786) PREDICTED: RNA-binding mot (420 aa) initn: 1859 init1: 1211 opt: 1974 Z-score: 1380.6 bits: 264.4 E(85289): 3.7e-70 Smith-Waterman score: 2018; 73.5% identity (86.7% similar) in 427 aa overlap (1-406:1-419) 10 20 30 40 50 pF1KB6 MGKVWKQ-QMYPQYATYYYPQYLQAKQSLVPA-HPMAPPSPSTTSSNNNSSSSSNSGWDQ ::: : :::::: :::::.:::.: : .:: ::::::::::.::.::::. ::. .: XP_016 MGKRLDQPQMYPQY-TYYYPHYLQTK-SYAPAPHPMAPPSPSTNSSSNNSSN--NSSGEQ 10 20 30 40 50 60 70 80 90 100 110 pF1KB6 LSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQK ::::::::::::: ::::::.::::::::::::::::::.::.::::::::::::::::: XP_016 LSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQK 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB6 AVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG ::..:::.:::::::::::::::::::::::.:::::::::::::::.:::::::::..: XP_016 AVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANG 120 130 140 150 160 170 180 190 200 210 220 230 pF1KB6 TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYI .::::::::::::::::.:: :::::..:::::. ::.::::::::::::::::: .:: XP_016 VSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYT 180 190 200 210 220 230 240 250 260 270 280 290 pF1KB6 PNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIA-SPVS ::::: :::: :::.:::::: :::::::: ::::::::::: ::::::.:: :::: XP_016 QNGRPWPREGE---AGMALTYDPT-AAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVS 240 250 260 270 280 290 300 310 320 330 340 350 pF1KB6 AYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMP .::::: ::: ::..: :::.::.:.: ::.:::.:..::.:::.:::::.::::: XP_016 TYQVQSTSWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTYMT 300 310 320 330 340 350 360 370 380 390 pF1KB6 ATSAMQGAYLPQYAHMQTTAVPVE----------------EASGQQQ-VAVETSNDHSP- :.. :::.:.:::. . ::: .: ..::::: .::.:::.:.: XP_016 AAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHAPA 360 370 380 390 400 410 400 pF1KB6 YTFQPNK :..: .: XP_016 YSYQQSKP 420 >>NP_001003793 (OMIM: 605786) RNA-binding motif, single- (437 aa) initn: 1526 init1: 1217 opt: 1922 Z-score: 1344.6 bits: 257.8 E(85289): 3.7e-68 Smith-Waterman score: 1995; 71.1% identity (83.7% similar) in 443 aa overlap (1-406:1-436) 10 20 30 40 50 pF1KB6 MGKVWKQ-QMYPQYATYYYPQYLQAKQSLVPA-HPMAPPSPSTTSSNNNSSSSSNSGWDQ ::: : :::::: :::::.:::.::: .:: ::::::::::.::.::::. ::. .: NP_001 MGKRLDQPQMYPQY-TYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNNSSN--NSSGEQ 10 20 30 40 50 60 70 80 90 100 110 pF1KB6 LSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQK ::::::::::::: ::::::.::::::::::::::::::.::.::::::::::::::::: NP_001 LSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQK 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB6 AVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG ::..:::.:::::::::::::::::::::::.:::::::::::::::.:::::::::..: NP_001 AVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANG 120 130 140 150 160 170 180 190 200 210 220 230 pF1KB6 TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYI .::::::::::::::::.:: :::::..:::::. ::.::::::::::::::::: .:: NP_001 VSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYT 180 190 200 210 220 230 240 250 260 270 280 290 pF1KB6 PNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIA-SPVS ::::: :::: :::.:::::: :::::::: ::::::::::: ::::::.:: :::: NP_001 QNGRPWPREGE---AGMALTYDPT-AAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVS 240 250 260 270 280 290 300 310 320 330 340 350 pF1KB6 AYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGT--- .::::: ::: ::..: :::.::.:.: ::.:::.:..::.:::.:::::.::: NP_001 TYQVQSTSWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTIQS 300 310 320 330 340 350 360 370 380 pF1KB6 -------------YMPATSAMQGAYLPQYAHMQTTAVPVE----------------EASG :: :.. :::.:.:::. . ::: .: ..:: NP_001 QDRIMILHQLLCQYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSG 360 370 380 390 400 410 390 400 pF1KB6 QQQ-VAVETSNDHSP-YTFQPNK ::: .::.:::.:.: :..: .: NP_001 QQQQIAVDTSNEHAPAYSYQQSKP 420 430 406 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 01:35:34 2016 done: Tue Nov 8 01:35:35 2016 Total Scan time: 6.150 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]