ROUGE

Gene/Protein Characteristic Table for mKIAA0108

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK084515
Description :	Lysosomal-associated transmembrane protein 4A.
Clone Name :	mpk01802 [Vector Info]
Source :	Mouse embryonic tail

Features of the cloned DNA sequence	Description

Length: 1358 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 536 bp

Genome contig ID gi65532617f_8138380
PolyA signal sequence
(AATAAA,-19)
+----*----+----*----+----*----+----
TGTGATAAACCGCTTTAATAAAGCTCATAAATTTT
Flanking genome sequence
(116665 - 116714)
----+----*----+----*----+----*----+----*----+----*
ACCATTGTCCTTAAATGTGCCTCATGTTTATGCTATAACTTAGAGCGATC

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0108 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0108	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 1..822
Length: 273 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
NP_032666	2.8e-116	100.0	lysosomal-assoc...	Mus musculus
EDM03082	4.9e-113	97.8	lysosomal-assoc...	Rattus norvegicus
BAC35897	6.6e-97	100.0	unnamed protein...	Mus musculus
Q6P501	1.4e-96	99.6	Lysosomal-assoc...	Rattus norvegicus
Q60961	6.5e-96	99.6	Lysosomal-assoc...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK172885	0.00073	28.7	mKIAA0085

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR004687 77 273 PF03821 Golgi 4-transmembrane spanning transporter

HMMTigr IPR004687 50 273 TIGR00799 Golgi 4-transmembrane spanning transporter

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR004687	77	273	PF03821	Golgi 4-transmembrane spanning transporter
HMMTigr	IPR004687	50	273	TIGR00799	Golgi 4-transmembrane spanning transporter

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 69 91 TIILGTWYMVVNLLMAILLTVEV

117 139 ADNACVLFAVSVLMFIISSMLVY

149 171 LIPFFCYRLFDFVLSCLVAISSL

200 222 CLLFIVLVFFVVFIIFKAYLINC

Method	From	To	amino acid sequence
SOSUI	69	91	TIILGTWYMVVNLLMAILLTVEV
117	139	ADNACVLFAVSVLMFIISSMLVY
149	171	LIPFFCYRLFDFVLSCLVAISSL
200	222	CLLFIVLVFFVVFIIFKAYLINC

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	536 bp
Genome contig ID	gi65532617f_8138380
PolyA signal sequence (AATAAA,-19)	+--------+--------+----*----+---- TGTGATAAACCGCTTTAATAAAGCTCATAAATTTT
Flanking genome sequence (116665 - 116714)	----+--------+--------+--------+--------+----* ACCATTGTCCTTAAATGTGCCTCATGTTTATGCTATAACTTAGAGCGATC

Gene/Protein Characteristic Table for mKIAA0108

Features of the cloned DNA sequence

Features of the protein sequence