hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpk/mpk01802/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0108  ( 273 res)   mpk01802

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Mtp      Golgi 4-transmembrane spanning transporter     451.7   6.1e-132   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Mtp        1/1      77   273 .]     1   235 []   451.7 6.1e-132

Alignments of top-scoring domains:
Mtp: domain 1 of 1, from 77 to 273: score 451.7, E = 6.1e-132
                   *->ivmsvLLlIllsVEvAhpkssCklskmgYLRiADLlSSFLLItvlfn
                      +v+++L++Ill+VEv+hp+s+                      +++n
   mKIAA0108    77    MVVNLLMAILLTVEVTHPNSM----------------------PAVN 101  

                   islSeLiGvvKNREKYlleFlsdqnmcvllalsvLlgliielpaYgalas
                   i++ e+iG++     Y++e+++d n+cvl+a+svL+++i+++++Yga++ 
   mKIAA0108   102 IQY-EVIGNY-----YSSERMAD-NACVLFAVSVLMFIISSMLVYGAIS- 143  

                   RsrraawkiPffcyqLfDFcLsiLvaiSslmyvptileyksqlpmNYfPy
                     ++++w+iPffcy+LfDF+Ls+LvaiSsl+y+p+i+ey++qlp+  fPy
   mKIAA0108   144 --YQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQLPD--FPY 189  

                   qdDvlhvqficLllIvlvffivvLiFKvYLikCVWnCYkyInnrNsseva
                   +dD+l+++++cLl+Ivlvff+v++iFK+YLi+CVWnCYkyInnrN++e+a
   mKIAA0108   190 KDDLLALDSSCLLFIVLVFFVVFIIFKAYLINCVWNCYKYINNRNVPEIA 239  

                   vyskmedPtkvvLPsYEeAlSLPvktPekePpPPylSa<-*
                   vy+++e+P+++vLP+YE+A+    k+PekePpPPyl+a   
   mKIAA0108   240 VYPAFETPPQYVLPTYEMAV----KIPEKEPPPPYLPA    273  

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